Conservation of cofitness between PP_5217 and PP_2148 in Pseudomonas putida KT2440

83 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5217 Polyphosphate kinase 1.0 PP_2148 transcription-repair coupling factor 0.35 15
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_4453 Polyphosphate kinase (EC 2.7.4.1) 0.89 Pf6N2E2_2278 Transcription-repair coupling factor low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_0293 Polyphosphate kinase 0.87 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_0293 Polyphosphate kinase 0.87 Psyr_1896 transcription-repair coupling factor 0.50 27
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_2208 Polyphosphate kinase (EC 2.7.4.1) 0.87 Pf1N1B4_3916 Transcription-repair coupling factor low > 87
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_874 Polyphosphate kinase (EC 2.7.4.1) 0.87 PfGW456L13_4027 Transcription-repair coupling factor low > 87
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_12895 polyphosphate kinase 0.89 AO356_02270 transcription-repair coupling factor low > 104
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_08885 polyphosphate kinase 0.89 AO353_00435 transcription-repair coupling factor low > 101
Pseudomonas sp. RS175 0.90 PFR28_04345 Polyphosphate kinase 0.89 PFR28_01123 Transcription-repair-coupling factor low > 88
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS29095 polyphosphate kinase 1 0.87 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens SBW25 0.90 PFLU_RS29095 polyphosphate kinase 1 0.87 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas simiae WCS417 0.89 PS417_27435 polyphosphate kinase 0.87 PS417_07635 transcription-repair coupling factor low > 88
Pseudomonas stutzeri RCH2 0.85 Psest_3732 polyphosphate kinase 1 0.85 Psest_1653 transcription-repair coupling factor (mfd) low > 67
Pseudomonas sp. S08-1 0.84 OH686_13995 polyphosphate kinase 1 0.84 OH686_21990 transcription-repair coupling factor low > 80
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS07490 polyphosphate kinase 1 0.56 ABZR86_RS21210 transcription-repair coupling factor low > 74
Rhodanobacter denitrificans FW104-10B01 0.68 LRK54_RS16000 polyphosphate kinase 1 0.55 LRK54_RS02040 transcription-repair coupling factor low > 59
Rhodanobacter denitrificans MT42 0.68 LRK55_RS15755 polyphosphate kinase 1 0.55 LRK55_RS01815 transcription-repair coupling factor low > 63
Rhodanobacter sp. FW510-T8 0.68 OKGIIK_08995 ppk1 RNA degradosome polyphosphate kinase 0.54 OKGIIK_09105 mfd transcription-repair coupling factor low > 52
Marinobacter adhaerens HP15 0.59 HP15_3334 polyphosphate kinase 0.62 HP15_2257 transcription-repair-coupling factor low > 73
Acinetobacter radioresistens SK82 0.57 MPMX26_02335 Polyphosphate kinase 0.52 MPMX26_01319 Transcription-repair-coupling factor low > 36
Dechlorosoma suillum PS 0.51 Dsui_2814 polyphosphate kinase 1 0.48 Dsui_2385 transcription-repair coupling factor Mfd low > 51
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_2312 polyphosphate kinase 1 0.54 B158DRAFT_1800 transcription-repair coupling factor low > 40
Lysobacter sp. OAE881 0.49 ABIE51_RS14230 polyphosphate kinase 1 0.54 ABIE51_RS14320 transcription-repair coupling factor low > 62
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS31480 polyphosphate kinase 0.48 RR42_RS07845 transcription-repair coupling factor low > 128
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.4064.1 Polyphosphate kinase (EC 2.7.4.1) 0.53 Xcc-8004.1775.1 Transcription-repair coupling factor low > 74
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS06305 polyphosphate kinase 0.49 HSERO_RS15180 transcription-repair coupling factor low > 78
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS14065 polyphosphate kinase 1 0.50 ABZR87_RS13240 transcription-repair coupling factor low > 80
Ralstonia solanacearum PSI07 0.47 RPSI07_RS15330 polyphosphate kinase 1 0.48 RPSI07_RS16040 transcription-repair coupling factor low > 81
