| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS04220 | | epoxyqueuosine reductase | 1.0 | HSERO_RS00910 | | peptidase | 0.29 | 20 |
| Paraburkholderia sabiae LMG 24235 | 0.65 | QEN71_RS02745 | | tRNA epoxyqueuosine(34) reductase QueG | 0.76 | QEN71_RS00335 | | ATP-dependent protease subunit HslV | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.64 | ABIE53_003363 | | epoxyqueuosine reductase | 0.77 | ABIE53_000422 | | ATP-dependent HslUV protease subunit HslV | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.63 | BPHYT_RS15960 | | iron-sulfur cluster binding protein | 0.77 | BPHYT_RS01635 | | ATP-dependent protease subunit HslV | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.63 | RR42_RS03405 | | epoxyqueuosine reductase | 0.83 | RR42_RS01060 | | peptidase | low | > 128 |
| Ralstonia solanacearum GMI1000 | 0.63 | RS_RS12740 | | tRNA epoxyqueuosine(34) reductase QueG | 0.76 | RS_RS00215 | | HslU--HslV peptidase proteolytic subunit | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.63 | RPSI07_RS12175 | | tRNA epoxyqueuosine(34) reductase QueG | 0.77 | RPSI07_RS23735 | | ATP-dependent protease subunit HslV | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.63 | ABZR87_RS00775 | | tRNA epoxyqueuosine(34) reductase QueG | 0.77 | ABZR87_RS05115 | | ATP-dependent protease subunit HslV | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.62 | H281DRAFT_04128 | | epoxyqueuosine reductase | 0.77 | H281DRAFT_02206 | | HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B | low | > 103 |
| Ralstonia solanacearum IBSBF1503 | 0.62 | RALBFv3_RS05120 | | tRNA epoxyqueuosine(34) reductase QueG | 0.77 | RALBFv3_RS09630 | | ATP-dependent protease subunit HslV | low | > 76 |
| Ralstonia solanacearum UW163 | 0.62 | UW163_RS08505 | | tRNA epoxyqueuosine(34) reductase QueG | 0.77 | UW163_RS03950 | | ATP-dependent protease subunit HslV | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.61 | GFF5474 | | Epoxyqueuosine (oQ) reductase QueG | 0.70 | GFF552 | | ATP-dependent protease HslV (EC 3.4.25.-) | low | > 90 |
| Acidovorax sp. GW101-3H11 | 0.60 | Ac3H11_306 | | Epoxyqueuosine (oQ) reductase QueG | 0.78 | Ac3H11_2004 | | ATP-dependent protease HslV (EC 3.4.25.-) | low | > 79 |
| Variovorax sp. OAS795 | 0.59 | ABID97_RS20285 | | tRNA epoxyqueuosine(34) reductase QueG | 0.79 | ABID97_RS06180 | | ATP-dependent protease subunit HslV | low | > 91 |
| Pseudomonas sp. S08-1 | 0.59 | OH686_09500 | | epoxyqueuosine reductase | 0.61 | OH686_10095 | | ATP-dependent protease HslVU, peptidase subunit | low | > 80 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.59 | Psyr_0566 | | 4Fe-4S cluster binding protein | 0.61 | Psyr_0395 | | HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.59 | Psyr_0566 | | 4Fe-4S cluster binding protein | 0.61 | Psyr_0395 | | HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.58 | ABZR86_RS00835 | | tRNA epoxyqueuosine(34) reductase QueG | 0.68 | ABZR86_RS15035 | | ATP-dependent protease subunit HslV | 0.46 | 31 |
| Castellaniella sp019104865 MT123 | 0.58 | ABCV34_RS13905 | | tRNA epoxyqueuosine(34) reductase QueG | 0.79 | ABCV34_RS13415 | | ATP-dependent protease subunit HslV | low | > 48 |
| Pseudomonas fluorescens FW300-N1B4 | 0.57 | Pf1N1B4_1418 | | Epoxyqueuosine (oQ) reductase QueG | 0.64 | Pf1N1B4_1552 | | ATP-dependent protease HslV (EC 3.4.25.-) | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.57 | PFLU_RS02540 | | tRNA epoxyqueuosine(34) reductase QueG | 0.65 | PFLU_RS01965 | | ATP-dependent protease subunit HslV | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.57 | AO353_13115 | | epoxyqueuosine reductase | 0.65 | AO353_12430 | | ATP-dependent protease subunit HslV | — | — |
