| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS04220 | | epoxyqueuosine reductase | 1.0 | HSERO_RS17905 | | tRNA-dihydrouridine synthase A | 0.34 | 9 |
| Paraburkholderia sabiae LMG 24235 | 0.65 | QEN71_RS02745 | | tRNA epoxyqueuosine(34) reductase QueG | 0.66 | QEN71_RS22650 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.64 | ABIE53_003363 | | epoxyqueuosine reductase | 0.65 | ABIE53_001975 | | tRNA-dihydrouridine synthase A | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.63 | BPHYT_RS15960 | | iron-sulfur cluster binding protein | 0.67 | BPHYT_RS08700 | | tRNA-dihydrouridine synthase A | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.63 | RR42_RS03405 | | epoxyqueuosine reductase | 0.64 | RR42_RS12665 | | tRNA-dihydrouridine synthase A | low | > 128 |
| Ralstonia solanacearum PSI07 | 0.63 | RPSI07_RS12175 | | tRNA epoxyqueuosine(34) reductase QueG | 0.68 | RPSI07_RS17630 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.63 | RS_RS12740 | | tRNA epoxyqueuosine(34) reductase QueG | 0.68 | RS_RS06510 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 80 |
| Ralstonia sp. UNC404CL21Col | 0.63 | ABZR87_RS00775 | | tRNA epoxyqueuosine(34) reductase QueG | 0.67 | ABZR87_RS11300 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.62 | H281DRAFT_04128 | | epoxyqueuosine reductase | 0.65 | H281DRAFT_00766 | | tRNA-U16,U17-dihydrouridine synthase | low | > 103 |
| Ralstonia solanacearum UW163 | 0.62 | UW163_RS08505 | | tRNA epoxyqueuosine(34) reductase QueG | 0.68 | UW163_RS13175 | | tRNA dihydrouridine(20/20a) synthase DusA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.62 | RALBFv3_RS05120 | | tRNA epoxyqueuosine(34) reductase QueG | 0.68 | RALBFv3_RS15730 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 76 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.61 | GFF5474 | | Epoxyqueuosine (oQ) reductase QueG | 0.55 | GFF4791 | | tRNA dihydrouridine synthase A | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.60 | Ac3H11_306 | | Epoxyqueuosine (oQ) reductase QueG | 0.55 | Ac3H11_2288 | | tRNA dihydrouridine synthase A | low | > 79 |
| Variovorax sp. OAS795 | 0.59 | ABID97_RS20285 | | tRNA epoxyqueuosine(34) reductase QueG | 0.60 | ABID97_RS13915 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 91 |
| Pseudomonas sp. S08-1 | 0.59 | OH686_09500 | | epoxyqueuosine reductase | 0.51 | OH686_22745 | | tRNA-dihydrouridine(20/20a) synthase | low | > 80 |
| Pseudomonas syringae pv. syringae B728a | 0.59 | Psyr_0566 | | 4Fe-4S cluster binding protein | 0.53 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.59 | Psyr_0566 | | 4Fe-4S cluster binding protein | 0.53 | Psyr_1936 | | tRNA-U16,U17-dihydrouridine synthase | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.58 | ABZR86_RS00835 | | tRNA epoxyqueuosine(34) reductase QueG | 0.49 | ABZR86_RS18350 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 74 |
| Castellaniella sp019104865 MT123 | 0.58 | ABCV34_RS13905 | | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | ABCV34_RS04335 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 48 |
| Pseudomonas fluorescens FW300-N1B4 | 0.57 | Pf1N1B4_1418 | | Epoxyqueuosine (oQ) reductase QueG | 0.51 | Pf1N1B4_57 | | tRNA dihydrouridine synthase A | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.57 | AO353_13115 | | epoxyqueuosine reductase | 0.51 | AO353_00295 | | tRNA-dihydrouridine synthase A | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.57 | PFLU_RS02540 | | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.34 | 38 |
| Pseudomonas fluorescens SBW25 | 0.57 | PFLU_RS02540 | | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | PFLU_RS07810 | | tRNA dihydrouridine(20/20a) synthase DusA | 0.85 | 12 |
| Pseudomonas sp. RS175 | 0.57 | PFR28_05115 | | Epoxyqueuosine reductase | 0.50 | PFR28_01143 | | tRNA-dihydrouridine(20/20a) synthase | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.57 | PfGW456L13_160 | | Epoxyqueuosine (oQ) reductase QueG | 0.47 | PfGW456L13_3987 | | tRNA dihydrouridine synthase A | low | > 87 |
| Pseudomonas simiae WCS417 | 0.57 | PS417_02460 | | epoxyqueuosine reductase | 0.51 | PS417_07740 | | tRNA-dihydrouridine synthase A | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.57 | AO356_08685 | | epoxyqueuosine reductase | 0.50 | AO356_02170 | | tRNA-dihydrouridine synthase A | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.56 | Pf6N2E2_3620 | | Epoxyqueuosine (oQ) reductase QueG | 0.50 | Pf6N2E2_2257 | | tRNA dihydrouridine synthase A | low | > 103 |