Paraburkholderia graminis OAS925 0.47 ABIE53_002988 polyphosphate kinase 0.50 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) low > 113
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS02115 polyphosphate kinase 1 0.49 RALBFv3_RS01445 transcription-repair coupling factor low > 76
Ralstonia solanacearum UW163 0.46 UW163_RS15425 polyphosphate kinase 1 0.49 UW163_RS14755 transcription-repair coupling factor — —
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS14110 polyphosphate kinase 0.49 BPHYT_RS09290 helicase low > 109
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS04860 polyphosphate kinase 1 0.49 QEN71_RS22060 transcription-repair coupling factor low > 153
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04418 polyphosphate kinase 0.49 H281DRAFT_00880 transcription-repair coupling factor low > 103
Ralstonia solanacearum GMI1000 0.46 RS_RS07705 polyphosphate kinase 1 0.49 RS_RS08275 transcription-repair coupling factor low > 80
Castellaniella sp019104865 MT123 0.45 ABCV34_RS15580 polyphosphate kinase 1 0.47 ABCV34_RS08660 transcription-repair coupling factor low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF4226 Polyphosphate kinase (EC 2.7.4.1) 0.49 GFF4934 Transcription-repair coupling factor low > 90
Acidovorax sp. GW101-3H11 0.41 Ac3H11_452 Polyphosphate kinase (EC 2.7.4.1) 0.48 Ac3H11_328 Transcription-repair coupling factor low > 79
Variovorax sp. OAS795 0.40 ABID97_RS14575 polyphosphate kinase 1 0.49 ABID97_RS17285 transcription-repair coupling factor low > 91
Variovorax sp. SCN45 0.40 GFF1089 Polyphosphate kinase (EC 2.7.4.1) 0.49 GFF412 Transcription-repair coupling factor low > 127
Bifidobacterium breve UCC2003 0.37 BBR_RS19645 RNA degradosome polyphosphate kinase 0.27 BBR_RS14115 transcription-repair coupling factor low > 34
Synechococcus elongatus PCC 7942 0.36 Synpcc7942_1566 ppk polyphosphate kinase 0.28 Synpcc7942_1326 mfd transcription-repair coupling factor low > 38
Rhodospirillum rubrum S1H 0.35 Rru_A2161 Polyphosphate kinase (NCBI) 0.33 Rru_A1726 Transcription-repair coupling factor (NCBI) low > 58
Bosea sp. OAE506 0.35 ABIE41_RS16125 RNA degradosome polyphosphate kinase 0.33 ABIE41_RS15825 transcription-repair coupling factor 0.73 41
Magnetospirillum magneticum AMB-1 0.34 AMB_RS14295 RNA degradosome polyphosphate kinase 0.33 AMB_RS12390 transcription-repair coupling factor low > 64
Caulobacter crescentus NA1000 0.34 CCNA_01782 polyphosphate kinase 1 0.34 CCNA_01920 transcription-repair coupling factor Mfd low > 66
Caulobacter crescentus NA1000 Δfur 0.34 CCNA_01782 polyphosphate kinase 1 0.34 CCNA_01920 transcription-repair coupling factor Mfd low > 67
Sinorhizobium meliloti 1021 0.34 SMc00618 polyphosphate kinase 0.32 SMc04450 transcription-repair coupling factor low > 103
Dinoroseobacter shibae DFL-12 0.33 Dshi_0740 Polyphosphate kinase (RefSeq) 0.33 Dshi_1561 transcription-repair coupling factor (RefSeq) low > 64
Rhodopseudomonas palustris CGA009 0.33 TX73_015770 RNA degradosome polyphosphate kinase 0.33 TX73_013805 transcription-repair coupling factor low > 86
Rhizobium sp. OAE497 0.33 ABIE40_RS06575 RNA degradosome polyphosphate kinase 0.32 ABIE40_RS09310 transcription-repair coupling factor low > 107
Sphingomonas koreensis DSMZ 15582 0.33 Ga0059261_0225 polyphosphate kinase 1 0.33 Ga0059261_0960 transcription-repair coupling factor (mfd) low > 68
Azospirillum sp. SherDot2 0.33 MPMX19_01149 Polyphosphate kinase 0.33 MPMX19_00876 Transcription-repair-coupling factor 0.49 65
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS08195 RNA degradosome polyphosphate kinase 0.34 A4249_RS04775 transcription-repair coupling factor — —
Agrobacterium fabrum C58 0.32 Atu1144 polyphosphate kinase 0.33 Atu1778 transcription-repair coupling factor — —
Escherichia coli ECRC101 0.27 MCAODC_12330 ppk1 polyphosphate kinase 1 0.55 MCAODC_22830 mfd transcription-repair coupling factor — —
