Conservation of cofitness between HSERO_RS21530 and HSERO_RS15065 in Herbaspirillum seropedicae SmR1

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS21530 cytochrome C550 1.0 HSERO_RS15065 laccase 0.68 4
Cupriavidus basilensis FW507-4G11 0.58 RR42_RS01680 cytochrome C550 0.52 RR42_RS07595 hypothetical protein 0.38 32
Ralstonia solanacearum PSI07 0.55 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase 0.42 RPSI07_RS15975 peptidoglycan editing factor PgeF low > 81
Burkholderia phytofirmans PsJN 0.55 BPHYT_RS02415 cytochrome C550 0.46 BPHYT_RS09140 laccase — —
Paraburkholderia bryophila 376MFSha3.1 0.55 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 0.43 H281DRAFT_00849 conserved hypothetical protein 0.66 6
Paraburkholderia graminis OAS925 0.55 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) 0.42 ABIE53_002063 YfiH family protein 0.50 7
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein 0.45 QEN71_RS22210 peptidoglycan editing factor PgeF 0.53 53
Ralstonia solanacearum GMI1000 0.54 RS_RS01610 D-alanyl-D-alanine carboxypeptidase 0.45 RS_RS08210 peptidoglycan editing factor PgeF low > 80
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein 0.41 ABZR87_RS13310 peptidoglycan editing factor PgeF 0.55 12
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase 0.41 RALBFv3_RS01515 peptidoglycan editing factor PgeF low > 76
Ralstonia solanacearum UW163 0.54 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase 0.41 UW163_RS14825 peptidoglycan editing factor PgeF — —
Dechlorosoma suillum PS 0.51 Dsui_0899 D-alanyl-D-alanine carboxypeptidase 0.52 Dsui_2531 uncharacterized protein, YfiH family low > 51
Variovorax sp. SCN45 0.49 GFF3627 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.41 GFF807 FIG00003370: Multicopper polyphenol oxidase low > 127
Variovorax sp. OAS795 0.49 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein 0.39 ABID97_RS12405 peptidoglycan editing factor PgeF low > 91
Acidovorax sp. GW101-3H11 0.48 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.38 Ac3H11_2305 COG1496: Uncharacterized conserved protein — —
Castellaniella sp019104865 MT123 0.48 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein 0.36 ABCV34_RS01890 peptidoglycan editing factor PgeF low > 48
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.40 GFF4798 COG1496: Uncharacterized conserved protein — —
Pseudomonas stutzeri RCH2 0.45 Psest_0516 D-alanyl-D-alanine carboxypeptidase 0.48 Psest_0710 uncharacterized protein, YfiH family — —
Pseudomonas fluorescens SBW25-INTG 0.43 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.52 PFLU_RS03875 peptidoglycan editing factor PgeF low > 109
Pseudomonas simiae WCS417 0.43 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.51 PS417_03825 laccase low > 88
Pseudomonas fluorescens SBW25 0.43 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.52 PFLU_RS03875 peptidoglycan editing factor PgeF low > 109
Pseudomonas putida KT2440 0.43 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.50 PP_0624 Uncharacterized protein YfiH low > 96
Marinobacter adhaerens HP15 0.42 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase 0.46 HP15_528 multi-copper polyphenol oxidoreductase, laccase — —
Pseudomonas sp. RS175 0.42 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.53 PFR28_03747 Polyphenol oxidase low > 88
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.52 AO356_15930 laccase 0.45 15
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.49 Psyr_0727 Protein of unknown function DUF152 low > 86
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.50 Pf6N2E2_5128 COG1496: Uncharacterized conserved protein 0.31 29
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.49 Psyr_0727 Protein of unknown function DUF152 low > 86
Pseudomonas fluorescens FW300-N2E3 0.42 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.51 AO353_14225 laccase 0.44 8
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.51 PfGW456L13_1494 COG1496: Uncharacterized conserved protein — —
Pseudomonas fluorescens FW300-N1B4 0.42 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.51 Pf1N1B4_2823 COG1496: Uncharacterized conserved protein — —
Lysobacter sp. OAE881 0.42 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein 0.43 ABIE51_RS04890 peptidoglycan editing factor PgeF low > 62
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein 0.38 ABZR86_RS10960 peptidoglycan editing factor PgeF — —
Kangiella aquimarina DSM 16071 0.41 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase 0.40 B158DRAFT_2533 Uncharacterized conserved protein — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase 0.41 LRK54_RS04960 peptidoglycan editing factor PgeF low > 59
Rhodanobacter denitrificans MT42 0.41 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein 0.41 LRK55_RS04740 peptidoglycan editing factor PgeF — —
Pseudomonas sp. S08-1 0.40 OH686_09300 D-alanyl-D-alanine carboxypeptidase 0.54 OH686_16415 Multicopper polyphenol oxidase low > 80
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase 0.40 OKGIIK_01795 pgeF peptidoglycan editing factor PgeF — —
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 0.45 CSW01_03700 multi-copper polyphenol oxidoreductase low > 62
Rahnella sp. WP5 0.38 EX31_RS07145 serine hydrolase 0.48 EX31_RS07565 polyphenol oxidase low > 89
Alteromonas macleodii MIT1002 0.38 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor 0.31 MIT1002_02678 Laccase domain protein YfiH — —
Shewanella loihica PV-4 0.38 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.37 Shew_2949 hypothetical protein (RefSeq) low > 60
