Conservation of cofitness between HSERO_RS03615 and HSERO_RS17905 in Herbaspirillum seropedicae SmR1

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS03615 (dimethylallyl)adenosine tRNA methylthiotransferase 1.0 HSERO_RS17905 tRNA-dihydrouridine synthase A 0.33 4
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS02195 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.66 QEN71_RS22650 tRNA dihydrouridine(20/20a) synthase DusA low > 153
Hydrogenophaga sp. GW460-11-11-14-LB1 0.75 GFF613 tRNA-i(6)A37 methylthiotransferase 0.55 GFF4791 tRNA dihydrouridine synthase A low > 90
Paraburkholderia bryophila 376MFSha3.1 0.75 H281DRAFT_04239 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.65 H281DRAFT_00766 tRNA-U16,U17-dihydrouridine synthase low > 103
Burkholderia phytofirmans PsJN 0.75 BPHYT_RS16535 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.67 BPHYT_RS08700 tRNA-dihydrouridine synthase A low > 109
Ralstonia solanacearum PSI07 0.73 RPSI07_RS21380 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.68 RPSI07_RS17630 tRNA dihydrouridine(20/20a) synthase DusA low > 81
Ralstonia solanacearum IBSBF1503 0.73 RALBFv3_RS11825 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.68 RALBFv3_RS15730 tRNA dihydrouridine(20/20a) synthase DusA low > 76
Ralstonia solanacearum UW163 0.73 UW163_RS01760 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.68 UW163_RS13175 tRNA dihydrouridine(20/20a) synthase DusA — —
Cupriavidus basilensis FW507-4G11 0.73 RR42_RS02855 dimethylallyladenosine tRNA methylthiotransferase 0.64 RR42_RS12665 tRNA-dihydrouridine synthase A low > 128
Ralstonia solanacearum GMI1000 0.73 RS_RS02645 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.68 RS_RS06510 tRNA dihydrouridine(20/20a) synthase DusA low > 80
Ralstonia sp. UNC404CL21Col 0.73 ABZR87_RS07780 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.67 ABZR87_RS11300 tRNA dihydrouridine(20/20a) synthase DusA low > 80
Acidovorax sp. GW101-3H11 0.72 Ac3H11_4008 tRNA-i(6)A37 methylthiotransferase 0.55 Ac3H11_2288 tRNA dihydrouridine synthase A low > 79
Variovorax sp. SCN45 0.71 GFF7320 tRNA-i(6)A37 methylthiotransferase (EC 2.8.4.3) 0.59 GFF928 tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) low > 127
Variovorax sp. OAS795 0.71 ABID97_RS06475 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.60 ABID97_RS13915 tRNA dihydrouridine(20/20a) synthase DusA 0.50 7
Castellaniella sp019104865 MT123 0.70 ABCV34_RS15345 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 ABCV34_RS04335 tRNA dihydrouridine(20/20a) synthase DusA 0.86 24
Rhodanobacter denitrificans MT42 0.68 LRK55_RS13465 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.49 LRK55_RS05750 tRNA dihydrouridine(20/20a) synthase DusA low > 63
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS09895 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.49 ABZR86_RS18350 tRNA dihydrouridine(20/20a) synthase DusA low > 74
Lysobacter sp. OAE881 0.67 ABIE51_RS15455 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.50 ABIE51_RS03925 tRNA dihydrouridine(20/20a) synthase DusA low > 62
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS13750 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.49 LRK54_RS05995 tRNA dihydrouridine(20/20a) synthase DusA low > 59
Rhodanobacter sp. FW510-T8 0.67 OKGIIK_02990 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.47 OKGIIK_00625 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 52
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.2224.1 tRNA-i(6)A37 methylthiotransferase 0.48 Xcc-8004.5010.1 tRNA dihydrouridine synthase A low > 74
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_0099 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.50 B158DRAFT_2018 tRNA dihydrouridine synthase A low > 40
Marinobacter adhaerens HP15 0.64 HP15_2466 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.52 HP15_2240 tRNA-dihydrouridine synthase, TIM-barrel, YjbN low > 73
Shewanella amazonensis SB2B 0.63 Sama_2575 tRNA-i(6)A37 modification enzyme MiaB (RefSeq) 0.50 Sama_3055 tRNA-dihydrouridine synthase A (RefSeq) low > 62
Pantoea sp. MT58 0.63 IAI47_13945 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 IAI47_17865 tRNA dihydrouridine(20/20a) synthase DusA low > 76
Alteromonas macleodii MIT1002 0.63 MIT1002_01480 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.46 MIT1002_03387 putative tRNA-dihydrouridine synthase low > 70
