Conservation of cofitness between PP_1326 and PP_5114 in Pseudomonas putida KT2440

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase 1.0 PP_5114 putative adenine methyltransferase 0.54 20
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_15290 methyltransferase 0.61 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 101
Pseudomonas sp. RS175 0.84 PFR28_03597 Ribosomal RNA small subunit methyltransferase I 0.62 PFR28_04262 Ribosomal RNA small subunit methyltransferase D low > 88
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_5346 rRNA small subunit methyltransferase I 0.63 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.84 Psyr_4112 Protein of unknown function UPF0011 0.67 Psyr_4754 16S rRNA m(2)G-966 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.84 Psyr_4112 Protein of unknown function UPF0011 0.67 Psyr_4754 16S rRNA m(2)G-966 methyltransferase low > 86
Pseudomonas fluorescens FW300-N2C3 0.83 AO356_17110 methyltransferase 0.62 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.53 17
Pseudomonas fluorescens FW300-N1B4 0.83 Pf1N1B4_953 rRNA small subunit methyltransferase I 0.61 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) — —
Pseudomonas fluorescens SBW25 0.83 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.63 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 109
Pseudomonas fluorescens SBW25-INTG 0.83 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.63 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.26 92
Pseudomonas simiae WCS417 0.83 PS417_04590 methyltransferase 0.62 PS417_26825 16S rRNA methyltransferase — —
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_1643 rRNA small subunit methyltransferase I 0.62 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) low > 87
Pseudomonas stutzeri RCH2 0.77 Psest_3270 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.66 Psest_0255 RNA methyltransferase, RsmD family — —
Pseudomonas sp. S08-1 0.76 OH686_08340 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.65 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.68 41
Shewanella amazonensis SB2B 0.56 Sama_3353 hypothetical protein (RefSeq) 0.39 Sama_3469 hypothetical protein (RefSeq) 0.46 37
Shewanella loihica PV-4 0.55 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) 0.42 Shew_3607 putative methyltransferase (RefSeq) 0.43 1
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase 0.43 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 62
Escherichia coli Nissle 1917 0.54 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia fergusonii Becca 0.54 EFB2_00677 Ribosomal RNA small subunit methyltransferase I 0.43 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.49 39
Escherichia coli BW25113 0.54 b3146 yraL predicted methyltransferase (NCBI) 0.43 b3465 yhhF predicted methyltransferase (NCBI) low > 76
Escherichia coli BL21 0.54 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent 0.43 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent low > 60
Escherichia coli ECRC98 0.54 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli ECRC99 0.54 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli ECRC101 0.54 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli ECOR38 0.54 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.64 85
Escherichia coli ECRC102 0.54 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli ECRC101 0.54 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Marinobacter adhaerens HP15 0.54 HP15_554 tetrapyrrole methylase family protein 0.44 HP15_3491 conserved hypothetical protein 0.63 2
Escherichia coli ECRC62 0.54 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase — —
Escherichia coli ECOR27 0.54 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.43 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I 0.44 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.78 6
Erwinia tracheiphila SCR3 0.54 LU632_RS02230 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.41 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase low > 74
Shewanella oneidensis MR-1 0.53 SO0301 hypothetical methyltransferase (NCBI ptt file) 0.43 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.60 1
Pectobacterium carotovorum WPP14 0.53 HER17_RS19860 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Acinetobacter radioresistens SK82 0.52 MPMX26_02282 Ribosomal RNA small subunit methyltransferase I 0.35 MPMX26_02312 Ribosomal RNA small subunit methyltransferase D low > 36
Dickeya dadantii 3937 0.52 DDA3937_RS01715 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.46 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase low > 74
Shewanella sp. ANA-3 0.52 Shewana3_3879 hypothetical protein (RefSeq) 0.43 Shewana3_3973 putative methyltransferase (RefSeq) 0.65 61
Dickeya dianthicola 67-19 0.52 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.46 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase low > 71
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.39 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 74
Dickeya dianthicola ME23 0.52 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.46 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF1521 rRNA small subunit methyltransferase I 0.39 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) low > 78
Enterobacter asburiae PDN3 0.52 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.39 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 76
Enterobacter sp. TBS_079 0.51 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I 0.38 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D low > 85
Rahnella sp. WP5 0.51 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase low > 89
