Conservation of cofitness between HSERO_RS15630 and HSERO_RS09415 in Herbaspirillum seropedicae SmR1

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS15630 exodeoxyribonuclease III 1.0 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C 0.50 15
Cupriavidus basilensis FW507-4G11 0.67 RR42_RS07325 exodeoxyribonuclease III 0.58 RR42_RS14155 pseudouridine synthase low > 128
Burkholderia phytofirmans PsJN 0.65 BPHYT_RS12925 exodeoxyribonuclease III 0.59 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C low > 109
Paraburkholderia graminis OAS925 0.65 ABIE53_002802 exodeoxyribonuclease-3 0.60 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase low > 113
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS13495 exodeoxyribonuclease III 0.60 ABZR87_RS10090 RluA family pseudouridine synthase low > 80
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_00456 Exodeoxyribonuclease III 0.60 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase low > 103
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS05680 exodeoxyribonuclease III 0.59 QEN71_RS04500 RluA family pseudouridine synthase low > 153
Dechlorosoma suillum PS 0.64 Dsui_0044 exodeoxyribonuclease III 0.52 Dsui_2437 pseudouridine synthase, RluA family low > 51
Ralstonia solanacearum UW163 0.63 UW163_RS15010 exodeoxyribonuclease III 0.59 UW163_RS11840 RluA family pseudouridine synthase — —
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS01700 exodeoxyribonuclease III 0.59 RALBFv3_RS14375 RluA family pseudouridine synthase low > 76
Ralstonia solanacearum PSI07 0.63 RPSI07_RS15785 exodeoxyribonuclease III 0.59 RPSI07_RS19085 RluA family pseudouridine synthase low > 81
Ralstonia solanacearum GMI1000 0.63 RS_RS08025 exodeoxyribonuclease III 0.59 RS_RS05155 RluA family pseudouridine synthase low > 80
Castellaniella sp019104865 MT123 0.62 ABCV34_RS03115 exodeoxyribonuclease III 0.47 ABCV34_RS08415 RluA family pseudouridine synthase low > 48
Variovorax sp. SCN45 0.61 GFF3064 Exodeoxyribonuclease III (EC 3.1.11.2) 0.49 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) low > 127
Variovorax sp. OAS795 0.61 ABID97_RS09955 exodeoxyribonuclease III 0.47 ABID97_RS08250 RluA family pseudouridine synthase 0.72 3
Acidovorax sp. GW101-3H11 0.60 Ac3H11_4433 Exodeoxyribonuclease III (EC 3.1.11.2) 0.49 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF5268 Exodeoxyribonuclease III (EC 3.1.11.2) 0.47 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.55 64
Dyella japonica UNC79MFTsu3.2 0.56 ABZR86_RS14930 exodeoxyribonuclease III 0.32 ABZR86_RS02725 RluA family pseudouridine synthase low > 74
Lysobacter sp. OAE881 0.55 ABIE51_RS01755 exodeoxyribonuclease III 0.35 ABIE51_RS11800 RluA family pseudouridine synthase low > 62
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_15390 xth exodeoxyribonuclease III 0.37 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase low > 52
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.5140.1 Exodeoxyribonuclease III (EC 3.1.11.2) 0.34 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 74
Rhodanobacter denitrificans MT42 0.52 LRK55_RS08390 exodeoxyribonuclease III 0.38 LRK55_RS17750 RluA family pseudouridine synthase low > 63
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS08625 exodeoxyribonuclease III 0.38 LRK54_RS17895 RluA family pseudouridine synthase low > 59
Rhizobium sp. OAE497 0.44 ABIE40_RS08420 exodeoxyribonuclease III 0.23 ABIE40_RS09915 RluA family pseudouridine synthase low > 107
Azospirillum sp. SherDot2 0.42 MPMX19_04331 Exodeoxyribonuclease 0.21 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C low > 112
Azospirillum brasilense Sp245 0.41 AZOBR_RS15540 exodeoxyribonuclease III 0.21 AZOBR_RS06905 pseudouridine synthase low > 97
