Conservation of cofitness between LRK55_RS07250 and LRK55_RS09950 in Rhodanobacter denitrificans MT42

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodanobacter denitrificans MT42 1.0 LRK55_RS07250 deoxyribodipyrimidine photo-lyase 1.0 LRK55_RS09950 biosynthetic-type acetolactate synthase large subunit 0.56 20
Rhodanobacter denitrificans FW104-10B01 1.00 LRK54_RS07510 DNA photolyase family protein 1.00 LRK54_RS10310 biosynthetic-type acetolactate synthase large subunit low > 59
Rhodanobacter sp. FW510-T8 0.82 OKGIIK_13930 Deoxyribodipyrimidine photolyase 0.85 OKGIIK_13610 ilvB biosynthetic-type acetolactate synthase large subunit low > 52
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS01855 deoxyribodipyrimidine photo-lyase 0.81 ABZR86_RS15935 biosynthetic-type acetolactate synthase large subunit low > 74
Lysobacter sp. OAE881 0.53 ABIE51_RS09260 deoxyribodipyrimidine photo-lyase 0.34 ABIE51_RS17550 acetolactate synthase 2 catalytic subunit low > 62
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.3484.1 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.33 Xcc-8004.1059.1 Acetolactate synthase large subunit (EC 2.2.1.6) low > 74
Alteromonas macleodii MIT1002 0.46 MIT1002_02045 Deoxyribodipyrimidine photo-lyase 0.33 MIT1002_00503 Acetolactate synthase isozyme 3 large subunit low > 70
Caulobacter crescentus NA1000 0.45 CCNA_01495 deoxyribodipyrimidine photolyase 0.38 CCNA_02185 acetolactate synthase large subunit low > 66
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_01495 deoxyribodipyrimidine photolyase 0.38 CCNA_02185 acetolactate synthase large subunit low > 67
Azospirillum brasilense Sp245 0.44 AZOBR_RS09290 deoxyribodipyrimidine photo-lyase 0.37 AZOBR_RS06560 acetolactate synthase low > 97
Azospirillum sp. SherDot2 0.43 MPMX19_01584 Deoxyribodipyrimidine photo-lyase 0.36 MPMX19_01776 Acetolactate synthase isozyme 3 large subunit
Rhodospirillum rubrum S1H 0.43 Rru_A2903 Deoxyribodipyrimidine photolyase (NCBI) 0.38 Rru_A0467 Acetolactate synthase, large subunit, biosynthetic type (NCBI) low > 58
Agrobacterium fabrum C58 0.41 Atu1218 DNA photolyase 0.37 Atu2036 acetolactate synthase III, large subunit low > 89
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS05610 deoxyribodipyrimidine photo-lyase 0.33 A4249_RS10020 acetolactate synthase 2 catalytic subunit low > 48
Bosea sp. OAE506 0.41 ABIE41_RS15630 deoxyribodipyrimidine photo-lyase 0.37 ABIE41_RS12890 acetolactate synthase 3 large subunit
Rhizobium sp. OAE497 0.41 ABIE40_RS08320 deoxyribodipyrimidine photo-lyase 0.37 ABIE40_RS11495 acetolactate synthase 3 large subunit low > 107
Rhodopseudomonas palustris CGA009 0.40 TX73_016440 deoxyribodipyrimidine photo-lyase 0.35 TX73_010465 acetolactate synthase 3 large subunit
Dinoroseobacter shibae DFL-12 0.35 Dshi_2318 Deoxyribodipyrimidine photo-lyase (RefSeq) 0.35 Dshi_1779 acetolactate synthase, large subunit, biosynthetic type (RefSeq)
Phaeobacter inhibens DSM 17395 0.35 PGA1_c13910 deoxyribodipyrimidine photo-lyase PhrB 0.35 PGA1_c20210 acetolactate synthase isozyme 3 large subunit low > 62
Erwinia amylovora T8 0.30 OLJFJH_17015 deoxyribodipyrimidine photo-lyase 0.37 OLJFJH_06215 acetolactate synthase 2 catalytic subunit low > 58
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS09280 deoxyribodipyrimidine photo-lyase 0.34 HSERO_RS08650 acetolactate synthase 0.32 24
