| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas simiae WCS417 | 1.0 | PS417_27585 | | diaminopimelate epimerase | 1.0 | PS417_04285 | | protease TldD | 0.32 | 14 |
| Pseudomonas fluorescens SBW25-INTG | 0.93 | PFLU_RS29270 | | diaminopimelate epimerase | 1.00 | PFLU_RS04340 | | metalloprotease TldD | — | — |
| Pseudomonas fluorescens SBW25 | 0.93 | PFLU_RS29270 | | diaminopimelate epimerase | 1.00 | PFLU_RS04340 | | metalloprotease TldD | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.90 | PfGW456L13_844 | | Diaminopimelate epimerase (EC 5.1.1.7) | 0.92 | PfGW456L13_5026 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.90 | Pf1N1B4_2173 | | Diaminopimelate epimerase (EC 5.1.1.7) | 0.92 | Pf1N1B4_1092 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.90 | AO353_09040 | | diaminopimelate epimerase | 0.92 | AO353_05215 | | protease TldD | low | > 101 |
| Pseudomonas fluorescens FW300-N2E2 | 0.89 | Pf6N2E2_4418 | | Diaminopimelate epimerase (EC 5.1.1.7) | 0.92 | Pf6N2E2_3280 | | TldD protein, part of TldE/TldD proteolytic complex | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.89 | AO356_12735 | | diaminopimelate epimerase | 0.92 | AO356_07095 | | protease TldD | low | > 104 |
| Pseudomonas sp. RS175 | 0.88 | PFR28_04376 | | Diaminopimelate epimerase | 0.90 | PFR28_00161 | | Metalloprotease TldD | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.87 | Psyr_0183 | | diaminopimelate epimerase | 0.91 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.87 | Psyr_0183 | | diaminopimelate epimerase | 0.91 | Psyr_4156 | | microcin-processing peptidase 2, Unknown type peptidase, MEROPS family U62 | — | — |
| Pseudomonas stutzeri RCH2 | 0.81 | Psest_3765 | | diaminopimelate epimerase | 0.80 | Psest_3320 | | Predicted Zn-dependent proteases and their inactivated homologs | — | — |
| Pseudomonas sp. S08-1 | 0.81 | OH686_13795 | | diaminopimelate epimerase | 0.82 | OH686_08580 | | TldD protein, part of TldE/TldD proteolytic complex | — | — |
| Pseudomonas putida KT2440 | 0.81 | PP_5228 | | diaminopimelate epimerase | 0.88 | PP_0940 | | putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.59 | CSW01_00640 | | diaminopimelate epimerase | 0.62 | CSW01_02220 | | metalloprotease TldD | — | — |
| Dechlorosoma suillum PS | 0.59 | Dsui_0649 | | diaminopimelate epimerase | 0.58 | Dsui_3401 | | putative Zn-dependent protease-like protein | — | — |
| Dickeya dianthicola 67-19 | 0.58 | HGI48_RS20055 | | diaminopimelate epimerase | 0.65 | HGI48_RS01380 | | metalloprotease TldD | — | — |
| Dickeya dianthicola ME23 | 0.58 | DZA65_RS21100 | | diaminopimelate epimerase | 0.65 | DZA65_RS01440 | | metalloprotease TldD | — | — |
| Rahnella sp. WP5 | 0.58 | EX31_RS15155 | | diaminopimelate epimerase | 0.63 | EX31_RS12265 | | metalloprotease TldD | low | > 89 |
| Enterobacter asburiae PDN3 | 0.58 | EX28DRAFT_4478 | | diaminopimelate epimerase (EC 5.1.1.7) | 0.63 | EX28DRAFT_3295 | | Predicted Zn-dependent proteases and their inactivated homologs | low | > 76 |
