| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_0949 | | putative ATP-binding protein UPF0042 | 1.0 | PP_4008 | | ATP-dependent serine protease | 0.42 | 5 |
| Pseudomonas fluorescens GW456-L13 | 0.92 | PfGW456L13_5017 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.94 | PfGW456L13_2646 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.92 | AO356_07050 | | glmZ(sRNA)-inactivating NTPase | 0.94 | AO356_22150 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.91 | Pf6N2E2_3270 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.94 | Pf6N2E2_292 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.90 | Pf1N1B4_1083 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.94 | Pf1N1B4_4055 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas sp. RS175 | 0.90 | PFR28_00170 | | RNase adapter protein RapZ | 0.95 | PFR28_02613 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.45 | 33 |
| Pseudomonas fluorescens FW300-N2E3 | 0.90 | AO353_05195 | | glmZ(sRNA)-inactivating NTPase | 0.94 | AO353_27675 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 101 |
| Pseudomonas simiae WCS417 | 0.89 | PS417_04330 | | glmZ(sRNA)-inactivating NTPase | 0.94 | PS417_16510 | | Clp protease ClpX | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.89 | PFLU_RS04385 | | RNase adapter RapZ | 0.93 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.89 | PFLU_RS04385 | | RNase adapter RapZ | 0.93 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.87 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | 0.93 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.87 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | 0.93 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Pseudomonas sp. S08-1 | 0.85 | OH686_08560 | | RNase adapter protein RapZ | 0.91 | OH686_00235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.80 | 16 |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_3316 | | Predicted P-loop-containing kinase | 0.92 | Psest_2027 | | ATP-dependent Clp protease ATP-binding subunit clpA | low | > 67 |
| Marinobacter adhaerens HP15 | 0.55 | HP15_2445 | | protein yhbJ | 0.79 | HP15_2080 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.48 | MIT1002_00824 | | glmZ(sRNA)-inactivating NTPase | 0.67 | MIT1002_01834 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 70 |
| Serratia liquefaciens MT49 | 0.48 | IAI46_22485 | | RNase adapter RapZ | 0.66 | IAI46_08515 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Rahnella sp. WP5 | 0.47 | EX31_RS12385 | | RNase adapter RapZ | 0.66 | EX31_RS18560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 89 |
| Enterobacter asburiae PDN3 | 0.47 | EX28DRAFT_3259 | | Predicted P-loop-containing kinase | 0.67 | EX28DRAFT_2050 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | 0.69 | 5 |
| Escherichia coli ECOR38 | 0.47 | HEPCGN_16800 | rapZ | RNase adapter RapZ | 0.67 | HEPCGN_22900 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.75 | 80 |
| Escherichia coli ECRC101 | 0.47 | MCAODC_08445 | rapZ | RNase adapter RapZ | 0.67 | MCAODC_25000 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli BW25113 | 0.47 | b3205 | yhbJ | hypothetical protein (NCBI) | 0.67 | b0882 | clpA | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 0.47 | JDDGAC_21550 | rapZ | RNase adapter RapZ | 0.67 | JDDGAC_09420 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECRC62 | 0.47 | BNILDI_01810 | rapZ | RNase adapter RapZ | 0.67 | BNILDI_20435 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECRC99 | 0.47 | KEDOAH_10225 | rapZ | RNase adapter RapZ | 0.67 | KEDOAH_22125 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia fergusonii Becca | 0.47 | EFB2_00618 | | RNase adapter protein RapZ | 0.67 | EFB2_03179 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.47 | OHPLBJKB_00495 | | RNase adapter protein RapZ | 0.67 | OHPLBJKB_02786 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 73 |