Shewanella sp. ANA-3 0.62 Shewana3_1008 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.51 Shewana3_0718 tRNA-dihydrouridine synthase A (RefSeq) low > 73
Escherichia coli ECRC62 0.62 BNILDI_21610 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 BNILDI_06330 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.86 35
Shewanella oneidensis MR-1 0.62 SO1181 miaB tRNA-i(6)A37 modification enzyme MiaB (NCBI ptt file) 0.51 SO3912 TIM-barrel protein, yjbN family (NCBI ptt file) low > 76
Pseudomonas sp. S08-1 0.62 OH686_09215 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.51 OH686_22745 tRNA-dihydrouridine(20/20a) synthase low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF4579 tRNA-i(6)A37 methylthiotransferase 0.52 GFF1418 tRNA dihydrouridine synthase A (EC 1.-.-.-) low > 78
Escherichia coli ECOR27 0.62 NOLOHH_23605 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 NOLOHH_05195 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 75
Escherichia coli ECRC98 0.62 JDDGAC_10870 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 JDDGAC_16580 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_03051 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.51 OHPLBJKB_03994 tRNA-dihydrouridine(20/20a) synthase low > 73
Escherichia coli ECRC99 0.62 KEDOAH_20745 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 KEDOAH_15205 dusA tRNA dihydrouridine(20/20a) synthase DusA — —
Escherichia coli ECRC101 0.62 MCAODC_26440 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.50 MCAODC_03455 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 87
Escherichia coli BL21 0.62 ECD_00629 tRNA-i(6)A37 methylthiotransferase 0.51 ECD_03921 tRNA-dihydrouridine synthase A low > 61
Escherichia coli ECRC100 0.62 OKFHMN_07225 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 OKFHMN_12945 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 80
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_1380 tRNA-i(6)A37 methylthiotransferase 0.47 PfGW456L13_3987 tRNA dihydrouridine synthase A low > 87
Escherichia coli BW25113 0.62 b0661 miaB isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) 0.51 b4049 dusA tRNA-dihydrouridine synthase A (RefSeq) low > 76
Escherichia coli ECOR38 0.62 HEPCGN_01005 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 HEPCGN_11560 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 87
Escherichia fergusonii Becca 0.62 EFB2_03438 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.51 EFB2_04556 tRNA-dihydrouridine(20/20a) synthase low > 86
Escherichia coli ECRC102 0.62 NIAGMN_05280 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 NIAGMN_10790 dusA tRNA dihydrouridine(20/20a) synthase DusA — —
Escherichia coli Nissle 1917 0.62 ECOLIN_RS03555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 ECOLIN_RS23355 tRNA dihydrouridine(20/20a) synthase DusA — —
Serratia liquefaciens MT49 0.62 IAI46_06025 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.52 IAI46_22970 tRNA dihydrouridine(20/20a) synthase DusA low > 86
Pseudomonas fluorescens FW300-N2E2 0.62 Pf6N2E2_5018 tRNA-i(6)A37 methylthiotransferase 0.50 Pf6N2E2_2257 tRNA dihydrouridine synthase A low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.53 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase low > 86
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_06375 (dimethylallyl)adenosine tRNA methylthiotransferase 0.51 AO353_00295 tRNA-dihydrouridine synthase A low > 101
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_15410 (dimethylallyl)adenosine tRNA methylthiotransferase 0.50 AO356_02170 tRNA-dihydrouridine synthase A low > 104
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_4345 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.53 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase low > 86
Pseudomonas sp. RS175 0.62 PFR28_03848 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.50 PFR28_01143 tRNA-dihydrouridine(20/20a) synthase low > 88
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2712 tRNA-i(6)A37 methylthiotransferase 0.51 Pf1N1B4_57 tRNA dihydrouridine synthase A low > 87
Erwinia tracheiphila SCR3 0.61 LU632_RS16305 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.48 LU632_RS23765 dusA tRNA dihydrouridine(20/20a) synthase DusA low > 74
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_04915 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 CSW01_01985 tRNA dihydrouridine(20/20a) synthase DusA low > 62