Pontibacter actiniarum KMM 6156, DSM 19842 0.30 CA264_08145 deoxyribodipyrimidine photo-lyase 0.30 CA264_06930 acetolactate synthase, large subunit, biosynthetic type low > 74
Rahnella sp. WP5 0.30 EX31_RS23365 deoxyribodipyrimidine photo-lyase 0.37 EX31_RS14990 acetolactate synthase 2 catalytic subunit low > 89
Serratia liquefaciens MT49 0.29 IAI46_06200 deoxyribodipyrimidine photo-lyase 0.36 IAI46_24360 acetolactate synthase 2 catalytic subunit low > 86
Marinobacter adhaerens HP15 0.29 HP15_715 deoxyribodipyrimidine photolyase 0.35 HP15_531 acetolactate synthase, large subunit, biosynthetic type low > 73
Shewanella amazonensis SB2B 0.29 Sama_0811 deoxyribodipyrimidine photo-lyase (RefSeq) 0.34 Sama_3281 acetolactate synthase 2 catalytic subunit (RefSeq) low > 62
Echinicola vietnamensis KMM 6221, DSM 17526 0.29 Echvi_2083 Deoxyribodipyrimidine photolyase 0.31 Echvi_2056 acetolactate synthase, large subunit, biosynthetic type low > 79
Klebsiella michiganensis M5al 0.29 BWI76_RS08335 deoxyribodipyrimidine photo-lyase 0.36 BWI76_RS00960 acetolactate synthase 2 catalytic subunit low > 92
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_03009 Deoxyribodipyrimidine photo-lyase 0.36 OHPLBJKB_04285 Acetolactate synthase isozyme 2 large subunit low > 73
Escherichia coli BW25113 0.28 b0708 phr deoxyribodipyrimidine photolyase, FAD-binding (NCBI) 0.33 b0077 ilvI acetolactate synthase III large subunit (NCBI) low > 76
Dechlorosoma suillum PS 0.28 Dsui_0591 deoxyribodipyrimidine photolyase 0.34 Dsui_3529 acetolactate synthase, large subunit, biosynthetic type
Escherichia coli ECRC62 0.28 BNILDI_21400 phrB deoxyribodipyrimidine photo-lyase 0.36 BNILDI_04735 ilvG acetolactate synthase 2 catalytic subunit low > 75
Escherichia coli ECRC100 0.28 OKFHMN_07025 phrB deoxyribodipyrimidine photo-lyase 0.35 OKFHMN_14655 ilvG acetolactate synthase 2 catalytic subunit low > 80
Escherichia coli ECRC101 0.28 MCAODC_26245 phrB deoxyribodipyrimidine photo-lyase 0.35 MCAODC_05160 ilvG acetolactate synthase 2 catalytic subunit low > 87
Pseudomonas sp. S08-1 0.28 OH686_07850 Deoxyribodipyrimidine photolyase 0.32 OH686_08130 acetolactate synthase, large subunit, biosynthetic type low > 80
Escherichia coli ECRC99 0.28 KEDOAH_20940 phrB deoxyribodipyrimidine photo-lyase 0.35 KEDOAH_13495 ilvG acetolactate synthase 2 catalytic subunit
Escherichia coli ECRC98 0.28 JDDGAC_10680 phrB deoxyribodipyrimidine photo-lyase 0.35 JDDGAC_18275 ilvG acetolactate synthase 2 catalytic subunit low > 86
Escherichia coli ECRC102 0.28 NIAGMN_05080 phrB deoxyribodipyrimidine photo-lyase 0.35 NIAGMN_12410 ilvG acetolactate synthase 2 catalytic subunit
Paraburkholderia sabiae LMG 24235 0.28 QEN71_RS17830 deoxyribodipyrimidine photo-lyase 0.60 QEN71_RS38255 biosynthetic-type acetolactate synthase large subunit low > 153
Synechococcus elongatus PCC 7942 0.28 Synpcc7942_0112 phr Deoxyribodipyrimidine photo-lyase type I 0.37 Synpcc7942_0139 ilvB acetolactate synthase 3 catalytic subunit
Escherichia coli BL21 0.28 ECD_00668 deoxyribodipyrimidine photolyase, FAD-binding 0.36 ECD_03646 acetolactate synthase II, valine insensitive, large subunit low > 61
Escherichia coli ECOR27 0.28 NOLOHH_23405 phrB deoxyribodipyrimidine photo-lyase 0.36 NOLOHH_06790 ilvG acetolactate synthase 2 catalytic subunit low > 75
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF647 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.34 GFF4276 Acetolactate synthase large subunit (EC 2.2.1.6)