| Pseudomonas fluorescens SBW25 | 0.57 | PFLU_RS02540 | | tRNA epoxyqueuosine(34) reductase QueG | 0.65 | PFLU_RS01965 | | ATP-dependent protease subunit HslV | low | > 109 |
| Pseudomonas sp. RS175 | 0.57 | PFR28_05115 | | Epoxyqueuosine reductase | 0.59 | PFR28_04999 | | ATP-dependent protease subunit HslV | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.57 | PfGW456L13_160 | | Epoxyqueuosine (oQ) reductase QueG | 0.58 | PfGW456L13_289 | | ATP-dependent protease HslV (EC 3.4.25.-) | — | — |
| Pseudomonas simiae WCS417 | 0.57 | PS417_02460 | | epoxyqueuosine reductase | 0.65 | PS417_01920 | | ATP-dependent protease subunit HslV | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.57 | AO356_08685 | | epoxyqueuosine reductase | 0.58 | AO356_09455 | | ATP-dependent protease subunit HslV | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.56 | Pf6N2E2_3620 | | Epoxyqueuosine (oQ) reductase QueG | 0.58 | Pf6N2E2_3769 | | ATP-dependent protease HslV (EC 3.4.25.-) | — | — |
| Rhodanobacter sp. FW510-T8 | 0.55 | OKGIIK_03900 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.64 | OKGIIK_15320 | hslV | ATP-dependent protease subunit HslV | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.55 | LRK54_RS15130 | | tRNA epoxyqueuosine(34) reductase QueG | 0.65 | LRK54_RS08525 | | ATP-dependent protease subunit HslV | — | — |
| Serratia liquefaciens MT49 | 0.55 | IAI46_01595 | | tRNA epoxyqueuosine(34) reductase QueG | 0.69 | IAI46_24570 | | ATP-dependent protease subunit HslV | low | > 86 |
| Escherichia coli ECRC99 | 0.55 | KEDOAH_15870 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.66 | KEDOAH_14425 | hslV | ATP-dependent protease subunit HslV | — | — |
| Escherichia coli ECRC100 | 0.55 | OKFHMN_12285 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.66 | OKFHMN_13735 | hslV | ATP-dependent protease subunit HslV | low | > 80 |
| Variovorax sp. SCN45 | 0.55 | GFF4805 | | Epoxyqueuosine reductase (EC 1.17.99.6) QueG | 0.81 | GFF4484 | | ATP-dependent protease subunit HslV (EC 3.4.25.2) | low | > 127 |
| Pseudomonas stutzeri RCH2 | 0.55 | Psest_0677 | | iron-sulfur cluster binding protein, putative | 0.59 | Psest_3936 | | ATP-dependent protease HslVU, peptidase subunit | low | > 67 |
| Escherichia coli ECRC102 | 0.55 | NIAGMN_10135 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.66 | NIAGMN_11490 | hslV | ATP-dependent protease subunit HslV | — | — |
| Escherichia coli ECOR38 | 0.55 | HEPCGN_10515 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.66 | HEPCGN_12380 | hslV | ATP-dependent protease subunit HslV | low | > 87 |
| Escherichia coli ECRC98 | 0.55 | JDDGAC_15925 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.66 | JDDGAC_17360 | hslV | ATP-dependent protease subunit HslV | 0.68 | 3 |
| Rhodanobacter denitrificans MT42 | 0.55 | LRK55_RS14845 | | tRNA epoxyqueuosine(34) reductase QueG | 0.65 | LRK55_RS08290 | | ATP-dependent protease subunit HslV | — | — |
| Escherichia coli ECOR27 | 0.55 | NOLOHH_04550 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.66 | NOLOHH_05880 | hslV | ATP-dependent protease subunit HslV | low | > 75 |
| Escherichia coli ECRC101 | 0.55 | MCAODC_02800 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.66 | MCAODC_04235 | hslV | ATP-dependent protease subunit HslV | low | > 87 |