| Pectobacterium carotovorum WPP14 | 0.47 | HER17_RS20075 | | RNase adapter RapZ | 0.67 | HER17_RS12400 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Escherichia coli ECRC101 | 0.47 | OKFHMN_17925 | rapZ | RNase adapter RapZ | 0.67 | OKFHMN_05785 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli Nissle 1917 | 0.47 | ECOLIN_RS18440 | | RNase adapter RapZ | 0.67 | ECOLIN_RS04695 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 52 |
| Escherichia coli ECRC102 | 0.47 | NIAGMN_15685 | rapZ | RNase adapter RapZ | 0.67 | NIAGMN_03825 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECOR27 | 0.47 | NOLOHH_09725 | rapZ | RNase adapter RapZ | 0.67 | NOLOHH_22180 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 57 |
| Escherichia coli BL21 | 0.47 | ECD_03070 | | adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase | 0.67 | ECD_00887 | | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity | low | > 60 |
| Dickeya dianthicola 67-19 | 0.47 | HGI48_RS01430 | | RNase adapter RapZ | 0.66 | HGI48_RS09575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 71 |
| Dickeya dianthicola ME23 | 0.47 | DZA65_RS01495 | | RNase adapter RapZ | 0.66 | DZA65_RS09885 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.38 | 48 |
| Klebsiella michiganensis M5al | 0.47 | BWI76_RS25280 | | RNase adaptor protein RapZ | 0.67 | BWI76_RS09615 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.29 | 69 |
| Enterobacter sp. TBS_079 | 0.47 | MPMX20_04111 | | RNase adapter protein RapZ | 0.67 | MPMX20_01544 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 85 |
| Dickeya dadantii 3937 | 0.47 | DDA3937_RS01515 | | RNase adapter RapZ | 0.67 | DDA3937_RS09560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Pantoea sp. MT58 | 0.47 | IAI47_17200 | | RNase adapter RapZ | 0.67 | IAI47_12945 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.47 | LU632_RS21295 | rapZ | RNase adapter RapZ | 0.64 | LU632_RS09705 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.47 | GFF2949 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.67 | GFF4901 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 78 |
| Shewanella loihica PV-4 | 0.47 | Shew_3314 | | hypothetical protein (RefSeq) | 0.68 | Shew_1566 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | — | — |
| Shewanella amazonensis SB2B | 0.46 | Sama_3091 | | hypothetical protein (RefSeq) | 0.70 | Sama_2056 | | ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.46 | CSW01_12830 | | RNase adaptor protein RapZ | 0.67 | CSW01_05805 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 62 |
| Burkholderia phytofirmans PsJN | 0.46 | BPHYT_RS02885 | | glmZ(sRNA)-inactivating NTPase | 0.64 | BPHYT_RS15710 | | ATP-dependent Clp protease ATP-binding protein | low | > 109 |
| Shewanella oneidensis MR-1 | 0.46 | SO3964 | | conserved hypothetical protein (NCBI ptt file) | 0.69 | SO2626 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.46 | Shewana3_0669 | | hypothetical protein (RefSeq) | 0.70 | Shewana3_1753 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 73 |
| Paraburkholderia sabiae LMG 24235 | 0.46 | QEN71_RS01735 | | RNase adapter RapZ | 0.64 | QEN71_RS03005 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.45 | H281DRAFT_01931 | | UPF0042 nucleotide-binding protein | 0.64 | H281DRAFT_04082 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 103 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_02250 | rapZ | RNase adapter RapZ | 0.68 | OKGIIK_06890 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS19800 | | RNase adapter RapZ | 0.69 | ABZR86_RS02200 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Ralstonia solanacearum UW163 | 0.45 | UW163_RS02435 | | RNase adapter RapZ | 0.64 | UW163_RS08860 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.45 | RALBFv3_RS11145 | | RNase adapter RapZ | 0.64 | RALBFv3_RS04810 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS22155 | | RNase adapter RapZ | 0.64 | RPSI07_RS12575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.44 | RS_RS01995 | | RNase adaptor protein RapZ | 0.65 | RS_RS12370 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS07035 | | RNase adapter RapZ | 0.65 | ABZR87_RS00435 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS12560 | | RNase adapter RapZ | 0.67 | LRK55_RS00160 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS12860 | | RNase adapter RapZ | 0.67 | LRK54_RS00420 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 59 |
