Conservation of cofitness between PP_1783 and PP_4874 in Pseudomonas putida KT2440

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1783 dTDP-glucose pyrophosphorylase 1.0 PP_4874 50S ribosomal protein L9 0.38 20
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_0924 Glucose-1-phosphate thymidylyltransferase 0.81 Psyr_0584 LSU ribosomal protein L9P — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_0924 Glucose-1-phosphate thymidylyltransferase 0.81 Psyr_0584 LSU ribosomal protein L9P — —
Acidovorax sp. GW101-3H11 0.83 Ac3H11_1882 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.42 Ac3H11_1514 LSU ribosomal protein L9p — —
Paraburkholderia sabiae LMG 24235 0.78 QEN71_RS25750 glucose-1-phosphate thymidylyltransferase RfbA 0.49 QEN71_RS22490 50S ribosomal protein L9 — —
Variovorax sp. OAS795 0.78 ABID97_RS05670 glucose-1-phosphate thymidylyltransferase RfbA 0.42 ABID97_RS10840 50S ribosomal protein L9 0.47 46
Ralstonia solanacearum PSI07 0.78 RPSI07_RS20605 glucose-1-phosphate thymidylyltransferase 0.43 RPSI07_RS17575 50S ribosomal protein L9 — —
Ralstonia solanacearum IBSBF1503 0.77 RALBFv3_RS12655 glucose-1-phosphate thymidylyltransferase 0.46 RALBFv3_RS15790 50S ribosomal protein L9 — —
Ralstonia solanacearum UW163 0.77 UW163_RS00910 glucose-1-phosphate thymidylyltransferase 0.46 UW163_RS13235 50S ribosomal protein L9 — —
Burkholderia phytofirmans PsJN 0.77 BPHYT_RS04270 glucose-1-phosphate thymidylyltransferase 0.43 BPHYT_RS08870 50S ribosomal protein L9 — —
Ralstonia solanacearum GMI1000 0.77 RS_RS03440 glucose-1-phosphate thymidylyltransferase 0.47 RS_RS06570 50S ribosomal protein L9 — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.77 GFF1839 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.48 GFF3928 LSU ribosomal protein L9p low > 90
Variovorax sp. SCN45 0.77 GFF6880 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.41 GFF2813 LSU ribosomal protein L9p — —
Paraburkholderia bryophila 376MFSha3.1 0.77 H281DRAFT_04823 Glucose-1-phosphate thymidylyltransferase 0.43 H281DRAFT_00792 LSU ribosomal protein L9P — —
Castellaniella sp019104865 MT123 0.76 ABCV34_RS13015 glucose-1-phosphate thymidylyltransferase RfbA 0.43 ABCV34_RS02260 50S ribosomal protein L9 — —
Escherichia coli BL21 0.76 ECD_01945 glucose-1-phosphate thymidylyltransferase 0.60 ECD_04070 50S ribosomal subunit protein L9 — —
Escherichia coli ECOR38 0.76 HEPCGN_03115 rfbA glucose-1-phosphate thymidylyltransferase RfbA 0.60 HEPCGN_10330 rplI 50S ribosomal protein L9 — —
Ralstonia sp. UNC404CL21Col 0.76 ABZR87_RS08655 glucose-1-phosphate thymidylyltransferase RfbA 0.45 ABZR87_RS11360 50S ribosomal protein L9 — —
Escherichia fergusonii Becca 0.76 EFB2_01815 Glucose-1-phosphate thymidylyltransferase 1 0.60 EFB2_04332 50S ribosomal protein L9 low > 86
Escherichia coli BW25113 0.75 b2039 rfbA glucose-1-phosphate thymidylyltransferase (NCBI) 0.60 b4203 rplI 50S ribosomal protein L9 (NCBI) low > 76
