| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pantoea sp. MT58 | 1.0 | IAI47_11310 | | redox-regulated ATPase YchF | 1.0 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.53 | 2 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.95 | GFF2784 | | GTP-binding and nucleic acid-binding protein YchF | 0.85 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.78 | 6 |
| Dickeya dianthicola ME23 | 0.94 | DZA65_RS11435 | | redox-regulated ATPase YchF | 0.88 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Dickeya dianthicola 67-19 | 0.94 | HGI48_RS10975 | | redox-regulated ATPase YchF | 0.87 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.65 | 12 |
| Dickeya dadantii 3937 | 0.94 | DDA3937_RS11035 | | redox-regulated ATPase YchF | 0.88 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.63 | 2 |
| Erwinia tracheiphila SCR3 | 0.94 | LU632_RS13950 | ychF | redox-regulated ATPase YchF | 0.86 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Escherichia coli ECOR27 | 0.93 | NOLOHH_20650 | ychF | redox-regulated ATPase YchF | 0.87 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECRC98 | 0.93 | JDDGAC_06165 | ychF | redox-regulated ATPase YchF | 0.87 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli BW25113 | 0.93 | b1203 | ychF | translation-associated GTPase (NCBI) | 0.87 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | — | — |
| Escherichia coli ECRC101 | 0.93 | OKFHMN_28410 | ychF | redox-regulated ATPase YchF | 0.87 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECRC99 | 0.93 | KEDOAH_25405 | ychF | redox-regulated ATPase YchF | 0.87 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECRC101 | 0.93 | MCAODC_21850 | ychF | redox-regulated ATPase YchF | 0.87 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.93 | OHPLBJKB_02484 | | Ribosome-binding ATPase YchF | 0.87 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | low | > 73 |
| Escherichia coli ECRC102 | 0.93 | NIAGMN_27825 | ychF | redox-regulated ATPase YchF | 0.87 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECOR38 | 0.93 | HEPCGN_24875 | ychF | redox-regulated ATPase YchF | 0.87 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia fergusonii Becca | 0.93 | EFB2_02724 | | Ribosome-binding ATPase YchF | 0.87 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Escherichia coli Nissle 1917 | 0.93 | ECOLIN_RS07280 | | redox-regulated ATPase YchF | 0.87 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECRC62 | 0.93 | BNILDI_18805 | ychF | redox-regulated ATPase YchF | 0.87 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli BL21 | 0.93 | ECD_01178 | | catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated | 0.87 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | — | — |
| Pectobacterium carotovorum WPP14 | 0.93 | HER17_RS10445 | | redox-regulated ATPase YchF | 0.87 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Serratia liquefaciens MT49 | 0.91 | IAI46_10240 | | redox-regulated ATPase YchF | 0.89 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Rahnella sp. WP5 | 0.90 | EX31_RS07380 | | redox-regulated ATPase YchF | 0.87 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.43 | 32 |
| Enterobacter asburiae PDN3 | 0.89 | EX28DRAFT_0821 | | GTP-binding protein YchF | 0.85 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | — | — |
| Enterobacter sp. TBS_079 | 0.89 | MPMX20_02645 | | Ribosome-binding ATPase YchF | 0.85 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | 0.51 | 22 |
| Klebsiella michiganensis M5al | 0.89 | BWI76_RS17485 | | GTP-binding protein YchF | 0.85 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | — | — |
| Shewanella amazonensis SB2B | 0.81 | Sama_2571 | | GTP-dependent nucleic acid-binding protein EngD (RefSeq) | 0.62 | Sama_2605 | | pseudouridylate synthase (RefSeq) | — | — |
| Alteromonas macleodii MIT1002 | 0.81 | MIT1002_01504 | | Ribosome-binding ATPase YchF | 0.64 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | low | > 70 |
| Shewanella sp. ANA-3 | 0.80 | Shewana3_1012 | | GTP-dependent nucleic acid-binding protein EngD (RefSeq) | 0.63 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | 0.53 | 35 |
| Shewanella loihica PV-4 | 0.78 | Shew_2919 | | translation-associated GTPase (RefSeq) | 0.63 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | 0.64 | 5 |
| Marinobacter adhaerens HP15 | 0.75 | HP15_704 | | translation-associated GTPase | 0.51 | HP15_527 | | pseudouridine synthase, RluA family | low | > 73 |
| Vibrio cholerae E7946 ATCC 55056 | 0.74 | CSW01_10875 | | redox-regulated ATPase YchF | 0.70 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | low | > 62 |