Pectobacterium carotovorum WPP14 0.28 HER17_RS14995 deoxyribodipyrimidine photo-lyase 0.35 HER17_RS01060 acetolactate synthase 2 catalytic subunit low > 75
Erwinia tracheiphila SCR3 0.28 LU632_RS16155 phrB deoxyribodipyrimidine photo-lyase 0.36 LU632_RS24415 ilvG acetolactate synthase 2 catalytic subunit low > 74
Dickeya dadantii 3937 0.28 DDA3937_RS06405 deoxyribodipyrimidine photo-lyase 0.34 DDA3937_RS20170 acetolactate synthase 2 catalytic subunit low > 74
Acidovorax sp. GW101-3H11 0.28 Ac3H11_3983 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.31 Ac3H11_525 Acetolactate synthase large subunit (EC 2.2.1.6) low > 79
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS15885 deoxyribodipyrimidine photolyase 0.35 RR42_RS05435 acetolactate synthase 3 catalytic subunit
Pseudomonas putida KT2440 0.28 PP_0739 deoxyribodipyrimidine photolyase 0.33 PP_4680 acetohydroxybutanoate synthase / acetolactate synthase low > 96
Pantoea sp. MT58 0.27 IAI47_13815 deoxyribodipyrimidine photo-lyase 0.37 IAI47_01020 acetolactate synthase 2 catalytic subunit low > 76
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_1589 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.32 PfGW456L13_1538 Acetolactate synthase large subunit (EC 2.2.1.6) low > 87
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_2927 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.32 Pf1N1B4_2878 Acetolactate synthase large subunit (EC 2.2.1.6) low > 87
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS17545 deoxyribodipyrimidine photolyase 0.29 CA265_RS15805 acetolactate synthase, large subunit, biosynthetic type low > 88
Variovorax sp. OAS795 0.27 ABID97_RS24680 deoxyribodipyrimidine photo-lyase 0.32 ABID97_RS12545 biosynthetic-type acetolactate synthase large subunit low > 91
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS03715 deoxyribodipyrimidine photo-lyase 0.32 PFLU_RS25650 acetolactate synthase 3 large subunit
Pseudomonas sp. RS175 0.27 PFR28_03648 Deoxyribodipyrimidine photo-lyase 0.33 PFR28_03699 Acetolactate synthase isozyme 3 large subunit low > 88
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_14820 deoxyribodipyrimidine photolyase 0.32 AO353_14495 acetolactate synthase 3 catalytic subunit low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_0961 deoxyribodipyrimidine photo-lyase type I 0.33 Psyr_0846 acetolactate synthase, large subunit low > 86
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS21110 deoxyribodipyrimidine photo-lyase 0.31 ABZR88_RS11580 biosynthetic-type acetolactate synthase large subunit low > 71
Pseudomonas fluorescens SBW25 0.27 PFLU_RS03715 deoxyribodipyrimidine photo-lyase 0.32 PFLU_RS25650 acetolactate synthase 3 large subunit
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_0961 deoxyribodipyrimidine photo-lyase type I 0.33 Psyr_0846 acetolactate synthase, large subunit 0.36 25
Enterobacter sp. TBS_079 0.27 MPMX20_01343 Deoxyribodipyrimidine photo-lyase 0.35 MPMX20_04502 Acetolactate synthase isozyme 2 large subunit low > 85
Dickeya dianthicola 67-19 0.27 HGI48_RS06450 deoxyribodipyrimidine photo-lyase 0.34 HGI48_RS20310 acetolactate synthase 2 catalytic subunit low > 71
