Conservation of cofitness between PP_4098 and PP_4993 in Pseudomonas putida KT2440

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4098 UvrABC system protein C 1.0 PP_4993 Glutathione synthetase 0.25 12
Pseudomonas simiae WCS417 0.87 PS417_10725 excinuclease ABC subunit C 0.89 PS417_26675 glutathione synthetase — —
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_00350 excinuclease ABC subunit C 0.88 AO356_13475 glutathione synthetase 0.29 38
Pseudomonas fluorescens SBW25 0.87 PFLU_RS10770 excinuclease ABC subunit UvrC 0.89 PFLU_RS28320 glutathione synthase low > 109
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS10770 excinuclease ABC subunit UvrC 0.89 PFLU_RS28320 glutathione synthase low > 109
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_2896 Excinuclease ABC subunit C 0.86 Psyr_0487 glutathione synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_2896 Excinuclease ABC subunit C 0.86 Psyr_0487 glutathione synthase low > 86
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_5618 Excinuclease ABC subunit C 0.86 Pf1N1B4_2352 Glutathione synthetase (EC 6.3.2.3) low > 87
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_2886 Excinuclease ABC subunit C 0.87 PfGW456L13_1021 Glutathione synthetase (EC 6.3.2.3) low > 87
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_21835 excinuclease ABC subunit C 0.86 AO353_08110 glutathione synthetase low > 101
Pseudomonas sp. RS175 0.84 PFR28_01411 UvrABC system protein C 0.88 PFR28_04232 Glutathione synthetase low > 88
Pseudomonas stutzeri RCH2 0.84 Psest_2259 excinuclease ABC, C subunit 0.77 Psest_0296 glutathione synthetase, prokaryotic low > 67
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_2021 Excinuclease ABC subunit C 0.88 Pf6N2E2_4612 Glutathione synthetase (EC 6.3.2.3) low > 103
Pseudomonas sp. S08-1 0.82 OH686_00340 excinuclease ABC subunit C 0.84 OH686_10915 glutathione synthase low > 80
Marinobacter adhaerens HP15 0.56 HP15_1568 excinuclease ABC subunit C 0.65 HP15_3512 glutathione synthetase 0.31 55
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS00380 excinuclease ABC subunit UvrC 0.58 LRK54_RS04200 glutathione synthase — —
Rhodanobacter denitrificans MT42 0.55 LRK55_RS00120 excinuclease ABC subunit UvrC 0.58 LRK55_RS03970 glutathione synthase — —
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_06930 uvrC excinuclease ABC subunit UvrC 0.58 OKGIIK_11075 gshB glutathione synthase low > 52
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS02245 excinuclease ABC subunit UvrC 0.58 ABZR86_RS10370 glutathione synthase — —
Escherichia coli BL21 0.52 ECD_01878 excinuclease UvrABC, endonuclease subunit 0.66 ECD_02777 glutathione synthetase low > 60
Escherichia coli Nissle 1917 0.52 ECOLIN_RS10895 excinuclease ABC subunit UvrC 0.66 ECOLIN_RS16395 glutathione synthase — —
Escherichia coli BW25113 0.52 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) 0.66 b2947 gshB glutathione synthetase (NCBI) low > 76
Escherichia fergusonii Becca 0.52 EFB2_02033 UvrABC system protein C 0.66 EFB2_00955 Glutathione synthetase low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_01816 UvrABC system protein C 0.66 OHPLBJKB_00771 Glutathione synthetase low > 73
Escherichia coli ECRC62 0.52 BNILDI_15235 uvrC excinuclease ABC subunit UvrC 0.66 BNILDI_09725 gshB glutathione synthase — —
Klebsiella michiganensis M5al 0.52 BWI76_RS18330 excinuclease ABC subunit C 0.66 BWI76_RS24075 glutathione synthase low > 92
Escherichia coli ECRC101 0.52 MCAODC_19565 uvrC excinuclease ABC subunit UvrC 0.66 MCAODC_09795 gshB glutathione synthase — —
