| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_0850 | | Dual-specificity RNA methyltransferase RlmN | 1.0 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | 0.29 | 18 |
| Pseudomonas fluorescens FW300-N2C3 | 0.88 | AO356_06605 | | 23S rRNA (adenine(2503)-C2)-methyltransferase | 0.89 | AO356_20125 | | 23S rRNA pseudouridylate synthase | 0.28 | 29 |
| Pseudomonas fluorescens FW300-N2E2 | 0.88 | Pf6N2E2_3181 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.89 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | — | — |
| Pseudomonas sp. RS175 | 0.88 | PFR28_00294 | | Dual-specificity RNA methyltransferase RlmN | 0.90 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | 0.23 | 50 |
| Pseudomonas fluorescens FW300-N2E3 | 0.87 | AO353_15875 | | 23S rRNA (adenine(2503)-C2)-methyltransferase | 0.87 | AO353_01405 | | 23S rRNA pseudouridylate synthase | 0.48 | 4 |
| Pseudomonas fluorescens GW456-L13 | 0.87 | PfGW456L13_4865 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.86 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.87 | PFLU_RS24815 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.88 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.87 | PFLU_RS24815 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.88 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 109 |
| Pseudomonas simiae WCS417 | 0.87 | PS417_23160 | | 50S rRNA methyltransferase | 0.88 | PS417_21480 | | 23S rRNA pseudouridylate synthase | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.87 | Pf1N1B4_857 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.88 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.86 | Psyr_1245 | | 23S rRNA m(2)A-2503 methyltransferase | 0.90 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.86 | Psyr_1245 | | 23S rRNA m(2)A-2503 methyltransferase | 0.90 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Pseudomonas sp. S08-1 | 0.85 | OH686_17515 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase | 0.86 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_1259 | | 23S rRNA m2A2503 methyltransferase | 0.87 | Psest_1680 | | pseudouridine synthase, RluA family | — | — |
| Marinobacter adhaerens HP15 | 0.66 | HP15_1490 | | conserved hypothetical protein | 0.51 | HP15_2221 | | pseudouridine synthase, RluA family | low | > 73 |
| Acinetobacter radioresistens SK82 | 0.60 | MPMX26_00426 | | Dual-specificity RNA methyltransferase RlmN | 0.42 | MPMX26_00317 | | Ribosomal large subunit pseudouridine synthase C | low | > 36 |
| Kangiella aquimarina DSM 16071 | 0.57 | B158DRAFT_1149 | | 23S rRNA m2A2503 methyltransferase | 0.55 | B158DRAFT_1770 | | ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) | low | > 40 |
| Lysobacter sp. OAE881 | 0.56 | ABIE51_RS09415 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.45 | ABIE51_RS11800 | | RluA family pseudouridine synthase | low | > 62 |
| Escherichia coli BW25113 | 0.56 | b2517 | yfgB | predicted enzyme (NCBI) | 0.56 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | low | > 76 |
| Escherichia coli ECRC99 | 0.56 | KEDOAH_06510 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.55 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli ECOR38 | 0.56 | HEPCGN_20830 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.56 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 85 |
| Escherichia coli ECRC101 | 0.56 | MCAODC_12240 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.55 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli ECRC98 | 0.56 | JDDGAC_25385 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.55 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli ECRC62 | 0.56 | BNILDI_12160 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.56 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli BL21 | 0.56 | ECD_02409 | | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent | 0.56 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | low | > 60 |
| Escherichia coli ECRC101 | 0.56 | OKFHMN_21710 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.55 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia fergusonii Becca | 0.56 | EFB2_01373 | | Dual-specificity RNA methyltransferase RlmN | 0.56 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Escherichia coli Nissle 1917 | 0.56 | ECOLIN_RS14300 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.55 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 52 |
| Escherichia coli ECOR27 | 0.56 | NOLOHH_13360 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.56 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 57 |
| Escherichia coli ECRC102 | 0.56 | NIAGMN_19480 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.55 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_01192 | | Dual-specificity RNA methyltransferase RlmN | 0.56 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | 0.72 | 2 |
