Conservation of cofitness between PP_5114 and PP_0066 in Pseudomonas putida KT2440

79 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5114 putative adenine methyltransferase 1.0 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.66 2
Pseudomonas syringae pv. syringae B728a 0.67 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.82 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.67 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.82 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas stutzeri RCH2 0.66 Psest_0255 RNA methyltransferase, RsmD family 0.80 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB — —
Pseudomonas sp. S08-1 0.65 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.73 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 80
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.84 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.38 4
Pseudomonas fluorescens SBW25 0.63 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.83 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.47 46
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.83 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.45 1
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.84 AO356_11275 16S rRNA methyltransferase 0.74 1
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.83 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.46 19
Pseudomonas sp. RS175 0.62 PFR28_04262 Ribosomal RNA small subunit methyltransferase D 0.83 PFR28_04663 Ribosomal RNA small subunit methyltransferase B 0.42 2
Pseudomonas simiae WCS417 0.62 PS417_26825 16S rRNA methyltransferase 0.83 PS417_00085 16S rRNA methyltransferase — —
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.83 AO353_10630 16S rRNA methyltransferase 0.62 1
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.83 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) — —
Pectobacterium carotovorum WPP14 0.48 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Rahnella sp. WP5 0.48 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase 0.46 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.30 43
Serratia liquefaciens MT49 0.47 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase 0.46 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Dickeya dianthicola 67-19 0.46 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 71
Dickeya dadantii 3937 0.46 DDA3937_RS00630 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.47 64
Dickeya dianthicola ME23 0.46 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.41 6
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.44 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B 0.80 29
Marinobacter adhaerens HP15 0.44 HP15_3491 conserved hypothetical protein 0.42 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase low > 73
Escherichia coli ECOR38 0.43 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 85
Escherichia fergusonii Becca 0.43 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.43 EFB2_00535 Ribosomal RNA small subunit methyltransferase B low > 86
Escherichia coli ECOR27 0.43 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 57
Escherichia coli BW25113 0.43 b3465 yhhF predicted methyltransferase (NCBI) 0.44 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) 0.65 1
Escherichia coli Nissle 1917 0.43 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 52
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.46 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Escherichia coli ECRC62 0.43 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC99 0.43 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Shewanella sp. ANA-3 0.43 Shewana3_3973 putative methyltransferase (RefSeq) 0.41 Shewana3_0033 sun protein (RefSeq) 0.75 1
Escherichia coli ECRC98 0.43 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC102 0.43 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC101 0.43 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC101 0.43 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.43 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli BL21 0.43 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.44 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent 0.71 9
Shewanella oneidensis MR-1 0.43 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.40 SO0030 sun sun protein (NCBI ptt file) 0.58 2
Shewanella loihica PV-4 0.42 Shew_3607 putative methyltransferase (RefSeq) 0.40 Shew_3738 sun protein (RefSeq) 0.72 1
Pantoea sp. MT58 0.42 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.37 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 52
Erwinia tracheiphila SCR3 0.41 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Klebsiella michiganensis M5al 0.40 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 BWI76_RS25680 16S rRNA m5C967 methyltransferase low > 92
Rhodanobacter denitrificans MT42 0.39 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.34 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 63
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.38 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Shewanella amazonensis SB2B 0.39 Sama_3469 hypothetical protein (RefSeq) 0.41 Sama_0041 sun protein (RefSeq) 0.72 1