Escherichia coli ECOR38 0.52 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC 0.65 HEPCGN_18580 gshB glutathione synthase low > 85
Escherichia coli ECRC101 0.52 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC 0.66 OKFHMN_19275 gshB glutathione synthase — —
Escherichia coli ECRC99 0.52 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC 0.66 KEDOAH_08865 gshB glutathione synthase — —
Escherichia coli ECRC98 0.52 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC 0.66 JDDGAC_22905 gshB glutathione synthase — —
Escherichia coli ECRC102 0.52 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC 0.66 NIAGMN_17040 gshB glutathione synthase — —
Escherichia coli ECOR27 0.52 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC 0.66 NOLOHH_11145 gshB glutathione synthase — —
Serratia liquefaciens MT49 0.52 IAI46_09210 excinuclease ABC subunit UvrC 0.67 IAI46_21390 glutathione synthase low > 86
Pantoea sp. MT58 0.51 IAI47_12465 excinuclease ABC subunit UvrC 0.62 IAI47_03615 glutathione synthase low > 76
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_06140 excinuclease ABC subunit C 0.66 CSW01_02490 glutathione synthetase low > 62
Erwinia tracheiphila SCR3 0.51 LU632_RS10195 uvrC excinuclease ABC subunit UvrC 0.65 LU632_RS05480 gshB glutathione synthase — —
Shewanella oneidensis MR-1 0.51 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) 0.63 SO0831 gshB glutathione synthetase (NCBI ptt file) low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF1700 Excinuclease ABC subunit C 0.65 GFF3049 Glutathione synthetase (EC 6.3.2.3) low > 78
Shewanella sp. ANA-3 0.51 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) 0.64 Shewana3_3445 glutathione synthetase (RefSeq) low > 73
Dickeya dianthicola 67-19 0.51 HGI48_RS13795 excinuclease ABC subunit UvrC 0.65 HGI48_RS18495 glutathione synthase low > 71
Dickeya dianthicola ME23 0.51 DZA65_RS14285 excinuclease ABC subunit UvrC 0.65 DZA65_RS19630 glutathione synthase low > 75
Dickeya dadantii 3937 0.51 DDA3937_RS13700 excinuclease ABC subunit UvrC 0.65 DDA3937_RS18560 glutathione synthase low > 74
Shewanella amazonensis SB2B 0.51 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) 0.64 Sama_0574 glutathione synthetase (RefSeq) low > 62
Shewanella loihica PV-4 0.51 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) 0.62 Shew_3225 glutathione synthetase (RefSeq) low > 60
Enterobacter asburiae PDN3 0.51 EX28DRAFT_0634 Excinuclease ABC subunit C 0.65 EX28DRAFT_2985 glutathione synthase (EC 6.3.2.3) low > 76
Pectobacterium carotovorum WPP14 0.51 HER17_RS07715 excinuclease ABC subunit UvrC 0.66 HER17_RS02635 glutathione synthase low > 75
Rahnella sp. WP5 0.51 EX31_RS24150 excinuclease ABC subunit UvrC 0.64 EX31_RS02665 glutathione synthase low > 89
Enterobacter sp. TBS_079 0.51 MPMX20_02838 UvrABC system protein C 0.64 MPMX20_03805 Glutathione synthetase low > 85
Dechlorosoma suillum PS 0.50 Dsui_2470 excinuclease ABC, C subunit 0.45 Dsui_0746 glutathione synthetase low > 51
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_1273 Excinuclease ABC subunit C 0.56 B158DRAFT_0189 glutathione synthase (EC 6.3.2.3) — —
Acinetobacter radioresistens SK82 0.49 MPMX26_00228 UvrABC system protein C 0.63 MPMX26_02936 Glutathione synthetase low > 36
Alteromonas macleodii MIT1002 0.49 MIT1002_02153 Excinuclease ABC subunit C 0.55 MIT1002_03055 Glutathione synthetase low > 70
Lysobacter sp. OAE881 0.47 ABIE51_RS12455 excinuclease ABC subunit UvrC 0.59 ABIE51_RS05210 glutathione synthase — —
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.2477.1 Excinuclease ABC subunit C 0.57 Xcc-8004.1501.1 Glutathione synthetase (EC 6.3.2.3) — —