Dickeya dianthicola 67-19 0.38 HGI48_RS09435 serine hydrolase 0.49 HGI48_RS16230 polyphenol oxidase low > 71
Escherichia coli ECRC99 0.37 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.50 KEDOAH_06965 yfiH purine nucleoside phosphorylase YfiH — —
Escherichia coli ECOR27 0.37 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.51 NOLOHH_12930 yfiH purine nucleoside phosphorylase YfiH low > 75
Escherichia coli BL21 0.37 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a 0.50 ECD_02483 UPF0124 family protein low > 61
Escherichia coli ECOR38 0.37 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.51 HEPCGN_20380 yfiH purine nucleoside phosphorylase YfiH low > 87
Escherichia coli ECRC62 0.37 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.50 BNILDI_11735 yfiH purine nucleoside phosphorylase YfiH low > 75
Escherichia coli BW25113 0.37 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) 0.51 b2593 yfiH hypothetical protein (NCBI) low > 76
Escherichia coli ECRC98 0.37 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.50 JDDGAC_24920 yfiH purine nucleoside phosphorylase YfiH low > 86
Escherichia coli ECRC102 0.37 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.50 NIAGMN_19025 yfiH purine nucleoside phosphorylase YfiH — —
Escherichia coli ECRC100 0.37 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.50 OKFHMN_21255 yfiH purine nucleoside phosphorylase YfiH low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC 0.50 OHPLBJKB_01113 Polyphenol oxidase low > 73
Escherichia coli Nissle 1917 0.37 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase 0.51 ECOLIN_RS14670 purine nucleoside phosphorylase YfiH — —
Escherichia coli ECRC101 0.37 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.50 MCAODC_11785 yfiH purine nucleoside phosphorylase YfiH low > 87
Escherichia fergusonii Becca 0.37 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC 0.51 EFB2_01297 Polyphenol oxidase low > 86
Dickeya dadantii 3937 0.37 DDA3937_RS09420 serine hydrolase 0.50 DDA3937_RS16105 polyphenol oxidase low > 74
Acinetobacter radioresistens SK82 0.37 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA 0.30 MPMX26_00736 Polyphenol oxidase low > 36
Dickeya dianthicola ME23 0.37 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase 0.50 DZA65_RS17325 polyphenol oxidase low > 75
Pectobacterium carotovorum WPP14 0.36 HER17_RS12545 serine hydrolase 0.48 HER17_RS05405 polyphenol oxidase low > 75
Enterobacter asburiae PDN3 0.36 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase 0.47 EX28DRAFT_2694 YfiH family protein low > 76
Klebsiella michiganensis M5al 0.36 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase 0.49 BWI76_RS21445 hypothetical protein low > 92
Pantoea sp. MT58 0.36 IAI47_07170 serine-type D-Ala-D-Ala carboxypeptidase DacD 0.45 IAI47_04430 polyphenol oxidase low > 76
Enterobacter sp. TBS_079 0.36 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC 0.48 MPMX20_03462 Polyphenol oxidase 0.15 45
Shewanella amazonensis SB2B 0.36 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.41 Sama_2604 hypothetical protein (RefSeq) — —
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.42 Xcc-8004.1363.1 COG1496: Uncharacterized conserved protein — —
Erwinia tracheiphila SCR3 0.36 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.47 LU632_RS16940 pgeF polyphenol oxidase low > 74
Shewanella sp. ANA-3 0.35 Shewana3_0991 penicillin-binding protein 6 (RefSeq) 0.46 Shewana3_3170 hypothetical protein (RefSeq) low > 73
Rhodospirillum rubrum S1H 0.35 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) 0.24 Rru_A0643 Protein of unknown function DUF152 (NCBI) — —
Shewanella oneidensis MR-1 0.35 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) 0.45 SO3578 conserved hypothetical protein TIGR00726 (NCBI ptt file) — —
Serratia liquefaciens MT49 0.35 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA 0.45 IAI46_03990 polyphenol oxidase low > 86
Azospirillum brasilense Sp245 0.35 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase 0.20 AZOBR_RS31175 polyphenol oxidase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.49 GFF4183 COG1496: Uncharacterized conserved protein low > 78
Azospirillum sp. SherDot2 0.34 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC 0.23 MPMX19_01826 Polyphenol oxidase — —
Bosea sp. OAE506 0.31 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein 0.22 ABIE41_RS11450 peptidoglycan editing factor PgeF — —
Magnetospirillum magneticum AMB-1 0.30 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase 0.22 AMB_RS03060 peptidoglycan editing factor PgeF low > 64
Rhodopseudomonas palustris CGA009 0.29 TX73_014370 D-alanyl-D-alanine carboxypeptidase 0.26 TX73_022600 peptidoglycan editing factor PgeF low > 86
Phaeobacter inhibens DSM 17395 0.29 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC 0.25 PGA1_c24750 uncharacterized protein, YfiH family — —
Sinorhizobium meliloti 1021 0.25 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein 0.29 SMc02683 hypothetical protein — —
Dinoroseobacter shibae DFL-12 0.25 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.24 Dshi_2651 protein of unknown function DUF152 (RefSeq) — —
Rhizobium sp. OAE497 0.24 ABIE40_RS09505 D-alanyl-D-alanine carboxypeptidase family protein 0.27 ABIE40_RS13030 peptidoglycan editing factor PgeF low > 107
Agrobacterium fabrum C58 0.24 Atu1499 penicillin binding protein 0.24 Atu2215 hypothetical protein low > 89

Not shown: 1 genomes with orthologs for HSERO_RS21530 only; 12 genomes with orthologs for HSERO_RS15065 only