| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_0959 | | phospholipid ABC transporter | 1.0 | PP_2148 | | transcription-repair coupling factor | 0.33 | 16 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.91 | Psyr_4140 | | Protein of unknown function DUF140 | 0.87 | Psyr_1896 | | transcription-repair coupling factor | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.91 | Psyr_4140 | | Protein of unknown function DUF140 | 0.87 | Psyr_1896 | | transcription-repair coupling factor | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.90 | Pf6N2E2_3259 | | Uncharacterized ABC transporter, permease component YrbE | 0.89 | Pf6N2E2_2278 | | Transcription-repair coupling factor | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.90 | AO356_07000 | | ABC transporter permease | 0.89 | AO356_02270 | | transcription-repair coupling factor | 0.25 | 64 |
| Pseudomonas sp. RS175 | 0.89 | PFR28_00180 | | Intermembrane phospholipid transport system permease protein MlaE | 0.89 | PFR28_01123 | | Transcription-repair-coupling factor | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.88 | Psest_3306 | | conserved hypothetical integral membrane protein | 0.85 | Psest_1653 | | transcription-repair coupling factor (mfd) | low | > 67 |
| Pseudomonas sp. S08-1 | 0.85 | OH686_08505 | | Phospholipid ABC transporter permease protein MlaE | 0.84 | OH686_21990 | | transcription-repair coupling factor | low | > 80 |
| Pseudomonas fluorescens GW456-L13 | 0.85 | PfGW456L13_5007 | | Uncharacterized ABC transporter, permease component YrbE | 0.87 | PfGW456L13_4027 | | Transcription-repair coupling factor | — | — |
| Pseudomonas simiae WCS417 | 0.85 | PS417_04380 | | ABC transporter permease | 0.87 | PS417_07635 | | transcription-repair coupling factor | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.85 | PFLU_RS04435 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.87 | PFLU_RS07710 | | transcription-repair coupling factor | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.85 | PFLU_RS04435 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.87 | PFLU_RS07710 | | transcription-repair coupling factor | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.85 | AO353_05145 | | ABC transporter permease | 0.89 | AO353_00435 | | transcription-repair coupling factor | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.84 | Pf1N1B4_1073 | | Uncharacterized ABC transporter, permease component YrbE | 0.87 | Pf1N1B4_3916 | | Transcription-repair coupling factor | — | — |
| Marinobacter adhaerens HP15 | 0.72 | HP15_2435 | | ABC-type transport system involved in resistance to organic solvents, permease component | 0.62 | HP15_2257 | | transcription-repair-coupling factor | low | > 73 |
| Pantoea sp. MT58 | 0.64 | IAI47_17140 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | IAI47_11975 | | transcription-repair coupling factor | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.64 | CSW01_12770 | | ABC transporter permease | 0.56 | CSW01_09445 | | transcription-repair coupling factor | low | > 62 |
| Dickeya dadantii 3937 | 0.64 | DDA3937_RS01570 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | DDA3937_RS13000 | | transcription-repair coupling factor | low | > 74 |
| Serratia liquefaciens MT49 | 0.63 | IAI46_22425 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.56 | IAI46_10320 | | transcription-repair coupling factor | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.63 | HER17_RS20020 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | HER17_RS08775 | | transcription-repair coupling factor | low | > 75 |
| Dickeya dianthicola 67-19 | 0.63 | HGI48_RS01485 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | HGI48_RS13065 | | transcription-repair coupling factor | low | > 71 |
| Dickeya dianthicola ME23 | 0.63 | DZA65_RS01550 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | DZA65_RS13530 | | transcription-repair coupling factor | 0.60 | 26 |
| Rahnella sp. WP5 | 0.63 | EX31_RS12440 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | EX31_RS24520 | | transcription-repair coupling factor | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.62 | LU632_RS21240 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.54 | LU632_RS14730 | mfd | transcription-repair coupling factor | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.62 | GFF2938 | | Uncharacterized ABC transporter, permease component YrbE | 0.55 | GFF3397 | | Transcription-repair coupling factor | low | > 78 |
| Alteromonas macleodii MIT1002 | 0.61 | MIT1002_00835 | | putative phospholipid ABC transporter permease protein MlaE | 0.57 | MIT1002_01646 | | Transcription-repair-coupling factor | low | > 70 |