Paraburkholderia graminis OAS925 0.75 ABIE53_001138 glucose-1-phosphate thymidylyltransferase 0.43 ABIE53_002008 large subunit ribosomal protein L9 — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF3889 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.60 GFF857 LSU ribosomal protein L9p — —
Enterobacter sp. TBS_079 0.74 MPMX20_03012 Glucose-1-phosphate thymidylyltransferase 1 0.58 MPMX20_00480 50S ribosomal protein L9 low > 85
Dechlorosoma suillum PS 0.74 Dsui_1950 glucose-1-phosphate thymidylyltransferase, short form 0.54 Dsui_1992 ribosomal protein L9 — —
Synechococcus elongatus PCC 7942 0.72 Synpcc7942_2101 rfbA glucose-1-phosphate thymidylyltransferase 0.27 Synpcc7942_2559 rplI 50S ribosomal protein L9 low > 38
Alteromonas macleodii MIT1002 0.71 MIT1002_03560 Glucose-1-phosphate thymidylyltransferase 1 0.64 MIT1002_03816 50S ribosomal protein L9 — —
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_341 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.80 Pf1N1B4_1398 LSU ribosomal protein L9p — —
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS18730 glucose-1-phosphate thymidylyltransferase RfbA 0.57 ABZR86_RS08860 50S ribosomal protein L9 low > 74
Erwinia tracheiphila SCR3 0.70 LU632_RS08860 rfbA glucose-1-phosphate thymidylyltransferase RfbA 0.58 LU632_RS21710 rplI 50S ribosomal protein L9 low > 74
Pseudomonas fluorescens GW456-L13 0.70 PfGW456L13_2199 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.85 PfGW456L13_139 LSU ribosomal protein L9p — —
Pseudomonas simiae WCS417 0.68 PS417_01325 glucose-1-phosphate thymidylyltransferase 0.73 PS417_02580 50S ribosomal protein L9 — —
Lysobacter sp. OAE881 0.68 ABIE51_RS15615 glucose-1-phosphate thymidylyltransferase RfbA 0.52 ABIE51_RS09230 50S ribosomal protein L9 low > 62
Pseudomonas sp. S08-1 0.68 OH686_14375 glucose-1-phosphate thymidylyltransferase 0.78 OH686_15935 ribosomal protein L9 low > 80
Shewanella loihica PV-4 0.68 Shew_1402 glucose-1-phosphate thymidylyltransferase (RefSeq) 0.63 Shew_3281 rplI 50S ribosomal protein L9 (RefSeq) — —
Shewanella sp. ANA-3 0.68 Shewana3_1380 glucose-1-phosphate thymidylyltransferase (RefSeq) 0.56 Shewana3_0704 rplI 50S ribosomal protein L9 (RefSeq) — —
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.4485.1 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.58 Xcc-8004.3313.1 LSU ribosomal protein L9p low > 74
Pseudomonas sp. RS175 0.67 PFR28_04893 Glucose-1-phosphate thymidylyltransferase 2 0.81 PFR28_05135 50S ribosomal protein L9 — —
Rhodanobacter denitrificans MT42 0.67 LRK55_RS05425 glucose-1-phosphate thymidylyltransferase RfbA 0.57 LRK55_RS02290 50S ribosomal protein L9 low > 63
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS05670 glucose-1-phosphate thymidylyltransferase RfbA 0.57 LRK54_RS02535 50S ribosomal protein L9 0.49 54
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_01661 Glucose-1-phosphate thymidylyltransferase 2 0.60 OHPLBJKB_03839 50S ribosomal protein L9 — —
Parabacteroides merdae CL09T00C40 0.67 HMPREF1078_RS00175 glucose-1-phosphate thymidylyltransferase RfbA 0.30 HMPREF1078_RS10755 50S ribosomal protein L9 — —
