Conservation of cofitness between Pf1N1B4_57 and Pf1N1B4_7 in Pseudomonas fluorescens FW300-N1B4

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N1B4 1.0 Pf1N1B4_57 tRNA dihydrouridine synthase A 1.0 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.27 3
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_00295 tRNA-dihydrouridine synthase A 0.92 AO353_20660 pseudouridine synthase low > 101
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_2257 tRNA dihydrouridine synthase A 0.97 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.27 87
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_02170 tRNA-dihydrouridine synthase A 0.94 AO356_21435 pseudouridine synthase low > 104
Pseudomonas sp. RS175 0.93 PFR28_01143 tRNA-dihydrouridine(20/20a) synthase 0.95 PFR28_02817 tRNA pseudouridine synthase A low > 88
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_3987 tRNA dihydrouridine synthase A 0.97 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas fluorescens SBW25 0.90 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.91 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.91 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas simiae WCS417 0.90 PS417_07740 tRNA-dihydrouridine synthase A 0.91 PS417_18565 pseudouridine synthase — —
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.92 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.92 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas putida KT2440 0.84 PP_2169 tRNA-dihydrouridine synthase A 0.78 PP_1994 tRNA pseudouridine (38-40)synthase 0.22 56
Pseudomonas sp. S08-1 0.84 OH686_22745 tRNA-dihydrouridine(20/20a) synthase 0.74 OH686_04450 tRNA pseudouridine(38-40) synthase low > 80
Pseudomonas stutzeri RCH2 0.82 Psest_2706 tRNA dihydrouridine synthase A 0.74 Psest_2585 pseudouridylate synthase I low > 67
Marinobacter adhaerens HP15 0.63 HP15_2240 tRNA-dihydrouridine synthase, TIM-barrel, YjbN 0.48 HP15_1829 tRNA pseudouridine synthase A low > 73
Shewanella loihica PV-4 0.59 Shew_0536 tRNA-dihydrouridine synthase A (RefSeq) 0.49 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Shewanella amazonensis SB2B 0.59 Sama_3055 tRNA-dihydrouridine synthase A (RefSeq) 0.50 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) low > 62
Shewanella sp. ANA-3 0.59 Shewana3_0718 tRNA-dihydrouridine synthase A (RefSeq) 0.50 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) low > 73
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_03994 tRNA-dihydrouridine(20/20a) synthase 0.51 OHPLBJKB_01387 tRNA pseudouridine synthase A low > 73
Escherichia coli ECRC62 0.59 BNILDI_06330 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.52 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA low > 75
Escherichia coli ECOR27 0.59 NOLOHH_05195 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.51 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA 0.53 50
Escherichia coli ECRC102 0.59 NIAGMN_10790 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.52 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli BW25113 0.59 b4049 dusA tRNA-dihydrouridine synthase A (RefSeq) 0.52 b2318 truA tRNA pseudouridine synthase A (NCBI) low > 76
Escherichia coli Nissle 1917 0.59 ECOLIN_RS23355 tRNA dihydrouridine(20/20a) synthase DusA 0.52 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA low > 55
Escherichia coli BL21 0.59 ECD_03921 tRNA-dihydrouridine synthase A 0.51 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Escherichia coli ECRC99 0.59 KEDOAH_15205 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.52 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC100 0.59 OKFHMN_12945 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.52 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase low > 80
Escherichia coli ECOR38 0.59 HEPCGN_11560 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.52 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase low > 87