| Escherichia coli ECRC102 | 0.61 | NIAGMN_15740 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | NIAGMN_24360 | mfd | transcription-repair coupling factor | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.61 | OHPLBJKB_00506 | | putative phospholipid ABC transporter permease protein MlaE | 0.55 | OHPLBJKB_02552 | | Transcription-repair-coupling factor | low | > 73 |
| Escherichia coli ECOR38 | 0.61 | HEPCGN_16855 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | HEPCGN_24015 | mfd | transcription-repair coupling factor | 0.91 | 6 |
| Escherichia coli ECOR27 | 0.61 | NOLOHH_09780 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | NOLOHH_20995 | mfd | transcription-repair coupling factor | low | > 57 |
| Escherichia coli BW25113 | 0.61 | b3194 | yrbE | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | 0.55 | b1114 | mfd | transcription-repair coupling factor (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.61 | ECD_03059 | | ABC transporter maintaining OM lipid asymmetry, inner membrane permease protein | 0.55 | ECD_01110 | | transcription-repair coupling factor | low | > 60 |
| Escherichia fergusonii Becca | 0.61 | EFB2_00629 | | Intermembrane phospholipid transport system permease protein MlaE | 0.55 | EFB2_02861 | | Transcription-repair-coupling factor | low | > 86 |
| Escherichia coli ECRC101 | 0.61 | MCAODC_08500 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | MCAODC_22830 | mfd | transcription-repair coupling factor | — | — |
| Escherichia coli ECRC101 | 0.61 | OKFHMN_17980 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | OKFHMN_03470 | mfd | transcription-repair coupling factor | — | — |
| Escherichia coli ECRC99 | 0.61 | KEDOAH_10170 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | KEDOAH_24285 | mfd | transcription-repair coupling factor | — | — |
| Escherichia coli ECRC62 | 0.61 | BNILDI_01755 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | BNILDI_19160 | mfd | transcription-repair coupling factor | — | — |
| Escherichia coli ECRC98 | 0.61 | JDDGAC_21605 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | JDDGAC_07130 | mfd | transcription-repair coupling factor | — | — |
| Klebsiella michiganensis M5al | 0.61 | BWI76_RS25225 | | ABC transporter permease | 0.55 | BWI76_RS11205 | | transcription-repair coupling factor | low | > 92 |
| Shewanella amazonensis SB2B | 0.61 | Sama_3080 | | hypothetical protein (RefSeq) | 0.55 | Sama_1330 | | transcription-repair coupling factor (RefSeq) | low | > 62 |
| Enterobacter sp. TBS_079 | 0.60 | MPMX20_04100 | | Intermembrane phospholipid transport system permease protein MlaE | 0.54 | MPMX20_01795 | | Transcription-repair-coupling factor | low | > 85 |
| Enterobacter asburiae PDN3 | 0.60 | EX28DRAFT_3248 | | ABC transport permease subunit | 0.54 | EX28DRAFT_1816 | | transcription-repair coupling factor (mfd) | low | > 76 |
| Shewanella loihica PV-4 | 0.60 | Shew_3303 | | hypothetical protein (RefSeq) | 0.55 | Shew_1630 | | transcription-repair coupling factor (RefSeq) | low | > 60 |
| Shewanella oneidensis MR-1 | 0.60 | SO3953 | | conserved hypothetical protein TIGR00056 (NCBI ptt file) | 0.55 | SO2255 | mfd | transcription-repair coupling factor (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_0679 | | hypothetical protein (RefSeq) | 0.55 | Shewana3_2289 | | transcription-repair coupling factor (RefSeq) | low | > 73 |
| Acinetobacter radioresistens SK82 | 0.59 | MPMX26_02740 | | Intermembrane phospholipid transport system permease protein MlaE | 0.52 | MPMX26_01319 | | Transcription-repair-coupling factor | low | > 36 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.53 | H281DRAFT_05642 | | phospholipid/cholesterol/gamma-HCH transport system permease protein | 0.49 | H281DRAFT_00880 | | transcription-repair coupling factor | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.53 | ABIE53_003711 | | phospholipid/cholesterol/gamma-HCH transport system permease protein | 0.50 | ABIE53_002095 | | transcription-repair coupling factor (superfamily II helicase) | 0.48 | 71 |
| Cupriavidus basilensis FW507-4G11 | 0.53 | RR42_RS18965 | | ABC transporter permease | 0.48 | RR42_RS07845 | | transcription-repair coupling factor | low | > 128 |
| Paraburkholderia sabiae LMG 24235 | 0.52 | QEN71_RS27915 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.49 | QEN71_RS22060 | | transcription-repair coupling factor | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.51 | ABZR87_RS02550 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.50 | ABZR87_RS13240 | | transcription-repair coupling factor | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.51 | RALBFv3_RS06895 | | ABC transporter permease | 0.49 | RALBFv3_RS01445 | | transcription-repair coupling factor | — | — |
| Ralstonia solanacearum UW163 | 0.51 | UW163_RS06720 | | ABC transporter permease | 0.49 | UW163_RS14755 | | transcription-repair coupling factor | — | — |