Acinetobacter radioresistens SK82 0.67 MPMX26_00452 Glucose-1-phosphate thymidylyltransferase 1 0.67 MPMX26_01155 50S ribosomal protein L9 low > 36
Pseudomonas stutzeri RCH2 0.67 Psest_4263 glucose-1-phosphate thymidylyltransferase, short form 0.85 Psest_0697 ribosomal protein L9 — —
Serratia liquefaciens MT49 0.67 IAI46_00615 glucose-1-phosphate thymidylyltransferase RfbA 0.63 IAI46_01715 50S ribosomal protein L9 — —
Pseudomonas fluorescens FW300-N2E2 0.67 Pf6N2E2_3879 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.80 Pf6N2E2_3602 LSU ribosomal protein L9p — —
Pseudomonas fluorescens SBW25-INTG 0.67 PFLU_RS01420 glucose-1-phosphate thymidylyltransferase RfbA 0.73 PFLU_RS02650 50S ribosomal protein L9 — —
Pseudomonas fluorescens SBW25 0.67 PFLU_RS01420 glucose-1-phosphate thymidylyltransferase RfbA 0.73 PFLU_RS02650 50S ribosomal protein L9 — —
Enterobacter asburiae PDN3 0.66 EX28DRAFT_0527 glucose-1-phosphate thymidylyltransferase, short form 0.55 EX28DRAFT_3388 ribosomal protein L9 — —
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_10045 glucose-1-phosphate thymidylyltransferase 0.81 AO356_08585 50S ribosomal protein L9 — —
Dickeya dianthicola ME23 0.66 DZA65_RS07115 glucose-1-phosphate thymidylyltransferase RfbA 0.62 DZA65_RS18360 50S ribosomal protein L9 — —
Rhodanobacter sp. FW510-T8 0.66 OKGIIK_01170 rfbA glucose-1-phosphate thymidylyltransferase RfbA 0.56 OKGIIK_09590 rplI 50S ribosomal protein L9 low > 52
Pectobacterium carotovorum WPP14 0.66 HER17_RS14595 glucose-1-phosphate thymidylyltransferase RfbA 0.59 HER17_RS03905 50S ribosomal protein L9 — —
Dickeya dadantii 3937 0.66 DDA3937_RS06740 glucose-1-phosphate thymidylyltransferase RfbA 0.62 DDA3937_RS17215 50S ribosomal protein L9 — —
Pseudomonas fluorescens FW300-N2E3 0.66 AO353_11880 glucose-1-phosphate thymidylyltransferase 0.79 AO353_13225 50S ribosomal protein L9 — —
Marinobacter adhaerens HP15 0.66 HP15_p187g50 glucose-1-phosphate thymidylyltransferase 1 0.70 HP15_628 50S ribosomal protein L9 — —
Dickeya dianthicola 67-19 0.66 HGI48_RS06760 glucose-1-phosphate thymidylyltransferase RfbA 0.62 HGI48_RS17270 50S ribosomal protein L9 — —
Rahnella sp. WP5 0.65 EX31_RS11520 glucose-1-phosphate thymidylyltransferase RfbA 0.62 EX31_RS08745 50S ribosomal protein L9 — —
Pantoea sp. MT58 0.65 IAI47_18495 glucose-1-phosphate thymidylyltransferase RfbA 0.61 IAI47_02675 50S ribosomal protein L9 — —
Shewanella amazonensis SB2B 0.65 Sama_2240 glucose-1-phosphate thymidylyltransferase (RefSeq) 0.57 Sama_3061 rplI 50S ribosomal protein L9 (RefSeq) — —
Klebsiella michiganensis M5al 0.65 BWI76_RS19060 glucose-1-phosphate thymidylyltransferase 0.50 BWI76_RS02675 50S ribosomal protein L9 — —
Phocaeicola dorei CL03T12C01 0.65 ABI39_RS13385 glucose-1-phosphate thymidylyltransferase RfbA 0.30 ABI39_RS00060 50S ribosomal protein L9 — —
Phocaeicola vulgatus CL09T03C04 0.65 HMPREF1058_RS06630 glucose-1-phosphate thymidylyltransferase RfbA 0.30 HMPREF1058_RS07635 50S ribosomal protein L9 — —