| Pseudomonas sp. S08-1 | 0.73 | OH686_07965 | | GTP-binding and nucleic acid-binding protein YchF | 0.55 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | low | > 80 |
| Pseudomonas putida KT2440 | 0.73 | PP_0719 | | ribosome-associated potassium-dependent informational ATP/GTPase | 0.53 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | — | — |
| Kangiella aquimarina DSM 16071 | 0.73 | B158DRAFT_2052 | | GTP-binding protein YchF | 0.53 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | low | > 40 |
| Acinetobacter radioresistens SK82 | 0.72 | MPMX26_01861 | | Ribosome-binding ATPase YchF | 0.42 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | low | > 36 |
| Pseudomonas stutzeri RCH2 | 0.72 | Psest_1103 | | GTP-binding protein YchF | 0.53 | Psest_0709 | | pseudouridine synthase, RluA family | 0.25 | 12 |
| Pseudomonas fluorescens FW300-N2E3 | 0.72 | AO353_14740 | | GTP-binding protein | 0.54 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | 0.45 | 16 |
| Pseudomonas sp. RS175 | 0.72 | PFR28_03664 | | Ribosome-binding ATPase YchF | 0.54 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.72 | Pf1N1B4_2912 | | GTP-binding and nucleic acid-binding protein YchF | 0.54 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.72 | PfGW456L13_1574 | | GTP-binding and nucleic acid-binding protein YchF | 0.54 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.71 | AO356_16450 | | GTP-binding protein | 0.55 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | 0.46 | 10 |
| Pseudomonas syringae pv. syringae B728a | 0.71 | Psyr_0941 | | Conserved hypothetical protein 92 | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.71 | ABZR86_RS22010 | | redox-regulated ATPase YchF | 0.50 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.40 | 65 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.71 | Psyr_0941 | | Conserved hypothetical protein 92 | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas simiae WCS417 | 0.71 | PS417_03560 | | GTP-binding protein | 0.54 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Ralstonia sp. UNC404CL21Col | 0.71 | ABZR87_RS02220 | | redox-regulated ATPase YchF | 0.38 | ABZR87_RS13315 | | RluA family pseudouridine synthase | 0.62 | 41 |
| Ralstonia solanacearum GMI1000 | 0.71 | RS_RS14520 | | redox-regulated ATPase YchF | 0.39 | RS_RS08205 | | RluA family pseudouridine synthase | low | > 80 |
| Lysobacter sp. OAE881 | 0.70 | ABIE51_RS05745 | | redox-regulated ATPase YchF | 0.51 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 62 |
| Pseudomonas fluorescens SBW25 | 0.70 | PFLU_RS03610 | | redox-regulated ATPase YchF | 0.54 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.70 | PFLU_RS03610 | | redox-regulated ATPase YchF | 0.54 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Castellaniella sp019104865 MT123 | 0.70 | ABCV34_RS09215 | | redox-regulated ATPase YchF | 0.34 | ABCV34_RS01885 | | RluA family pseudouridine synthase | — | — |
| Ralstonia solanacearum UW163 | 0.70 | UW163_RS07055 | | redox-regulated ATPase YchF | 0.39 | UW163_RS14830 | | RluA family pseudouridine synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.70 | RALBFv3_RS06570 | | redox-regulated ATPase YchF | 0.39 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | 0.33 | 35 |
| Ralstonia solanacearum PSI07 | 0.69 | RPSI07_RS10660 | | redox-regulated ATPase YchF | 0.39 | RPSI07_RS15970 | | RluA family pseudouridine synthase | low | > 81 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.69 | Xcc-8004.4168.1 | | GTP-binding and nucleic acid-binding protein YchF | 0.50 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 74 |
| Herbaspirillum seropedicae SmR1 | 0.69 | HSERO_RS20405 | | GTP-binding protein YchF | 0.37 | HSERO_RS15070 | | ribosomal large subunit pseudouridine synthase D | low | > 78 |
| Variovorax sp. SCN45 | 0.69 | GFF2141 | | GTP-binding and nucleic acid-binding protein YchF | 0.29 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | 0.81 | 90 |
| Rhodanobacter denitrificans MT42 | 0.68 | LRK55_RS03425 | | redox-regulated ATPase YchF | 0.50 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 63 |
| Rhodanobacter sp. FW510-T8 | 0.68 | OKGIIK_10565 | | Ribosome-binding ATPase YchF | 0.48 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.68 | LRK54_RS03675 | | redox-regulated ATPase YchF | 0.50 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 59 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.68 | GFF630 | | GTP-binding and nucleic acid-binding protein YchF | 0.34 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 90 |