| Ralstonia solanacearum GMI1000 | 0.51 | RS_RS14840 | | ABC transporter permease | 0.49 | RS_RS08275 | | transcription-repair coupling factor | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS10340 | | ABC transporter permease | 0.48 | RPSI07_RS16040 | | transcription-repair coupling factor | low | > 81 |
| Burkholderia phytofirmans PsJN | 0.50 | BPHYT_RS17760 | | ABC transporter permease | 0.49 | BPHYT_RS09290 | | helicase | low | > 109 |
| Dechlorosoma suillum PS | 0.50 | Dsui_1399 | | conserved hypothetical integral membrane protein | 0.48 | Dsui_2385 | | transcription-repair coupling factor Mfd | low | > 51 |
| Variovorax sp. SCN45 | 0.49 | GFF5335 | | Phospholipid ABC transporter permease protein MlaE | 0.49 | GFF412 | | Transcription-repair coupling factor | low | > 127 |
| Variovorax sp. OAS795 | 0.49 | ABID97_RS23210 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.49 | ABID97_RS17285 | | transcription-repair coupling factor | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.48 | Ac3H11_4713 | | Uncharacterized ABC transporter, permease component YrbE | 0.48 | Ac3H11_328 | | Transcription-repair coupling factor | low | > 79 |
| Castellaniella sp019104865 MT123 | 0.48 | ABCV34_RS11185 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.47 | ABCV34_RS08660 | | transcription-repair coupling factor | — | — |
| Herbaspirillum seropedicae SmR1 | 0.45 | HSERO_RS20395 | | ABC transporter permease | 0.49 | HSERO_RS15180 | | transcription-repair coupling factor | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.45 | LRK54_RS11765 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | LRK54_RS02040 | | transcription-repair coupling factor | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.45 | LRK55_RS11490 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.55 | LRK55_RS01815 | | transcription-repair coupling factor | low | > 63 |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS11880 | | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.56 | ABZR86_RS21210 | | transcription-repair coupling factor | low | > 74 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.45 | GFF1324 | | Uncharacterized ABC transporter, permease component YrbE | 0.49 | GFF4934 | | Transcription-repair coupling factor | low | > 90 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_12130 | mlaE | lipid asymmetry maintenance ABC transporter permease subunit MlaE | 0.54 | OKGIIK_09105 | mfd | transcription-repair coupling factor | low | > 52 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.5365.1 | | Uncharacterized ABC transporter, permease component YrbE | 0.53 | Xcc-8004.1775.1 | | Transcription-repair coupling factor | low | > 74 |
| Lysobacter sp. OAE881 | 0.35 | ABIE51_RS01010 | | MlaE family lipid ABC transporter permease subunit | 0.54 | ABIE51_RS14320 | | transcription-repair coupling factor | low | > 62 |
| Desulfovibrio vulgaris Miyazaki F | 0.35 | DvMF_0852 | | protein of unknown function DUF140 (RefSeq) | 0.26 | DvMF_0285 | | transcription-repair coupling factor (RefSeq) | low | > 51 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.34 | DVU1246 | | membrane protein, putative (TIGR) | 0.27 | DVU1903 | mfd | transcription-repair coupling factor (TIGR) | low | > 55 |
| Magnetospirillum magneticum AMB-1 | 0.31 | AMB_RS10570 | | ABC transporter permease | 0.33 | AMB_RS12390 | | transcription-repair coupling factor | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.30 | CCNA_03809 | | organic solvent resistance transport system permease | 0.34 | CCNA_01920 | | transcription-repair coupling factor Mfd | low | > 67 |
| Caulobacter crescentus NA1000 | 0.30 | CCNA_03809 | | organic solvent resistance transport system permease | 0.34 | CCNA_01920 | | transcription-repair coupling factor Mfd | low | > 66 |
| Azospirillum sp. SherDot2 | 0.30 | MPMX19_06141 | | Intermembrane phospholipid transport system permease protein MlaE | 0.33 | MPMX19_00876 | | Transcription-repair-coupling factor | low | > 112 |
| Rhodospirillum rubrum S1H | 0.30 | Rru_A0408 | | Protein of unknown function DUF140 (NCBI) | 0.33 | Rru_A1726 | | Transcription-repair coupling factor (NCBI) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.26 | PGA1_c10870 | | conserved hypothetical integral membrane protein | 0.33 | PGA1_c14920 | | transcription-repair-coupling factor Mfd | low | > 62 |
| Synechococcus elongatus PCC 7942 | 0.25 | Synpcc7942_0378 | ycf63 | Protein of unknown function DUF140 | 0.28 | Synpcc7942_1326 | mfd | transcription-repair coupling factor | low | > 38 |
| Dinoroseobacter shibae DFL-12 | 0.24 | Dshi_2379 | | protein of unknown function DUF140 (RefSeq) | 0.33 | Dshi_1561 | | transcription-repair coupling factor (RefSeq) | low | > 64 |
Not shown: 10 genomes with orthologs for PP_0959 only; 9 genomes with orthologs for PP_2148 only