| Enterobacter asburiae PDN3 | 0.55 | EX28DRAFT_0126 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase | 0.55 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | low | > 76 |
| Enterobacter sp. TBS_079 | 0.55 | MPMX20_03395 | | Dual-specificity RNA methyltransferase RlmN | 0.56 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | low | > 85 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS15480 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.54 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 74 |
| Klebsiella michiganensis M5al | 0.55 | BWI76_RS21095 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.55 | BWI76_RS11050 | | 23S rRNA pseudouridine(955/2504/2580) synthase | low | > 92 |
| Pectobacterium carotovorum WPP14 | 0.55 | HER17_RS06085 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.56 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Rahnella sp. WP5 | 0.54 | EX31_RS20525 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.56 | EX31_RS24400 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 89 |
| Dickeya dianthicola ME23 | 0.54 | DZA65_RS16665 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.53 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Serratia liquefaciens MT49 | 0.54 | IAI46_19290 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.54 | IAI46_09755 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 86 |
| Shewanella sp. ANA-3 | 0.54 | Shewana3_1226 | | hypothetical protein (RefSeq) | 0.53 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | low | > 73 |
| Erwinia tracheiphila SCR3 | 0.54 | LU632_RS17815 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.56 | LU632_RS14855 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 74 |
| Dickeya dianthicola 67-19 | 0.54 | HGI48_RS15590 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.53 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 71 |
| Cupriavidus basilensis FW507-4G11 | 0.54 | RR42_RS13155 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.44 | RR42_RS14155 | | pseudouridine synthase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.54 | ABZR87_RS10900 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.44 | ABZR87_RS10090 | | RluA family pseudouridine synthase | low | > 80 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.54 | GFF2414 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.55 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.63 | 68 |
| Dechlorosoma suillum PS | 0.54 | Dsui_3145 | | 23S rRNA m2A2503 methyltransferase | 0.44 | Dsui_2437 | | pseudouridine synthase, RluA family | — | — |
| Ralstonia solanacearum PSI07 | 0.54 | RPSI07_RS18115 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.44 | RPSI07_RS19085 | | RluA family pseudouridine synthase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.54 | RS_RS06070 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.44 | RS_RS05155 | | RluA family pseudouridine synthase | low | > 80 |
| Ralstonia solanacearum UW163 | 0.54 | UW163_RS12725 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.43 | UW163_RS11840 | | RluA family pseudouridine synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.54 | RALBFv3_RS15260 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.43 | RALBFv3_RS14375 | | RluA family pseudouridine synthase | — | — |
| Rhodanobacter denitrificans MT42 | 0.53 | LRK55_RS18065 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.46 | LRK55_RS17750 | | RluA family pseudouridine synthase | 0.57 | 61 |
| Rhodanobacter denitrificans FW104-10B01 | 0.53 | LRK54_RS00070 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.45 | LRK54_RS17895 | | RluA family pseudouridine synthase | low | > 59 |
| Shewanella amazonensis SB2B | 0.53 | Sama_2368 | | hypothetical protein (RefSeq) | 0.55 | Sama_1988 | | pseudouridylate synthase (RefSeq) | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.53 | OKGIIK_07140 | rlmN | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.45 | OKGIIK_07405 | rluA | 23S rRNA pseudouridine(955/2504/2580) synthase | low | > 52 |
| Shewanella loihica PV-4 | 0.53 | Shew_1287 | | hypothetical protein (RefSeq) | 0.55 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | low | > 60 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.53 | Xcc-8004.2737.1 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.44 | Xcc-8004.2616.1 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 74 |
| Pantoea sp. MT58 | 0.53 | IAI47_05040 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.58 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 76 |