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.42 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 low > 78
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.35 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 59
Enterobacter asburiae PDN3 0.39 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.43 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.39 41
Enterobacter sp. TBS_079 0.38 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D 0.44 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B low > 85
Kangiella aquimarina DSM 16071 0.37 B158DRAFT_0443 16S rRNA m(2)G-966 methyltransferase (EC 2.1.1.52) 0.38 B158DRAFT_0396 ribosomal RNA small subunit methyltransferase RsmB low > 40
Dechlorosoma suillum PS 0.35 Dsui_1027 RNA methyltransferase, RsmD family 0.33 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB 0.44 17
Acinetobacter radioresistens SK82 0.35 MPMX26_02312 Ribosomal RNA small subunit methyltransferase D 0.37 MPMX26_03021 Ribosomal RNA small subunit methyltransferase B low > 36
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS02815 methyltransferase 0.30 BPHYT_RS01475 16S rRNA methyltransferase 0.25 21
Lysobacter sp. OAE881 0.35 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.37 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Paraburkholderia sabiae LMG 24235 0.34 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.28 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 153
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.29 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase 0.48 40
Castellaniella sp019104865 MT123 0.33 ABCV34_RS10145 RsmD family RNA methyltransferase 0.32 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 48
Paraburkholderia graminis OAS925 0.32 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase 0.29 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase 0.32 21
Acidovorax sp. GW101-3H11 0.29 Ac3H11_3873 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.25 Ac3H11_4461 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) — —
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS01990 methyltransferase 0.27 RR42_RS20450 16S rRNA methyltransferase 0.32 58
Phaeobacter inhibens DSM 17395 0.28 PGA1_c29260 ribosomal RNA small subunit methyltransferase D 0.19 PGA1_c32880 putative ribosomal RNA small subunit methyltransferase B 0.32 5
Ralstonia solanacearum PSI07 0.27 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.33 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 81
Ralstonia solanacearum IBSBF1503 0.27 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.32 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 76
Ralstonia solanacearum UW163 0.27 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.32 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.28 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 90
Ralstonia solanacearum GMI1000 0.26 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.31 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Fusobacterium nucleatum SB010 0.26 HUW76_03595 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.17 HUW76_07955 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 35
Ralstonia sp. UNC404CL21Col 0.26 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.33 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Desulfovibrio vulgaris Hildenborough JW710 0.25 DVU1531 methyltransferase, putative (TIGR) 0.14 DVU3363 sun sun protein (TIGR) 0.51 2
Brevundimonas sp. GW460-12-10-14-LB2 0.24 A4249_RS04215 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.17 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 48
Azospirillum brasilense Sp245 0.24 AZOBR_RS04500 methyltransferase 0.21 AZOBR_RS00235 MFS transporter — —
Rhodospirillum rubrum S1H 0.22 Rru_A0653 hypothetical protein (NCBI) 0.19 Rru_A3660 tRNA and rRNA cytosine-C5-methylase (NCBI) — —
Dinoroseobacter shibae DFL-12 0.22 Dshi_0115 putative methyltransferase (RefSeq) 0.19 Dshi_3033 Fmu (Sun) domain protein (RefSeq) low > 64
Azospirillum sp. SherDot2 0.22 MPMX19_01626 Ribosomal RNA small subunit methyltransferase D 0.20 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B — —
Rhodopseudomonas palustris CGA009 0.22 TX73_005985 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.20 TX73_000155 transcription antitermination factor NusB low > 86
Magnetospirillum magneticum AMB-1 0.22 AMB_RS20860 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.20 AMB_RS00745 MFS transporter low > 64
Rhizobium sp. OAE497 0.22 ABIE40_RS03765 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.19 ABIE40_RS19140 RsmB/NOP family class I SAM-dependent RNA methyltransferase low > 107
Agrobacterium fabrum C58 0.21 Atu0690 hypothetical protein 0.20 Atu2825 Sun protein 0.26 14
Mycobacterium tuberculosis H37Rv 0.20 Rv2966c Possible methyltransferase (methylase) 0.15 Rv1407 Probable Fmu protein (sun protein) — —
Synechococcus elongatus PCC 7942 0.19 Synpcc7942_1480 hypothetical protein 0.23 Synpcc7942_0962 sun sun protein 0.51 25

Not shown: 6 genomes with orthologs for PP_5114 only; 7 genomes with orthologs for PP_0066 only