| Rhodanobacter denitrificans FW104-10B01 | 0.55 | LRK54_RS15130 | | tRNA epoxyqueuosine(34) reductase QueG | 0.49 | LRK54_RS05995 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 59 |
| Serratia liquefaciens MT49 | 0.55 | IAI46_01595 | | tRNA epoxyqueuosine(34) reductase QueG | 0.52 | IAI46_22970 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 86 |
| Rhodanobacter sp. FW510-T8 | 0.55 | OKGIIK_03900 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | OKGIIK_00625 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | low | > 52 |
| Escherichia coli ECRC98 | 0.55 | JDDGAC_15925 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | JDDGAC_16580 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | low | > 86 |
| Escherichia coli ECOR38 | 0.55 | HEPCGN_10515 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | HEPCGN_11560 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | low | > 87 |
| Escherichia coli ECRC102 | 0.55 | NIAGMN_10135 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | NIAGMN_10790 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | — | — |
| Pseudomonas stutzeri RCH2 | 0.55 | Psest_0677 | | iron-sulfur cluster binding protein, putative | 0.53 | Psest_2706 | | tRNA dihydrouridine synthase A | low | > 67 |
| Escherichia coli ECRC100 | 0.55 | OKFHMN_12285 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | OKFHMN_12945 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | low | > 80 |
| Rhodanobacter denitrificans MT42 | 0.55 | LRK55_RS14845 | | tRNA epoxyqueuosine(34) reductase QueG | 0.49 | LRK55_RS05750 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 63 |
| Escherichia coli ECRC99 | 0.55 | KEDOAH_15870 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | KEDOAH_15205 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | — | — |
| Variovorax sp. SCN45 | 0.55 | GFF4805 | | Epoxyqueuosine reductase (EC 1.17.99.6) QueG | 0.59 | GFF928 | | tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) | low | > 127 |
| Escherichia coli BL21 | 0.55 | ECD_04033 | | epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis | 0.51 | ECD_03921 | | tRNA-dihydrouridine synthase A | low | > 61 |
| Escherichia coli ECOR27 | 0.55 | NOLOHH_04550 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | NOLOHH_05195 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | low | > 75 |
| Escherichia coli ECRC62 | 0.55 | BNILDI_06940 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | BNILDI_06330 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | low | > 75 |
| Escherichia coli ECRC101 | 0.55 | MCAODC_02800 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.50 | MCAODC_03455 | dusA | tRNA dihydrouridine(20/20a) synthase DusA | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_03876 | | Epoxyqueuosine reductase | 0.51 | OHPLBJKB_03994 | | tRNA-dihydrouridine(20/20a) synthase | low | > 73 |
| Escherichia coli BW25113 | 0.55 | b4166 | yjeS | predicted Fe-S electron transport protein (NCBI) | 0.51 | b4049 | dusA | tRNA-dihydrouridine synthase A (RefSeq) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS24200 | | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | ECOLIN_RS23355 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 55 |
| Dickeya dianthicola 67-19 | 0.55 | HGI48_RS18575 | | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | HGI48_RS17540 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 71 |
| Pseudomonas putida KT2440 | 0.55 | PP_4900 | | epoxyqueuosine reductase | 0.53 | PP_2169 | | tRNA-dihydrouridine synthase A | low | > 96 |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS19710 | | tRNA epoxyqueuosine(34) reductase QueG | 0.52 | DZA65_RS18620 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 75 |
| Escherichia fergusonii Becca | 0.55 | EFB2_04369 | | Epoxyqueuosine reductase | 0.51 | EFB2_04556 | | tRNA-dihydrouridine(20/20a) synthase | low | > 86 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS18645 | | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | DDA3937_RS17480 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 74 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.54 | GFF819 | | Epoxyqueuosine (oQ) reductase QueG | 0.52 | GFF1418 | | tRNA dihydrouridine synthase A (EC 1.-.-.-) | low | > 78 |
| Klebsiella michiganensis M5al | 0.54 | BWI76_RS02505 | | tRNA epoxyqueuosine(34) reductase QueG | 0.52 | BWI76_RS01900 | | tRNA-dihydrouridine synthase A | low | > 92 |