| Dyella japonica UNC79MFTsu3.2 | 0.53 | ABZR86_RS05455 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.43 | ABZR86_RS02725 | | RluA family pseudouridine synthase | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.53 | CSW01_03930 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | 0.51 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 62 |
| Paraburkholderia sabiae LMG 24235 | 0.53 | QEN71_RS05965 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.44 | QEN71_RS04500 | | RluA family pseudouridine synthase | 0.78 | 12 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.52 | H281DRAFT_00514 | | 23S rRNA m(2)A-2503 methyltransferase | 0.44 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | — | — |
| Burkholderia phytofirmans PsJN | 0.52 | BPHYT_RS12590 | | dual-specificity RNA methyltransferase RlmN | 0.43 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | 0.38 | 68 |
| Paraburkholderia graminis OAS925 | 0.52 | ABIE53_002744 | | 23S rRNA (adenine2503-C2)-methyltransferase | 0.45 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | low | > 113 |
| Herbaspirillum seropedicae SmR1 | 0.51 | HSERO_RS14810 | | 50S rRNA methyltransferase | 0.46 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_1791 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.42 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 79 |
| Alteromonas macleodii MIT1002 | 0.50 | MIT1002_02791 | | Dual-specificity RNA methyltransferase RlmN | 0.56 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | low | > 70 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.50 | GFF4866 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.41 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.56 | 56 |
| Variovorax sp. SCN45 | 0.49 | GFF992 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) | 0.43 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | low | > 127 |
| Variovorax sp. OAS795 | 0.49 | ABID97_RS14210 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.43 | ABID97_RS08250 | | RluA family pseudouridine synthase | low | > 91 |
| Castellaniella sp019104865 MT123 | 0.49 | ABCV34_RS02610 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.40 | ABCV34_RS08415 | | RluA family pseudouridine synthase | low | > 48 |
| Azospirillum brasilense Sp245 | 0.46 | AZOBR_RS00800 | | 50S rRNA methyltransferase | 0.22 | AZOBR_RS06905 | | pseudouridine synthase | 0.44 | 3 |
| Azospirillum sp. SherDot2 | 0.46 | MPMX19_02413 | | Dual-specificity RNA methyltransferase RlmN | 0.25 | MPMX19_01718 | | Ribosomal large subunit pseudouridine synthase C | low | > 112 |
| Phaeobacter inhibens DSM 17395 | 0.44 | PGA1_c36240 | | ribosomal RNA large subunit methyltransferase N | 0.25 | PGA1_c01950 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Agrobacterium fabrum C58 | 0.43 | Atu2673 | | hypothetical protein | 0.30 | Atu1471 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Dinoroseobacter shibae DFL-12 | 0.43 | Dshi_3311 | | radical SAM enzyme, Cfr family (RefSeq) | 0.23 | Dshi_0315 | | pseudouridine synthase, RluA family (RefSeq) | low | > 64 |
| Caulobacter crescentus NA1000 Δfur | 0.42 | CCNA_00133 | | radical SAM family enzyme | 0.22 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | low | > 67 |
| Caulobacter crescentus NA1000 | 0.42 | CCNA_00133 | | radical SAM family enzyme | 0.22 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | 0.66 | 39 |
| Magnetospirillum magneticum AMB-1 | 0.42 | AMB_RS05715 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.26 | AMB_RS15620 | | RluA family pseudouridine synthase | low | > 64 |
| Sinorhizobium meliloti 1021 | 0.41 | SMc03831 | | hypothetical protein | 0.28 | SMc01275 | | ribosomal large subunit pseudouridine synthase C protein | low | > 103 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.41 | A4249_RS12865 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.24 | A4249_RS07865 | | RluA family pseudouridine synthase | low | > 48 |
| Sphingomonas koreensis DSMZ 15582 | 0.41 | Ga0059261_1407 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase | 0.24 | Ga0059261_1033 | | pseudouridine synthase, RluA family | — | — |
| Rhizobium sp. OAE497 | 0.41 | ABIE40_RS18200 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.30 | ABIE40_RS09915 | | RluA family pseudouridine synthase | low | > 107 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.32 | DVU2904 | | radical SAM enzyme, Cfr family (TIGR) | 0.21 | DVU3191 | rluC | ribosomal large subunit pseudouridine synthase C (TIGR) | low | > 55 |
| Fusobacterium nucleatum SB010 | 0.29 | HUW76_07445 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | 0.22 | HUW76_04985 | | RluA family pseudouridine synthase | low | > 35 |
Not shown: 16 genomes with orthologs for PP_0850 only; 1 genomes with orthologs for PP_1906 only