| Escherichia coli ECRC62 | 0.55 | BNILDI_06940 | queG | tRNA epoxyqueuosine(34) reductase QueG | 0.66 | BNILDI_05650 | hslV | ATP-dependent protease subunit HslV | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_03876 | | Epoxyqueuosine reductase | 0.66 | OHPLBJKB_04119 | | ATP-dependent protease subunit HslV | low | > 73 |
| Escherichia coli BL21 | 0.55 | ECD_04033 | | epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis | 0.66 | ECD_03817 | | peptidase component of the HslUV protease | low | > 61 |
| Escherichia coli BW25113 | 0.55 | b4166 | yjeS | predicted Fe-S electron transport protein (NCBI) | 0.66 | b3932 | hslV | ATP-dependent protease peptidase subunit (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS24200 | | tRNA epoxyqueuosine(34) reductase QueG | 0.66 | ECOLIN_RS22640 | | ATP-dependent protease subunit HslV | low | > 55 |
| Escherichia fergusonii Becca | 0.55 | EFB2_04369 | | Epoxyqueuosine reductase | 0.66 | EFB2_04686 | | ATP-dependent protease subunit HslV | low | > 86 |
| Dickeya dianthicola ME23 | 0.55 | DZA65_RS19710 | | tRNA epoxyqueuosine(34) reductase QueG | 0.69 | DZA65_RS21500 | | ATP-dependent protease subunit HslV | low | > 75 |
| Pseudomonas putida KT2440 | 0.55 | PP_4900 | | epoxyqueuosine reductase | 0.61 | PP_5000 | | peptidase component of the ATP-dependent HslVU protease | low | > 96 |
| Dickeya dadantii 3937 | 0.55 | DDA3937_RS18645 | | tRNA epoxyqueuosine(34) reductase QueG | 0.69 | DDA3937_RS00920 | | ATP-dependent protease subunit HslV | low | > 74 |
| Dickeya dianthicola 67-19 | 0.55 | HGI48_RS18575 | | tRNA epoxyqueuosine(34) reductase QueG | 0.69 | HGI48_RS20455 | | ATP-dependent protease subunit HslV | low | > 71 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.54 | GFF819 | | Epoxyqueuosine (oQ) reductase QueG | 0.56 | GFF2314 | | ATP-dependent protease HslV (EC 3.4.25.-) | low | > 78 |
| Klebsiella michiganensis M5al | 0.54 | BWI76_RS02505 | | tRNA epoxyqueuosine(34) reductase QueG | 0.65 | BWI76_RS00755 | | ATP-dependent protease subunit HslV | low | > 92 |
| Marinobacter adhaerens HP15 | 0.54 | HP15_2505 | | iron-sulfur cluster binding protein | 0.70 | HP15_466 | | ATP-dependent protease peptidase subunit | low | > 73 |
| Pectobacterium carotovorum WPP14 | 0.54 | HER17_RS02555 | | tRNA epoxyqueuosine(34) reductase QueG | 0.68 | HER17_RS00855 | | ATP-dependent protease subunit HslV | low | > 75 |
| Shewanella oneidensis MR-1 | 0.54 | SO3861 | | iron-sulfur cluster-binding protein (NCBI ptt file) | 0.65 | SO4162 | hslV | ATP-dependent protease HslV (NCBI ptt file) | 0.36 | 31 |
| Enterobacter sp. TBS_079 | 0.53 | MPMX20_00447 | | Epoxyqueuosine reductase | 0.66 | MPMX20_04537 | | ATP-dependent protease subunit HslV | low | > 85 |
| Enterobacter asburiae PDN3 | 0.53 | EX28DRAFT_3363 | | epoxyqueuosine reductase | 0.66 | EX28DRAFT_4405 | | ATP-dependent protease HslVU, peptidase subunit | low | > 76 |
| Shewanella sp. ANA-3 | 0.53 | Shewana3_0745 | | putative iron-sulfur cluster binding protein (RefSeq) | 0.65 | Shewana3_3699 | | ATP-dependent protease peptidase subunit (RefSeq) | low | > 73 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS08045 | | tRNA epoxyqueuosine(34) reductase QueG | 0.56 | ABIE51_RS03040 | | ATP-dependent protease subunit HslV | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.53 | MIT1002_03794 | | Epoxyqueuosine reductase | 0.62 | MIT1002_03660 | | ATP-dependent protease subunit HslV | low | > 70 |
| Shewanella loihica PV-4 | 0.53 | Shew_2979 | | putative iron-sulfur cluster binding protein (RefSeq) | 0.69 | Shew_0375 | | ATP-dependent protease peptidase subunit (RefSeq) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.52 | CSW01_01810 | | tRNA epoxyqueuosine(34) reductase QueG | 0.66 | CSW01_13515 | | HslU--HslV peptidase proteolytic subunit | low | > 62 |