| Dechlorosoma suillum PS | 0.44 | Dsui_0990 | | putative P-loop-containing kinase | 0.66 | Dsui_0009 | | ATP-dependent Clp protease ATP-binding subunit clpA | 0.58 | 31 |
| Lysobacter sp. OAE881 | 0.44 | ABIE51_RS15975 | | RNase adapter RapZ | 0.67 | ABIE51_RS11490 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 62 |
| Kangiella aquimarina DSM 16071 | 0.44 | B158DRAFT_2077 | | Predicted P-loop-containing kinase | 0.68 | B158DRAFT_1505 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | low | > 40 |
| Cupriavidus basilensis FW507-4G11 | 0.42 | RR42_RS02060 | | nucleotide-binding protein | 0.64 | RR42_RS17105 | | Clp protease ClpX | low | > 128 |
| Acinetobacter radioresistens SK82 | 0.41 | MPMX26_00547 | | RNase adapter protein RapZ | 0.64 | MPMX26_01284 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 36 |
| Herbaspirillum seropedicae SmR1 | 0.40 | HSERO_RS19535 | | nucleotide-binding protein | 0.64 | HSERO_RS07030 | | ATP-dependent Clp protease ATP-binding protein | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.40 | Xcc-8004.1658.1 | | hypothetical protein | 0.66 | Xcc-8004.2754.1 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.71 | 29 |
| Acidovorax sp. GW101-3H11 | 0.40 | Ac3H11_3459 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.64 | Ac3H11_2456 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 79 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.39 | GFF828 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | 0.64 | GFF4521 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 90 |
| Variovorax sp. SCN45 | 0.39 | GFF2356 | | RNase adapter protein RapZ | 0.64 | GFF341 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 127 |
| Variovorax sp. OAS795 | 0.39 | ABID97_RS23710 | | RNase adapter RapZ | 0.63 | ABID97_RS16910 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 91 |
| Castellaniella sp019104865 MT123 | 0.39 | ABCV34_RS14330 | | RNase adapter RapZ | 0.62 | ABCV34_RS05305 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 48 |
| Rhodospirillum rubrum S1H | 0.37 | Rru_A3448 | | Uncharacterized P-loop ATPase protein UPF0042 (NCBI) | 0.64 | Rru_A2109 | | ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) | low | > 58 |
| Phaeobacter inhibens DSM 17395 | 0.35 | PGA1_c01180 | | Predicted P-loop-containing kinase | 0.59 | PGA1_c25150 | | ATP-dependent Clp protease ATP-binding subunit | low | > 62 |
| Azospirillum sp. SherDot2 | 0.34 | MPMX19_02622 | | Nucleotide-binding protein | 0.62 | MPMX19_00503 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 112 |
| Magnetospirillum magneticum AMB-1 | 0.33 | AMB_RS22235 | | RNase adaptor protein RapZ | 0.62 | AMB_RS05705 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 64 |
| Azospirillum brasilense Sp245 | 0.33 | AZOBR_RS30485 | | nucleotide-binding protein | 0.62 | AZOBR_RS05175 | | ATP-dependent Clp protease ATP-binding protein | low | > 97 |
| Dinoroseobacter shibae DFL-12 | 0.32 | Dshi_0209 | | hypothetical protein (RefSeq) | 0.60 | Dshi_2939 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 64 |
| Desulfovibrio vulgaris Miyazaki F | 0.32 | DvMF_0424 | | hypothetical protein (RefSeq) | 0.50 | DvMF_0458 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 51 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.29 | DVU1631 | | conserved hypothetical protein (TIGR) | 0.52 | DVU1602 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (TIGR) | low | > 55 |
| Sphingomonas koreensis DSMZ 15582 | 0.28 | Ga0059261_0917 | | Predicted P-loop-containing kinase | 0.61 | Ga0059261_1001 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | low | > 68 |
Not shown: 4 genomes with orthologs for PP_0949 only; 10 genomes with orthologs for PP_4008 only