| Escherichia coli ECRC101 | 0.58 | MCAODC_04935 | dapF | diaminopimelate epimerase | 0.64 | MCAODC_08275 | tldD | metalloprotease TldD | — | — |
| Escherichia coli ECRC98 | 0.58 | JDDGAC_18055 | dapF | diaminopimelate epimerase | 0.64 | JDDGAC_21380 | tldD | metalloprotease TldD | — | — |
| Escherichia fergusonii Becca | 0.58 | EFB2_04828 | | Diaminopimelate epimerase | 0.64 | EFB2_00586 | | Metalloprotease TldD | — | — |
| Escherichia coli BW25113 | 0.58 | b3809 | dapF | diaminopimelate epimerase (VIMSS) | 0.64 | b3244 | tldD | predicted peptidase (NCBI) | — | — |
| Escherichia coli ECRC102 | 0.58 | NIAGMN_12185 | dapF | diaminopimelate epimerase | 0.64 | NIAGMN_15515 | tldD | metalloprotease TldD | — | — |
| Escherichia coli ECOR38 | 0.58 | HEPCGN_13135 | dapF | diaminopimelate epimerase | 0.64 | HEPCGN_16620 | tldD | metalloprotease TldD | — | — |
| Pectobacterium carotovorum WPP14 | 0.58 | HER17_RS01340 | | diaminopimelate epimerase | 0.63 | HER17_RS20140 | | metalloprotease TldD | — | — |
| Escherichia coli ECRC62 | 0.58 | BNILDI_04975 | dapF | diaminopimelate epimerase | 0.64 | BNILDI_01980 | tldD | metalloprotease TldD | — | — |
| Escherichia coli ECOR27 | 0.58 | NOLOHH_06560 | dapF | diaminopimelate epimerase | 0.64 | NOLOHH_09555 | tldD | metalloprotease TldD | — | — |
| Escherichia coli ECRC99 | 0.58 | KEDOAH_13720 | dapF | diaminopimelate epimerase | 0.64 | KEDOAH_10395 | tldD | metalloprotease TldD | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.58 | OHPLBJKB_04241 | | Diaminopimelate epimerase | 0.64 | OHPLBJKB_00460 | | Metalloprotease TldD | — | — |
| Escherichia coli ECRC101 | 0.58 | OKFHMN_14430 | dapF | diaminopimelate epimerase | 0.64 | OKFHMN_17755 | tldD | metalloprotease TldD | — | — |
| Escherichia coli BL21 | 0.58 | ECD_03685 | | diaminopimelate epimerase | 0.64 | ECD_03104 | | putative peptidase | low | > 60 |
| Herbaspirillum seropedicae SmR1 | 0.57 | HSERO_RS21455 | | diaminopimelate epimerase | 0.58 | HSERO_RS07155 | | peptidase C69 | — | — |
| Escherichia coli Nissle 1917 | 0.57 | ECOLIN_RS21865 | | diaminopimelate epimerase | 0.64 | ECOLIN_RS18595 | | metalloprotease TldD | — | — |
| Enterobacter sp. TBS_079 | 0.57 | MPMX20_04467 | | Diaminopimelate epimerase | 0.64 | MPMX20_04151 | | Metalloprotease TldD | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.57 | GFF237 | | Diaminopimelate epimerase (EC 5.1.1.7) | 0.64 | GFF2140 | | TldD protein, part of TldE/TldD proteolytic complex | — | — |
| Dickeya dadantii 3937 | 0.57 | DDA3937_RS19900 | | diaminopimelate epimerase | 0.65 | DDA3937_RS01460 | | metalloprotease TldD | — | — |
| Serratia liquefaciens MT49 | 0.57 | IAI46_00715 | | diaminopimelate epimerase | 0.66 | IAI46_22685 | | metalloprotease TldD | — | — |
| Shewanella oneidensis MR-1 | 0.56 | SO4308 | dapF | diaminopimelate epimerase (NCBI ptt file) | 0.62 | SO4091 | tldD | tldD protein (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.56 | Shewana3_0391 | dapF | diaminopimelate epimerase (RefSeq) | 0.65 | Shewana3_3641 | | microcin-processing peptidase 2 (RefSeq) | — | — |