Escherichia coli ECOR27 0.64 NOLOHH_06690 rfbA glucose-1-phosphate thymidylyltransferase RfbA 0.60 NOLOHH_04360 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC62 0.64 BNILDI_04835 rfbA glucose-1-phosphate thymidylyltransferase RfbA 0.60 BNILDI_07125 rplI 50S ribosomal protein L9 — —
Desulfovibrio vulgaris Hildenborough JW710 0.64 DVU0925 rfbA glucose-1-phosphate thymidylyltransferase (TIGR) 0.38 DVU0958 rplI ribosomal protein L9 (TIGR) — —
Escherichia coli ECRC102 0.64 NIAGMN_12310 rfbA glucose-1-phosphate thymidylyltransferase RfbA 0.60 NIAGMN_09950 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC101 0.64 OKFHMN_14555 rfbA glucose-1-phosphate thymidylyltransferase RfbA 0.60 OKFHMN_12100 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC99 0.64 KEDOAH_13595 rfbA glucose-1-phosphate thymidylyltransferase RfbA 0.60 KEDOAH_16055 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC98 0.64 JDDGAC_18180 rfbA glucose-1-phosphate thymidylyltransferase RfbA 0.60 JDDGAC_15740 rplI 50S ribosomal protein L9 — —
Escherichia coli ECRC101 0.64 MCAODC_05060 rfbA glucose-1-phosphate thymidylyltransferase RfbA 0.60 MCAODC_02615 rplI 50S ribosomal protein L9 — —
Escherichia coli Nissle 1917 0.64 ECOLIN_RS21750 glucose-1-phosphate thymidylyltransferase RfbA 0.60 ECOLIN_RS24390 50S ribosomal protein L9 — —
Bacteroides thetaiotaomicron VPI-5482 0.64 BT0463 glucose-1-phosphate thymidylyltransferase (NCBI ptt file) 0.30 BT2161 50S ribosomal protein L9 (NCBI ptt file) low > 81
Pedobacter sp. GW460-11-11-14-LB5 0.64 CA265_RS19325 glucose-1-phosphate thymidylyltransferase 0.29 CA265_RS02395 50S ribosomal protein L9 — —
Bacteroides ovatus ATCC 8483 0.64 BACOVA_03744 glucose-1-phosphate thymidylyltransferase 0.32 BACOVA_03185 ribosomal protein L9 — —
Shewanella oneidensis MR-1 0.64 SO3186 rfbA glucose-1-phosphate-thymidylyltransferase (NCBI ptt file) 0.58 SO3927 rplI ribosomal protein L9 (NCBI ptt file) — —
Desulfovibrio vulgaris Miyazaki F 0.63 DvMF_1381 glucose-1-phosphate thymidylyltransferase (RefSeq) 0.39 DvMF_1352 rplI 50S ribosomal protein L9 (RefSeq) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.62 Echvi_2361 glucose-1-phosphate thymidylyltransferase, short form 0.32 Echvi_2386 ribosomal protein L9 — —
Bifidobacterium breve UCC2003 0.62 BBR_RS19780 glucose-1-phosphate thymidylyltransferase 0.25 BBR_RS11595 50S ribosomal protein L9 — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.62 ABZR88_RS17485 glucose-1-phosphate thymidylyltransferase RfbA 0.32 ABZR88_RS05035 50S ribosomal protein L9 — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.62 CA264_17920 glucose-1-phosphate thymidylyltransferase 0.29 CA264_01265 50S ribosomal protein L9 — —
Bacteroides stercoris CC31F 0.61 HMPREF1181_RS08025 glucose-1-phosphate thymidylyltransferase RfbA 0.29 HMPREF1181_RS08725 50S ribosomal protein L9 — —
Mycobacterium tuberculosis H37Rv 0.60 Rv0334 Alpha-D-glucose-1-phosphate thymidylyltransferase RmlA (dTDP-glucose synthase) (dTDP-glucose pyrophosphorylase) 0.34 Rv0056 50S ribosomal protein L9 RplI — —

Not shown: 13 genomes with orthologs for PP_1783 only; 5 genomes with orthologs for PP_4874 only