| Marinobacter adhaerens HP15 | 0.54 | HP15_2505 | | iron-sulfur cluster binding protein | 0.52 | HP15_2240 | | tRNA-dihydrouridine synthase, TIM-barrel, YjbN | low | > 73 |
| Pectobacterium carotovorum WPP14 | 0.54 | HER17_RS02555 | | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | HER17_RS03680 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 75 |
| Shewanella oneidensis MR-1 | 0.54 | SO3861 | | iron-sulfur cluster-binding protein (NCBI ptt file) | 0.51 | SO3912 | | TIM-barrel protein, yjbN family (NCBI ptt file) | 0.47 | 4 |
| Enterobacter sp. TBS_079 | 0.53 | MPMX20_00447 | | Epoxyqueuosine reductase | 0.52 | MPMX20_00265 | | tRNA-dihydrouridine(20/20a) synthase | low | > 85 |
| Enterobacter asburiae PDN3 | 0.53 | EX28DRAFT_3363 | | epoxyqueuosine reductase | 0.52 | EX28DRAFT_4263 | | tRNA dihydrouridine synthase A | low | > 76 |
| Shewanella sp. ANA-3 | 0.53 | Shewana3_0745 | | putative iron-sulfur cluster binding protein (RefSeq) | 0.51 | Shewana3_0718 | | tRNA-dihydrouridine synthase A (RefSeq) | low | > 73 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS08045 | | tRNA epoxyqueuosine(34) reductase QueG | 0.50 | ABIE51_RS03925 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.53 | MIT1002_03794 | | Epoxyqueuosine reductase | 0.46 | MIT1002_03387 | | putative tRNA-dihydrouridine synthase | low | > 70 |
| Shewanella loihica PV-4 | 0.53 | Shew_2979 | | putative iron-sulfur cluster binding protein (RefSeq) | 0.50 | Shew_0536 | | tRNA-dihydrouridine synthase A (RefSeq) | low | > 60 |
| Vibrio cholerae E7946 ATCC 55056 | 0.52 | CSW01_01810 | | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | CSW01_01985 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.52 | Xcc-8004.2252.1 | | Epoxyqueuosine (oQ) reductase QueG | 0.48 | Xcc-8004.5010.1 | | tRNA dihydrouridine synthase A | low | > 74 |
| Pantoea sp. MT58 | 0.52 | IAI47_02560 | | tRNA epoxyqueuosine(34) reductase QueG | 0.51 | IAI47_17865 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 76 |
| Rahnella sp. WP5 | 0.52 | EX31_RS08850 | | tRNA epoxyqueuosine(34) reductase QueG | 0.52 | EX31_RS11865 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 89 |
| Shewanella amazonensis SB2B | 0.50 | Sama_2625 | | iron-sulfur cluster-binding protein (RefSeq) | 0.50 | Sama_3055 | | tRNA-dihydrouridine synthase A (RefSeq) | low | > 62 |
| Acinetobacter radioresistens SK82 | 0.48 | MPMX26_01783 | | Epoxyqueuosine reductase | 0.51 | MPMX26_00482 | | tRNA-dihydrouridine(20/20a) synthase | low | > 36 |
| Kangiella aquimarina DSM 16071 | 0.45 | B158DRAFT_0486 | | iron-sulfur cluster binding protein, putative | 0.50 | B158DRAFT_2018 | | tRNA dihydrouridine synthase A | low | > 40 |
| Rhizobium sp. OAE497 | 0.34 | ABIE40_RS01310 | | tRNA epoxyqueuosine(34) reductase QueG | 0.45 | ABIE40_RS10895 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.34 | SMc00406 | | 4Fe-4S ferredoxin | 0.38 | SMc04235 | | tRNA-dihydrouridine synthase A | 0.31 | 74 |
| Rhodospirillum rubrum S1H | 0.33 | Rru_A0279 | | 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) | 0.46 | Rru_A1621 | | Dihydrouridine synthase TIM-barrel protein yjbN (NCBI) | low | > 58 |
| Agrobacterium fabrum C58 | 0.32 | Atu0292 | | iron-sulfur cluster binding protein | 0.44 | Atu1515 | | hypothetical protein | low | > 89 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.32 | A4249_RS11375 | | tRNA epoxyqueuosine(34) reductase QueG | 0.45 | A4249_RS10515 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 48 |
| Caulobacter crescentus NA1000 Δfur | 0.32 | CCNA_03753 | | iron-sulfur cluster-binding protein | 0.44 | CCNA_01364 | | NIFR3-like protein | low | > 67 |
| Caulobacter crescentus NA1000 | 0.32 | CCNA_03753 | | iron-sulfur cluster-binding protein | 0.44 | CCNA_01364 | | NIFR3-like protein | low | > 66 |
| Rhodopseudomonas palustris CGA009 | 0.31 | TX73_000215 | | tRNA epoxyqueuosine(34) reductase QueG | 0.47 | TX73_010150 | | tRNA dihydrouridine(20/20a) synthase DusA | low | > 86 |
| Phaeobacter inhibens DSM 17395 | 0.31 | PGA1_c34310 | | Uncharacterized Fe-S protein | 0.43 | PGA1_c19230 | | tRNA-dihydrouridine synthase A | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.30 | Dshi_3307 | | domain of unknown function DUF1730 (RefSeq) | 0.42 | Dshi_2512 | | TIM-barrel protein, yjbN family (RefSeq) | low | > 64 |
| Synechococcus elongatus PCC 7942 | 0.27 | Synpcc7942_0530 | | 4Fe-4S cluster binding | 0.51 | Synpcc7942_2066 | | tRNA-dihydrouridine synthase A | 0.56 | 3 |
Not shown: 9 genomes with orthologs for HSERO_RS04220 only; 4 genomes with orthologs for HSERO_RS17905 only