Klebsiella michiganensis M5al 0.51 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase 0.40 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase low > 92
Rhodanobacter denitrificans MT42 0.51 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.39 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.59 39
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.39 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 59
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_11735 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 52
Lysobacter sp. OAE881 0.49 ABIE51_RS04695 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.35 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 62
Pantoea sp. MT58 0.49 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.42 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase low > 76
Serratia liquefaciens MT49 0.49 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.47 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase low > 86
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS23345 16S rRNA methyltransferase 0.29 HSERO_RS20695 methyltransferase 0.48 1
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_2109 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.37 B158DRAFT_0443 16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52) low > 40
Dechlorosoma suillum PS 0.46 Dsui_0251 putative S-adenosylmethionine-dependent methyltransferase, YraL family 0.35 Dsui_1027 RNA methyltransferase, RsmD family low > 51
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS00655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.34 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.89 35
Synechococcus elongatus PCC 7942 0.41 Synpcc7942_0174 hypothetical protein 0.19 Synpcc7942_1480 hypothetical protein low > 38
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS01940 16S rRNA methyltransferase 0.35 BPHYT_RS02815 methyltransferase low > 109
Bosea sp. OAE506 0.37 ABIE41_RS03315 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.23 ABIE41_RS23215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 77
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_02152 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.33 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 103
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS19740 16S rRNA methyltransferase 0.28 RR42_RS01990 methyltransferase 0.47 1
Castellaniella sp019104865 MT123 0.37 ABCV34_RS14320 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.33 ABCV34_RS10145 RsmD family RNA methyltransferase low > 48
Rhizobium sp. OAE497 0.37 ABIE40_RS01370 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.22 ABIE40_RS03765 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 107
Agrobacterium fabrum C58 0.35 Atu0302 tetrapyrrole methylase family protein 0.21 Atu0690 hypothetical protein low > 89
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS08495 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.27 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 76
Paraburkholderia graminis OAS925 0.35 ABIE53_000470 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.32 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase low > 113
Ralstonia solanacearum UW163 0.35 UW163_RS05115 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.27 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD — —
Rhodopseudomonas palustris CGA009 0.35 TX73_001680 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.22 TX73_005985 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.56 2
Ralstonia solanacearum PSI07 0.35 RPSI07_RS08730 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.27 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 81
Azospirillum sp. SherDot2 0.35 MPMX19_02471 Ribosomal RNA small subunit methyltransferase I 0.22 MPMX19_01626 Ribosomal RNA small subunit methyltransferase D — —
Ralstonia solanacearum GMI1000 0.35 RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.26 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 80
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS03815 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.26 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 80
Azospirillum brasilense Sp245 0.34 AZOBR_RS02155 16S rRNA methyltransferase 0.24 AZOBR_RS04500 methyltransferase — —
Acidovorax sp. GW101-3H11 0.34 Ac3H11_4466 rRNA small subunit methyltransferase I 0.29 Ac3H11_3873 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) — —
Magnetospirillum magneticum AMB-1 0.33 AMB_RS22780 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.22 AMB_RS20860 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD low > 64
Dinoroseobacter shibae DFL-12 0.31 Dshi_2831 Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq) 0.22 Dshi_0115 putative methyltransferase (RefSeq) low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.31 A4249_RS13300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.24 A4249_RS04215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF2715 rRNA small subunit methyltransferase I 0.27 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.78 8
Mycobacterium tuberculosis H37Rv 0.27 Rv1003 Conserved protein 0.20 Rv2966c Possible methyltransferase (methylase) — —
Phaeobacter inhibens DSM 17395 0.26 PGA1_c26730 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.28 PGA1_c29260 ribosomal RNA small subunit methyltransferase D low > 62
Rhodospirillum rubrum S1H 0.26 Rru_A3693 Protein of unknown function UPF0011 (NCBI) 0.22 Rru_A0653 hypothetical protein (NCBI) — —

Not shown: 8 genomes with orthologs for PP_1326 only; 6 genomes with orthologs for PP_5114 only