Pseudomonas simiae WCS417 0.61 PS417_24625 (dimethylallyl)adenosine tRNA methylthiotransferase 0.51 PS417_07740 tRNA-dihydrouridine synthase A low > 88
Shewanella loihica PV-4 0.61 Shew_2923 tRNA-i(6)A37 thiotransferase enzyme MiaB (RefSeq) 0.50 Shew_0536 tRNA-dihydrouridine synthase A (RefSeq) low > 60
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.32 45
Pseudomonas fluorescens SBW25 0.61 PFLU_RS26555 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA low > 109
Klebsiella michiganensis M5al 0.61 BWI76_RS08135 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.52 BWI76_RS01900 tRNA-dihydrouridine synthase A — —
Pseudomonas stutzeri RCH2 0.61 Psest_0532 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.53 Psest_2706 tRNA dihydrouridine synthase A low > 67
Pectobacterium carotovorum WPP14 0.61 HER17_RS15165 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 HER17_RS03680 tRNA dihydrouridine(20/20a) synthase DusA low > 75
Enterobacter sp. TBS_079 0.60 MPMX20_01311 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.52 MPMX20_00265 tRNA-dihydrouridine(20/20a) synthase low > 85
Dickeya dadantii 3937 0.60 DDA3937_RS06250 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 DDA3937_RS17480 tRNA dihydrouridine(20/20a) synthase DusA low > 74
Dickeya dianthicola 67-19 0.60 HGI48_RS06295 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.51 HGI48_RS17540 tRNA dihydrouridine(20/20a) synthase DusA low > 71
Enterobacter asburiae PDN3 0.60 EX28DRAFT_2310 tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB 0.52 EX28DRAFT_4263 tRNA dihydrouridine synthase A low > 76
Dickeya dianthicola ME23 0.60 DZA65_RS06640 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.52 DZA65_RS18620 tRNA dihydrouridine(20/20a) synthase DusA low > 75
Rahnella sp. WP5 0.60 EX31_RS23205 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.52 EX31_RS11865 tRNA dihydrouridine(20/20a) synthase DusA low > 89
Acinetobacter radioresistens SK82 0.56 MPMX26_02667 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.51 MPMX26_00482 tRNA-dihydrouridine(20/20a) synthase 0.67 12
Dinoroseobacter shibae DFL-12 0.45 Dshi_1019 RNA modification enzyme, MiaB family (RefSeq) 0.42 Dshi_2512 TIM-barrel protein, yjbN family (RefSeq) low > 64
Azospirillum brasilense Sp245 0.43 AZOBR_RS01475 (dimethylallyl)adenosine tRNA methylthiotransferase 0.51 AZOBR_RS15935 tRNA-dihydrouridine synthase A low > 97
Azospirillum sp. SherDot2 0.43 MPMX19_02511 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase 0.51 MPMX19_00670 tRNA-dihydrouridine(20/20a) synthase low > 112
Agrobacterium fabrum C58 0.43 Atu0356 miaB protein 0.44 Atu1515 hypothetical protein low > 89
Rhizobium sp. OAE497 0.43 ABIE40_RS01705 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.45 ABIE40_RS10895 tRNA dihydrouridine(20/20a) synthase DusA low > 107
Sinorhizobium meliloti 1021 0.43 SMc01115 (dimethylallyl)adenosine tRNA methylthiotransferase 0.38 SMc04235 tRNA-dihydrouridine synthase A low > 103
Caulobacter crescentus NA1000 0.42 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.44 CCNA_01364 NIFR3-like protein low > 66
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_00054 tRNA 2-methylthioadenosine synthase 0.44 CCNA_01364 NIFR3-like protein low > 67
Phaeobacter inhibens DSM 17395 0.42 PGA1_c04710 (dimethylallyl)adenosine tRNA methylthiotransferase MiaB 0.43 PGA1_c19230 tRNA-dihydrouridine synthase A low > 62
Bosea sp. OAE506 0.42 ABIE41_RS04495 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.44 ABIE41_RS21285 tRNA dihydrouridine(20/20a) synthase DusA low > 77
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS14720 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.45 A4249_RS10515 tRNA dihydrouridine(20/20a) synthase DusA low > 48
Rhodospirillum rubrum S1H 0.40 Rru_A3770 tRNA-i(6)A37 modification enzyme MiaB (NCBI) 0.46 Rru_A1621 Dihydrouridine synthase TIM-barrel protein yjbN (NCBI) low > 58
Synechococcus elongatus PCC 7942 0.38 Synpcc7942_2374 tRNA-i(6)A37 thiotransferase enzyme MiaB 0.51 Synpcc7942_2066 tRNA-dihydrouridine synthase A low > 38
Rhodopseudomonas palustris CGA009 0.38 TX73_002325 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 0.47 TX73_010150 tRNA dihydrouridine(20/20a) synthase DusA low > 86

Not shown: 20 genomes with orthologs for HSERO_RS03615 only; 2 genomes with orthologs for HSERO_RS17905 only