Shewanella sp. ANA-3 0.27 Shewana3_1166 deoxyribodipyrimidine photo-lyase type I (RefSeq) 0.35 Shewana3_0356 acetolactate synthase 2 catalytic subunit (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2E2 0.27 Pf6N2E2_5228 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.32 Pf6N2E2_5175 Acetolactate synthase large subunit (EC 2.2.1.6) low > 103
Dickeya dianthicola ME23 0.27 DZA65_RS06795 deoxyribodipyrimidine photo-lyase 0.34 DZA65_RS21350 acetolactate synthase 2 catalytic subunit low > 75
Escherichia coli ECOR38 0.27 HEPCGN_01190 phrB deoxyribodipyrimidine photo-lyase 0.35 HEPCGN_13365 ilvG acetolactate synthase 2 catalytic subunit low > 87
Escherichia fergusonii Becca 0.27 EFB2_03395 Deoxyribodipyrimidine photo-lyase 0.36 EFB2_04868 Acetolactate synthase isozyme 2 large subunit low > 86
Escherichia coli Nissle 1917 0.27 ECOLIN_RS03790 deoxyribodipyrimidine photo-lyase 0.36 ECOLIN_RS21650 acetolactate synthase 2 catalytic subunit low > 55
Pseudomonas simiae WCS417 0.27 PS417_03665 deoxyribodipyrimidine photolyase 0.32 PS417_23810 acetolactate synthase 3 catalytic subunit low > 88
Enterobacter asburiae PDN3 0.26 EX28DRAFT_2278 Deoxyribodipyrimidine photolyase 0.36 EX28DRAFT_4440 acetolactate synthase, large subunit (EC 2.2.1.6) low > 76
Paraburkholderia graminis OAS925 0.26 ABIE53_004843 deoxyribodipyrimidine photo-lyase 0.50 ABIE53_002578 acetolactate synthase-1/2/3 large subunit low > 113
Pseudomonas stutzeri RCH2 0.26 Psest_2397 Deoxyribodipyrimidine photolyase 0.33 Psest_1036 acetolactate synthase, large subunit, biosynthetic type
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_16530 deoxyribodipyrimidine photolyase 0.33 AO356_16170 acetolactate synthase 3 catalytic subunit low > 104
Acinetobacter radioresistens SK82 0.26 MPMX26_01004 Deoxyribodipyrimidine photo-lyase 0.35 MPMX26_00472 Acetolactate synthase isozyme 3 large subunit low > 36
Ralstonia sp. UNC404CL21Col 0.26 ABZR87_RS08600 deoxyribodipyrimidine photo-lyase 0.36 ABZR87_RS14955 acetolactate synthase 3 catalytic subunit low > 80
Shewanella loihica PV-4 0.26 Shew_1479 deoxyribodipyrimidine photo-lyase (RefSeq) 0.34 Shew_0289 acetolactate synthase 2 catalytic subunit (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.26 GFF4612 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.36 GFF2904 Acetolactate synthase large subunit (EC 2.2.1.6) low > 78
Shewanella oneidensis MR-1 0.26 SO3384 phrB deoxyribodipyrimidine photolyase (NCBI ptt file) 0.35 SO4347 ilvG acetolactate synthase II, large subunit (NCBI ptt file) low > 76
Ralstonia solanacearum IBSBF1503 0.26 RALBFv3_RS12600 deoxyribodipyrimidine photo-lyase 0.35 RALBFv3_RS03050 acetolactate synthase 3 large subunit
Ralstonia solanacearum UW163 0.26 UW163_RS00965 deoxyribodipyrimidine photo-lyase 0.35 UW163_RS10675 acetolactate synthase 3 large subunit
Burkholderia phytofirmans PsJN 0.26 BPHYT_RS33665 deoxyribodipyrimidine photo-lyase 0.61 BPHYT_RS10500 acetolactate synthase low > 109
Variovorax sp. SCN45 0.25 GFF2156 Deoxyribodipyrimidine photolyase (EC 4.1.99.3) 0.34 GFF1597 Acetolactate synthase large subunit (EC 2.2.1.6) low > 127
Paraburkholderia bryophila 376MFSha3.1 0.25 H281DRAFT_06033 deoxyribodipyrimidine photo-lyase type I 0.59 H281DRAFT_00356 acetolactate synthase, large subunit 0.25 94
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_14320 deoxyribodipyrimidine photo-lyase 0.34 CSW01_12565 acetolactate synthase 3 large subunit low > 62

Not shown: 1 genomes with orthologs for LRK55_RS07250 only; 18 genomes with orthologs for LRK55_RS09950 only