Escherichia coli ECRC98 0.27 JDDGAC_25745 ppk1 polyphosphate kinase 1 0.55 JDDGAC_07130 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 0.27 OKFHMN_21800 ppk1 polyphosphate kinase 1 0.55 OKFHMN_03470 mfd transcription-repair coupling factor — —
Escherichia coli ECRC62 0.27 BNILDI_12260 ppk1 polyphosphate kinase 1 0.55 BNILDI_19160 mfd transcription-repair coupling factor — —
Escherichia coli BL21 0.27 ECD_02393 polyphosphate kinase, component of RNA degradosome 0.55 ECD_01110 transcription-repair coupling factor low > 60
Escherichia coli ECOR38 0.27 HEPCGN_20965 ppk1 polyphosphate kinase 1 0.55 HEPCGN_24015 mfd transcription-repair coupling factor 0.81 24
Escherichia coli ECOR27 0.27 NOLOHH_13450 ppk1 polyphosphate kinase 1 0.55 NOLOHH_20995 mfd transcription-repair coupling factor — —
Escherichia coli ECRC102 0.27 NIAGMN_19570 ppk1 polyphosphate kinase 1 0.55 NIAGMN_24360 mfd transcription-repair coupling factor — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.27 OHPLBJKB_01225 Polyphosphate kinase 0.55 OHPLBJKB_02552 Transcription-repair-coupling factor 0.68 23
Escherichia coli BW25113 0.27 b2501 ppk polyphosphate kinase (NCBI) 0.55 b1114 mfd transcription-repair coupling factor (NCBI) low > 76
Escherichia coli ECRC99 0.27 KEDOAH_06420 ppk1 polyphosphate kinase 1 0.55 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia fergusonii Becca 0.27 EFB2_01397 Polyphosphate kinase 0.55 EFB2_02861 Transcription-repair-coupling factor low > 86
Pectobacterium carotovorum WPP14 0.27 HER17_RS06425 polyphosphate kinase 1 0.55 HER17_RS08775 transcription-repair coupling factor low > 75
Dickeya dadantii 3937 0.27 DDA3937_RS15150 polyphosphate kinase 1 0.55 DDA3937_RS13000 transcription-repair coupling factor low > 74
Klebsiella michiganensis M5al 0.27 BWI76_RS20995 RNA degradosome polyphosphate kinase 0.55 BWI76_RS11205 transcription-repair coupling factor low > 92
Dickeya dianthicola 67-19 0.27 HGI48_RS15225 polyphosphate kinase 1 0.55 HGI48_RS13065 transcription-repair coupling factor low > 71
Dickeya dianthicola ME23 0.27 DZA65_RS16045 polyphosphate kinase 1 0.55 DZA65_RS13530 transcription-repair coupling factor low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF2167 Polyphosphate kinase (EC 2.7.4.1) 0.55 GFF3397 Transcription-repair coupling factor low > 78
Enterobacter sp. TBS_079 0.26 MPMX20_03356 Polyphosphate kinase 0.54 MPMX20_01795 Transcription-repair-coupling factor low > 85
Serratia liquefaciens MT49 0.26 IAI46_18915 polyphosphate kinase 1 0.56 IAI46_10320 transcription-repair coupling factor low > 86
Rahnella sp. WP5 0.26 EX31_RS22680 polyphosphate kinase 1 0.55 EX31_RS24520 transcription-repair coupling factor low > 89
Enterobacter asburiae PDN3 0.26 EX28DRAFT_0166 polyphosphate kinase 1 0.54 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Pantoea sp. MT58 0.26 IAI47_05155 polyphosphate kinase 1 0.55 IAI47_11975 transcription-repair coupling factor low > 76
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_03780 polyphosphate kinase 1 0.56 CSW01_09445 transcription-repair coupling factor low > 62
Alteromonas macleodii MIT1002 0.26 MIT1002_00872 Polyphosphate kinase 0.57 MIT1002_01646 Transcription-repair-coupling factor low > 70
Erwinia tracheiphila SCR3 0.25 LU632_RS08260 ppk1 polyphosphate kinase 1 0.54 LU632_RS14730 mfd transcription-repair coupling factor low > 74
Shewanella amazonensis SB2B 0.25 Sama_2011 polyphosphate kinase (RefSeq) 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) low > 62
Shewanella sp. ANA-3 0.25 Shewana3_2417 polyphosphate kinase (RefSeq) 0.55 Shewana3_2289 transcription-repair coupling factor (RefSeq) low > 73
Shewanella loihica PV-4 0.25 Shew_3079 polyphosphate kinase (RefSeq) 0.55 Shew_1630 transcription-repair coupling factor (RefSeq) low > 60

Not shown: 13 genomes with orthologs for PP_5217 only; 4 genomes with orthologs for PP_2148 only