Escherichia coli ECRC98 0.59 JDDGAC_16580 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.52 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_01985 tRNA dihydrouridine(20/20a) synthase DusA 0.52 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA low > 62
Serratia liquefaciens MT49 0.58 IAI46_22970 tRNA dihydrouridine(20/20a) synthase DusA 0.51 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Escherichia fergusonii Becca 0.58 EFB2_04556 tRNA-dihydrouridine(20/20a) synthase 0.52 EFB2_01540 tRNA pseudouridine synthase A low > 86
Rahnella sp. WP5 0.58 EX31_RS11865 tRNA dihydrouridine(20/20a) synthase DusA 0.51 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF1418 tRNA dihydrouridine synthase A (EC 1.-.-.-) 0.52 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.50 12
Pectobacterium carotovorum WPP14 0.58 HER17_RS03680 tRNA dihydrouridine(20/20a) synthase DusA 0.51 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75
Escherichia coli ECRC101 0.58 MCAODC_03455 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.52 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase low > 87
Enterobacter sp. TBS_079 0.58 MPMX20_00265 tRNA-dihydrouridine(20/20a) synthase 0.52 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4263 tRNA dihydrouridine synthase A 0.52 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase low > 76
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS22650 tRNA dihydrouridine(20/20a) synthase DusA 0.43 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA low > 153
Klebsiella michiganensis M5al 0.58 BWI76_RS01900 tRNA-dihydrouridine synthase A 0.52 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA low > 92
Dickeya dadantii 3937 0.57 DDA3937_RS17480 tRNA dihydrouridine(20/20a) synthase DusA 0.49 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA low > 74
Dickeya dianthicola ME23 0.57 DZA65_RS18620 tRNA dihydrouridine(20/20a) synthase DusA 0.50 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA low > 75
Kangiella aquimarina DSM 16071 0.57 B158DRAFT_2018 tRNA dihydrouridine synthase A 0.49 B158DRAFT_1483 pseudouridylate synthase I low > 40
Acinetobacter radioresistens SK82 0.57 MPMX26_00482 tRNA-dihydrouridine(20/20a) synthase 0.46 MPMX26_00352 tRNA pseudouridine synthase A low > 36
Dickeya dianthicola 67-19 0.57 HGI48_RS17540 tRNA dihydrouridine(20/20a) synthase DusA 0.50 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS08700 tRNA-dihydrouridine synthase A 0.44 BPHYT_RS33885 tRNA pseudouridine synthase A low > 109
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_00766 tRNA-U16,U17-dihydrouridine synthase 0.44 H281DRAFT_06069 tRNA pseudouridine38-40 synthase low > 103
Herbaspirillum seropedicae SmR1 0.57 HSERO_RS17905 tRNA-dihydrouridine synthase A 0.42 HSERO_RS16485 tRNA pseudouridine synthase A low > 78
Paraburkholderia graminis OAS925 0.57 ABIE53_001975 tRNA-dihydrouridine synthase A 0.46 ABIE53_004807 tRNA pseudouridine38-40 synthase low > 113
Pantoea sp. MT58 0.56 IAI47_17865 tRNA dihydrouridine(20/20a) synthase DusA 0.49 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA low > 76
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS12665 tRNA-dihydrouridine synthase A 0.36 RR42_RS14370 tRNA pseudouridine synthase A — —
Variovorax sp. OAS795 0.56 ABID97_RS13915 tRNA dihydrouridine(20/20a) synthase DusA 0.40 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA low > 91
Ralstonia solanacearum PSI07 0.55 RPSI07_RS17630 tRNA dihydrouridine(20/20a) synthase DusA 0.40 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA low > 81
Ralstonia solanacearum UW163 0.55 UW163_RS13175 tRNA dihydrouridine(20/20a) synthase DusA 0.40 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS15730 tRNA dihydrouridine(20/20a) synthase DusA 0.40 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum GMI1000 0.55 RS_RS06510 tRNA dihydrouridine(20/20a) synthase DusA 0.41 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA low > 80
Azospirillum sp. SherDot2 0.55 MPMX19_00670 tRNA-dihydrouridine(20/20a) synthase 0.30 MPMX19_02005 tRNA pseudouridine synthase A — —