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_02090 exodeoxyribonuclease III 0.19 CCNA_02059 ribosomal large subunit pseudouridine synthase C — —
Caulobacter crescentus NA1000 0.41 CCNA_02090 exodeoxyribonuclease III 0.19 CCNA_02059 ribosomal large subunit pseudouridine synthase C 0.50 17
Sinorhizobium meliloti 1021 0.40 SMc02077 exodeoxyribonuclease III protein 0.22 SMc01275 ribosomal large subunit pseudouridine synthase C protein low > 103
Brevundimonas sp. GW460-12-10-14-LB2 0.39 A4249_RS02655 exodeoxyribonuclease III 0.18 A4249_RS07865 RluA family pseudouridine synthase low > 48
Agrobacterium fabrum C58 0.38 Atu5048 exodeoxyribonuclease III 0.22 Atu1471 ribosomal large subunit pseudouridine synthase C — —
Pseudomonas stutzeri RCH2 0.37 Psest_1187 exodeoxyribonuclease III 0.41 Psest_1680 pseudouridine synthase, RluA family — —
Dinoroseobacter shibae DFL-12 0.36 Dshi_1886 exodeoxyribonuclease III Xth (RefSeq) 0.18 Dshi_0315 pseudouridine synthase, RluA family (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.36 Rru_A1784 exodeoxyribonuclease III xth (NCBI) 0.19 Rru_A2659 Pseudouridine synthase, RluD (NCBI) — —
Pseudomonas sp. RS175 0.35 PFR28_01207 Exodeoxyribonuclease III 0.42 PFR28_03018 Ribosomal large subunit pseudouridine synthase C low > 88
Phaeobacter inhibens DSM 17395 0.35 PGA1_c11070 exodeoxyribonuclease III 0.22 PGA1_c01950 ribosomal large subunit pseudouridine synthase C — —
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_01850 exodeoxyribonuclease III 0.42 AO356_20125 23S rRNA pseudouridylate synthase low > 104
Pseudomonas fluorescens GW456-L13 0.34 PfGW456L13_3967 Exodeoxyribonuclease III (EC 3.1.11.2) 0.41 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N2E2 0.34 Pf6N2E2_2237 Exodeoxyribonuclease III (EC 3.1.11.2) 0.42 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 103
Pseudomonas putida KT2440 0.34 PP_2707 putative Exodeoxyribonuclease III 0.40 PP_1906 ribosomal large subunit pseudouridine synthase C low > 96
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_38 Exodeoxyribonuclease III (EC 3.1.11.2) 0.41 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Pseudomonas sp. S08-1 0.33 OH686_23775 exodeoxyribonuclease III 0.41 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase low > 80
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_3499 exodeoxyribonuclease III 0.18 Ga0059261_1033 pseudouridine synthase, RluA family — —
Vibrio cholerae E7946 ATCC 55056 0.31 CSW01_09315 exodeoxyribonuclease III 0.39 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 62
Shewanella loihica PV-4 0.31 Shew_2262 exonuclease III (RefSeq) 0.43 Shew_1594 RluA family pseudouridine synthase (RefSeq) — —
Enterobacter sp. TBS_079 0.30 MPMX20_01864 Exodeoxyribonuclease III 0.42 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C low > 85
Pectobacterium carotovorum WPP14 0.30 HER17_RS11085 exodeoxyribonuclease III 0.42 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Klebsiella michiganensis M5al 0.29 BWI76_RS11665 exodeoxyribonuclease III 0.43 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase low > 92
Kangiella aquimarina DSM 16071 0.29 B158DRAFT_1291 exodeoxyribonuclease III 0.42 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) low > 40
Rahnella sp. WP5 0.29 EX31_RS06330 exodeoxyribonuclease III 0.44 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 89
Serratia liquefaciens MT49 0.29 IAI46_14290 exodeoxyribonuclease III 0.42 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Escherichia coli ECOR38 0.29 HEPCGN_05265 xthA exodeoxyribonuclease III 0.42 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia coli BL21 0.29 ECD_01718 exonuclease III 0.42 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase — —
Escherichia coli ECRC99 0.29 KEDOAH_01210 xthA exodeoxyribonuclease III 0.42 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.29 OHPLBJKB_01983 Exodeoxyribonuclease III 0.42 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C low > 73
Dickeya dadantii 3937 0.29 DDA3937_RS10310 exodeoxyribonuclease III 0.41 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Escherichia coli ECOR27 0.29 NOLOHH_17415 xthA exodeoxyribonuclease III 0.42 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli ECRC102 0.29 NIAGMN_01165 xthA exodeoxyribonuclease III 0.42 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF3490 Exodeoxyribonuclease III (EC 3.1.11.2) 0.42 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 78
Escherichia coli ECRC101 0.29 MCAODC_18510 xthA exodeoxyribonuclease III 0.42 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia coli ECRC62 0.29 BNILDI_16200 xthA exodeoxyribonuclease III 0.42 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli ECRC100 0.29 OKFHMN_26900 xthA exodeoxyribonuclease III 0.42 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 80
Escherichia coli ECRC98 0.29 JDDGAC_01475 xthA exodeoxyribonuclease III 0.42 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.69 17
Escherichia coli BW25113 0.29 b1749 xthA exonuclease III (NCBI) 0.42 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) low > 76
Escherichia fergusonii Becca 0.29 EFB2_02244 Exodeoxyribonuclease III 0.42 EFB2_02889 Ribosomal large subunit pseudouridine synthase C low > 86
Dickeya dianthicola ME23 0.29 DZA65_RS10795 exodeoxyribonuclease III 0.41 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Enterobacter asburiae PDN3 0.29 EX28DRAFT_1753 exodeoxyribonuclease III 0.42 EX28DRAFT_1844 pseudouridine synthase, RluA family low > 76
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS18930 exodeoxyribonuclease III 0.42 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Pseudomonas fluorescens SBW25 0.29 PFLU_RS18930 exodeoxyribonuclease III 0.42 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Escherichia coli Nissle 1917 0.28 ECOLIN_RS09750 exodeoxyribonuclease III 0.42 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 55
Shewanella sp. ANA-3 0.28 Shewana3_1503 exonuclease III (RefSeq) 0.44 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) low > 73
Dickeya dianthicola 67-19 0.28 HGI48_RS10320 exodeoxyribonuclease III 0.41 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 71
Pseudomonas simiae WCS417 0.28 PS417_16980 exonuclease III 0.42 PS417_21480 23S rRNA pseudouridylate synthase low > 88
Pantoea sp. MT58 0.28 IAI47_08990 exodeoxyribonuclease III 0.41 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 76
Marinobacter adhaerens HP15 0.28 HP15_1776 exonuclease III 0.42 HP15_2221 pseudouridine synthase, RluA family low > 73
Erwinia tracheiphila SCR3 0.28 LU632_RS12950 xthA exodeoxyribonuclease III 0.43 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_27875 exonuclease III 0.42 AO353_01405 23S rRNA pseudouridylate synthase low > 101
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_2476 Exodeoxyribonuclease III 0.42 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_2476 Exodeoxyribonuclease III 0.42 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Shewanella amazonensis SB2B 0.26 Sama_2139 exodeoxyribonuclease III (RefSeq) 0.46 Sama_1988 pseudouridylate synthase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.25 MIT1002_01652 Exodeoxyribonuclease III 0.42 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C low > 70

Not shown: 8 genomes with orthologs for HSERO_RS15630 only; 1 genomes with orthologs for HSERO_RS09415 only