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS09690 excinuclease ABC subunit C 0.46 HSERO_RS00435 glutathione synthetase low > 78
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS14000 excinuclease ABC subunit C 0.49 RR42_RS01780 glutathione synthetase low > 128
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS10245 excinuclease ABC subunit UvrC 0.48 ABZR87_RS06710 glutathione synthase low > 80
Ralstonia solanacearum GMI1000 0.44 RS_RS05305 excinuclease ABC subunit UvrC 0.48 RS_RS01700 glutathione synthetase low > 80
Ralstonia solanacearum PSI07 0.44 RPSI07_RS18935 excinuclease ABC subunit UvrC 0.48 RPSI07_RS22450 glutathione synthase low > 81
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS14525 excinuclease ABC subunit UvrC 0.48 RALBFv3_RS10860 glutathione synthase low > 76
Ralstonia solanacearum UW163 0.44 UW163_RS11990 excinuclease ABC subunit UvrC 0.48 UW163_RS02720 glutathione synthase — —
Castellaniella sp019104865 MT123 0.44 ABCV34_RS06980 excinuclease ABC subunit UvrC 0.46 ABCV34_RS04795 glutathione synthase low > 48
Variovorax sp. OAS795 0.42 ABID97_RS10635 excinuclease ABC subunit UvrC 0.45 ABID97_RS04630 glutathione synthase low > 91
Variovorax sp. SCN45 0.42 GFF2859 Excinuclease ABC subunit C 0.44 GFF6322 Glutathione synthetase (EC 6.3.2.3) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF3847 Excinuclease ABC subunit C 0.43 GFF2650 Glutathione synthetase (EC 6.3.2.3) — —
Acidovorax sp. GW101-3H11 0.40 Ac3H11_373 Excinuclease ABC subunit C 0.47 Ac3H11_711 Glutathione synthetase (EC 6.3.2.3) low > 79
Rhodopseudomonas palustris CGA009 0.39 TX73_006010 excinuclease ABC subunit UvrC 0.37 TX73_001670 glutathione synthase — —
Phaeobacter inhibens DSM 17395 0.39 PGA1_c02880 uvrABC system protein C 0.41 PGA1_c26710 glutathione synthetase GshB — —
Azospirillum brasilense Sp245 0.39 AZOBR_RS08965 excinuclease ABC subunit C 0.41 AZOBR_RS02170 glutathione synthetase low > 97
Dinoroseobacter shibae DFL-12 0.39 Dshi_0644 excinuclease ABC, C subunit (RefSeq) 0.37 Dshi_2829 glutathione synthetase (RefSeq) — —
Azospirillum sp. SherDot2 0.38 MPMX19_01070 UvrABC system protein C 0.42 MPMX19_02474 Glutathione synthetase — —
Rhodospirillum rubrum S1H 0.38 Rru_A2220 Excinuclease ABC, C subunit (NCBI) 0.40 Rru_A3690 Glutathione synthetase (NCBI) — —
Agrobacterium fabrum C58 0.37 Atu1129 excinuclease ABC chain C 0.38 Atu0310 glutathione synthetase — —
Sinorhizobium meliloti 1021 0.36 SMc00602 excinuclease ABC subunit C 0.42 SMc00419 glutathione synthetase low > 103
Sphingomonas koreensis DSMZ 15582 0.36 Ga0059261_3186 Excinuclease ABC subunit C 0.37 Ga0059261_2757 glutathione synthase (EC 6.3.2.3) — —
Magnetospirillum magneticum AMB-1 0.36 AMB_RS19240 UvrABC system protein C 0.41 AMB_RS22800 glutathione synthase low > 64
Rhizobium sp. OAE497 0.35 ABIE40_RS06500 excinuclease ABC subunit UvrC 0.39 ABIE40_RS01405 glutathione synthase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS01670 excinuclease ABC subunit UvrC 0.40 A4249_RS14140 glutathione synthase — —
Caulobacter crescentus NA1000 0.33 CCNA_02975 excinuclease ABC subunit C 0.41 CCNA_00140 glutathione synthetase — —
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_02975 excinuclease ABC subunit C 0.41 CCNA_00140 glutathione synthetase — —
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_1945 uvrC excinuclease ABC subunit C 0.38 Synpcc7942_2324 gshB glutathione synthetase 0.54 21

Not shown: 14 genomes with orthologs for PP_4098 only; 5 genomes with orthologs for PP_4993 only