| Variovorax sp. OAS795 | 0.68 | ABID97_RS24750 | | redox-regulated ATPase YchF | 0.28 | ABID97_RS14190 | | RluA family pseudouridine synthase | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.65 | Ac3H11_4001 | | GTP-binding and nucleic acid-binding protein YchF | 0.32 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.60 | CA264_07495 | | GTP-binding protein YchF | 0.28 | CA264_15205 | | RNA pseudouridine synthase | low | > 74 |
| Sinorhizobium meliloti 1021 | 0.59 | SMc02695 | | GTP-dependent nucleic acid-binding protein EngD | 0.32 | SMc00647 | | ribosomal large subunit pseudouridine synthase | 0.88 | 2 |
| Phaeobacter inhibens DSM 17395 | 0.59 | PGA1_c04950 | | GTP-dependent nucleic acid-binding protein EngD | 0.32 | PGA1_c09000 | | ribosomal large subunit pseudouridine synthase D | 0.30 | 50 |
| Rhodopseudomonas palustris CGA009 | 0.59 | TX73_022570 | | redox-regulated ATPase YchF | 0.33 | TX73_001905 | | RluA family pseudouridine synthase | low | > 86 |
| Dinoroseobacter shibae DFL-12 | 0.58 | Dshi_0954 | | GTP-binding protein YchF (RefSeq) | 0.27 | Dshi_2610 | | pseudouridine synthase, RluA family (RefSeq) | — | — |
| Fusobacterium nucleatum SB010 | 0.58 | HUW76_08540 | | redox-regulated ATPase YchF | 0.30 | HUW76_08575 | | RluA family pseudouridine synthase | low | > 35 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.58 | ABZR88_RS14155 | | redox-regulated ATPase YchF | 0.27 | ABZR88_RS03985 | | RluA family pseudouridine synthase | low | > 71 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.58 | Echvi_2525 | | GTP-binding protein YchF | 0.29 | Echvi_0642 | | pseudouridine synthase, RluA family | low | > 79 |
| Bacteroides ovatus ATCC 8483 | 0.57 | BACOVA_02821 | | GTP-binding protein YchF | 0.29 | BACOVA_03528 | | pseudouridine synthase, RluA family | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.57 | BT3116 | | GTP-binding protein (NCBI ptt file) | 0.29 | BT3712 | | ribosomal large subunit pseudouridine synthase D (NCBI ptt file) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.57 | AMB_RS21985 | | redox-regulated ATPase YchF | 0.32 | AMB_RS16095 | | RluA family pseudouridine synthase | — | — |
| Azospirillum sp. SherDot2 | 0.57 | MPMX19_01641 | | Ribosome-binding ATPase YchF | 0.35 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.57 | CA265_RS13275 | | redox-regulated ATPase YchF | 0.27 | CA265_RS14415 | | pseudouridine synthase | low | > 88 |
| Synechococcus elongatus PCC 7942 | 0.56 | Synpcc7942_0554 | ychF | translation-associated GTPase | 0.31 | Synpcc7942_1112 | | ribosomal large subunit pseudouridine synthase D | low | > 38 |
| Phocaeicola dorei CL03T12C01 | 0.56 | ABI39_RS05450 | | redox-regulated ATPase YchF | 0.30 | ABI39_RS02845 | | RluA family pseudouridine synthase | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.56 | HMPREF1058_RS11490 | | redox-regulated ATPase YchF | 0.29 | HMPREF1058_RS08615 | | RluA family pseudouridine synthase | low | > 67 |
| Rhizobium sp. OAE497 | 0.56 | ABIE40_RS13100 | | redox-regulated ATPase YchF | 0.34 | ABIE40_RS14790 | | RluA family pseudouridine synthase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.56 | Ga0059261_3227 | | GTP-binding protein YchF | 0.35 | Ga0059261_0664 | | pseudouridine synthase, RluA family | low | > 68 |
| Rhodospirillum rubrum S1H | 0.56 | Rru_A3748 | | hypothetical protein (NCBI) | 0.32 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | low | > 58 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.55 | A4249_RS09035 | | redox-regulated ATPase YchF | 0.27 | A4249_RS10060 | | RluA family pseudouridine synthase | low | > 48 |
| Caulobacter crescentus NA1000 Δfur | 0.55 | CCNA_00512 | | GTP-binding protein, probable translation factor | 0.30 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | low | > 67 |
| Caulobacter crescentus NA1000 | 0.55 | CCNA_00512 | | GTP-binding protein, probable translation factor | 0.30 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | low | > 66 |
| Agrobacterium fabrum C58 | 0.55 | Atu2233 | | GTP-binding protein | 0.32 | Atu2443 | | ribosomal large subunit pseudouridine synthase, RluD subfamily | — | — |
| Bosea sp. OAE506 | 0.55 | ABIE41_RS11295 | | redox-regulated ATPase YchF | 0.30 | ABIE41_RS05635 | | RluA family pseudouridine synthase | — | — |
| Bacteroides stercoris CC31F | 0.52 | HMPREF1181_RS02000 | | redox-regulated ATPase YchF | 0.29 | HMPREF1181_RS03250 | | RluA family pseudouridine synthase | low | > 56 |
| Bifidobacterium breve UCC2003 | 0.47 | BBR_RS14650 | | redox-regulated ATPase YchF | 0.19 | BBR_RS17135 | | RluA family pseudouridine synthase | — | — |
| Mycobacterium tuberculosis H37Rv | 0.43 | Rv1112 | | Probable GTP binding protein | 0.21 | Rv1540 | | Conserved hypothetical protein member of yabO/yceC/yfiI family | — | — |
Not shown: 11 genomes with orthologs for IAI47_11310 only; 3 genomes with orthologs for IAI47_04425 only