Azospirillum brasilense Sp245 0.55 AZOBR_RS15935 tRNA-dihydrouridine synthase A 0.31 AZOBR_RS03570 tRNA pseudouridine synthase A — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.54 GFF4791 tRNA dihydrouridine synthase A 0.41 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 90
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS11300 tRNA dihydrouridine(20/20a) synthase DusA 0.40 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA low > 80
Dyella japonica UNC79MFTsu3.2 0.54 ABZR86_RS18350 tRNA dihydrouridine(20/20a) synthase DusA 0.38 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA low > 74
Variovorax sp. SCN45 0.54 GFF928 tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) 0.41 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) 0.65 59
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS05995 tRNA dihydrouridine(20/20a) synthase DusA 0.39 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA low > 59
Alteromonas macleodii MIT1002 0.53 MIT1002_03387 putative tRNA-dihydrouridine synthase 0.48 MIT1002_02529 tRNA pseudouridine synthase A low > 70
Rhodanobacter denitrificans MT42 0.53 LRK55_RS05750 tRNA dihydrouridine(20/20a) synthase DusA 0.39 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA low > 63
Acidovorax sp. GW101-3H11 0.53 Ac3H11_2288 tRNA dihydrouridine synthase A 0.42 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 79
Synechococcus elongatus PCC 7942 0.53 Synpcc7942_2066 tRNA-dihydrouridine synthase A 0.25 Synpcc7942_2207 truA tRNA pseudouridine synthase A — —
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_00625 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.37 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA — —
Erwinia tracheiphila SCR3 0.52 LU632_RS23765 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.50 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA — —
Lysobacter sp. OAE881 0.51 ABIE51_RS03925 tRNA dihydrouridine(20/20a) synthase DusA 0.38 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA low > 62
Rhizobium sp. OAE497 0.50 ABIE40_RS10895 tRNA dihydrouridine(20/20a) synthase DusA 0.27 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA low > 107
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_01364 NIFR3-like protein 0.28 CCNA_00280 tRNA pseudouridine synthase A low > 67
Caulobacter crescentus NA1000 0.50 CCNA_01364 NIFR3-like protein 0.28 CCNA_00280 tRNA pseudouridine synthase A 0.64 3
Castellaniella sp019104865 MT123 0.50 ABCV34_RS04335 tRNA dihydrouridine(20/20a) synthase DusA 0.40 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA 0.96 20
Dinoroseobacter shibae DFL-12 0.50 Dshi_2512 TIM-barrel protein, yjbN family (RefSeq) 0.24 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.50 Rru_A1621 Dihydrouridine synthase TIM-barrel protein yjbN (NCBI) 0.31 Rru_A3352 Pseudouridylate synthase (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.49 A4249_RS10515 tRNA dihydrouridine(20/20a) synthase DusA 0.26 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA low > 48
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.5010.1 tRNA dihydrouridine synthase A 0.38 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 74
Agrobacterium fabrum C58 0.48 Atu1515 hypothetical protein 0.28 Atu0368 tRNA pseudouridine synthase I 0.26 2
Rhodopseudomonas palustris CGA009 0.48 TX73_010150 tRNA dihydrouridine(20/20a) synthase DusA 0.24 TX73_003225 tRNA pseudouridine(38-40) synthase TruA low > 86
Bosea sp. OAE506 0.48 ABIE41_RS21285 tRNA dihydrouridine(20/20a) synthase DusA 0.29 ABIE41_RS00165 tRNA pseudouridine(38-40) synthase TruA low > 77
Phaeobacter inhibens DSM 17395 0.45 PGA1_c19230 tRNA-dihydrouridine synthase A 0.25 PGA1_c05650 tRNA pseudouridine synthase A low > 62
Sinorhizobium meliloti 1021 0.44 SMc04235 tRNA-dihydrouridine synthase A 0.29 SMc01099 tRNA pseudouridine synthase A 0.70 24

Not shown: 1 genomes with orthologs for Pf1N1B4_57 only; 18 genomes with orthologs for Pf1N1B4_7 only