| Pantoea sp. MT58 | 0.52 | IAI47_02560 | | tRNA epoxyqueuosine(34) reductase QueG | 0.66 | IAI47_00850 | | ATP-dependent protease subunit HslV | low | > 76 |
| Rahnella sp. WP5 | 0.52 | EX31_RS08850 | | tRNA epoxyqueuosine(34) reductase QueG | 0.67 | EX31_RS14240 | | ATP-dependent protease subunit HslV | low | > 89 |
| Dechlorosoma suillum PS | 0.50 | Dsui_3502 | | iron-sulfur cluster binding protein, putative | 0.80 | Dsui_0581 | | ATP-dependent protease HslVU, peptidase subunit | low | > 51 |
| Shewanella amazonensis SB2B | 0.50 | Sama_2625 | | iron-sulfur cluster-binding protein (RefSeq) | 0.70 | Sama_0441 | | ATP-dependent protease peptidase subunit (RefSeq) | low | > 62 |
| Kangiella aquimarina DSM 16071 | 0.45 | B158DRAFT_0486 | | iron-sulfur cluster binding protein, putative | 0.70 | B158DRAFT_0748 | | ATP-dependent protease HslVU, peptidase subunit | low | > 40 |
| Rhizobium sp. OAE497 | 0.34 | ABIE40_RS01310 | | tRNA epoxyqueuosine(34) reductase QueG | 0.55 | ABIE40_RS19465 | | ATP-dependent protease subunit HslV | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.34 | SMc00406 | | 4Fe-4S ferredoxin | 0.61 | SMc02575 | | ATP-dependent protease peptidase subunit | 0.42 | 14 |
| Rhodospirillum rubrum S1H | 0.33 | Rru_A0279 | | 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) | 0.60 | Rru_A3599 | | 20S proteasome, A and B subunits (NCBI) | low | > 58 |
| Agrobacterium fabrum C58 | 0.32 | Atu0292 | | iron-sulfur cluster binding protein | 0.56 | Atu0044 | | heat shock protein hslV | low | > 89 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.32 | A4249_RS11375 | | tRNA epoxyqueuosine(34) reductase QueG | 0.61 | A4249_RS12390 | | ATP-dependent protease subunit HslV | low | > 48 |
| Caulobacter crescentus NA1000 | 0.32 | CCNA_03753 | | iron-sulfur cluster-binding protein | 0.56 | CCNA_03843 | | ATP-dependent endopeptidase hsl proteolytic subunit HslV | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.32 | CCNA_03753 | | iron-sulfur cluster-binding protein | 0.56 | CCNA_03843 | | ATP-dependent endopeptidase hsl proteolytic subunit HslV | low | > 67 |
| Rhodopseudomonas palustris CGA009 | 0.31 | TX73_000215 | | tRNA epoxyqueuosine(34) reductase QueG | 0.60 | TX73_001600 | | ATP-dependent protease subunit HslV | low | > 86 |
| Sphingomonas koreensis DSMZ 15582 | 0.31 | Ga0059261_1058 | | epoxyqueuosine reductase | 0.62 | Ga0059261_3341 | | ATP-dependent protease HslVU, peptidase subunit | low | > 68 |
| Phaeobacter inhibens DSM 17395 | 0.31 | PGA1_c34310 | | Uncharacterized Fe-S protein | 0.52 | PGA1_c35260 | | ATP-dependent protease HslV | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.30 | Dshi_3307 | | domain of unknown function DUF1730 (RefSeq) | 0.53 | Dshi_3440 | | 20S proteasome A and B subunits (RefSeq) | low | > 64 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.30 | Echvi_0824 | | iron-sulfur cluster binding protein, putative | 0.56 | Echvi_3885 | | ATP-dependent protease HslVU, peptidase subunit | low | > 79 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.30 | CA264_19810 | | epoxyqueuosine reductase | 0.50 | CA264_04815 | | ATP-dependent protease subunit HslV | low | > 74 |
| Magnetospirillum magneticum AMB-1 | 0.30 | AMB_RS03995 | | tRNA epoxyqueuosine(34) reductase QueG | 0.57 | AMB_RS22950 | | HslU--HslV peptidase proteolytic subunit | low | > 64 |
Not shown: 7 genomes with orthologs for HSERO_RS04220 only; 6 genomes with orthologs for HSERO_RS00910 only