| Pantoea sp. MT58 | 0.56 | IAI47_18410 | | diaminopimelate epimerase | 0.66 | IAI47_02465 | | metalloprotease TldD | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.56 | LU632_RS24145 | dapF | diaminopimelate epimerase | 0.63 | LU632_RS21420 | tldD | metalloprotease TldD | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.56 | RR42_RS01250 | | diaminopimelate epimerase | 0.62 | RR42_RS05875 | | protease TldD | — | — |
| Alteromonas macleodii MIT1002 | 0.56 | MIT1002_00159 | | Diaminopimelate epimerase | 0.63 | MIT1002_00227 | | protease TldD | — | — |
| Shewanella loihica PV-4 | 0.55 | Shew_0323 | dapF | diaminopimelate epimerase (RefSeq) | 0.64 | Shew_0410 | | peptidase U62, modulator of DNA gyrase (RefSeq) | — | — |
| Klebsiella michiganensis M5al | 0.54 | BWI76_RS01200 | | diaminopimelate epimerase | 0.64 | BWI76_RS25470 | | metalloprotease TldD | low | > 92 |
| Paraburkholderia sabiae LMG 24235 | 0.54 | QEN71_RS00365 | | diaminopimelate epimerase | 0.58 | QEN71_RS26555 | | metalloprotease TldD | — | — |
| Ralstonia solanacearum UW163 | 0.54 | UW163_RS03515 | | diaminopimelate epimerase | 0.61 | UW163_RS08170 | | metalloprotease TldD | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.54 | RALBFv3_RS10065 | | diaminopimelate epimerase | 0.61 | RALBFv3_RS05455 | | metalloprotease TldD | — | — |
| Ralstonia sp. UNC404CL21Col | 0.53 | ABZR87_RS05580 | | diaminopimelate epimerase | 0.61 | ABZR87_RS01105 | | metalloprotease TldD | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.53 | RPSI07_RS23305 | | diaminopimelate epimerase | 0.60 | RPSI07_RS11850 | | metalloprotease TldD | — | — |
| Shewanella amazonensis SB2B | 0.53 | Sama_3249 | dapF | diaminopimelate epimerase (RefSeq) | 0.61 | Sama_0474 | | TldD protein (RefSeq) | — | — |
| Kangiella aquimarina DSM 16071 | 0.53 | B158DRAFT_0246 | | diaminopimelate epimerase (EC 5.1.1.7) | 0.62 | B158DRAFT_2072 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | — | — |
| Burkholderia phytofirmans PsJN | 0.52 | BPHYT_RS01665 | | diaminopimelate epimerase | 0.59 | BPHYT_RS03540 | | peptidase C69 | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.52 | H281DRAFT_02200 | | diaminopimelate epimerase | 0.59 | H281DRAFT_04688 | | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | — | — |
| Paraburkholderia graminis OAS925 | 0.52 | ABIE53_000428 | | diaminopimelate epimerase | 0.59 | ABIE53_000851 | | TldD protein | — | — |
| Ralstonia solanacearum GMI1000 | 0.50 | RS_RS00675 | | diaminopimelate epimerase | 0.61 | RS_RS13315 | | metalloprotease TldD | — | — |
| Variovorax sp. OAS795 | 0.50 | ABID97_RS06135 | | diaminopimelate epimerase | 0.59 | ABID97_RS06335 | | metalloprotease TldD | — | — |
| Variovorax sp. SCN45 | 0.49 | GFF4493 | | Diaminopimelate epimerase (EC 5.1.1.7) | 0.58 | GFF4449 | | TldD protein, part of TldE/TldD proteolytic complex | — | — |
| Acidovorax sp. GW101-3H11 | 0.48 | Ac3H11_1993 | | Diaminopimelate epimerase (EC 5.1.1.7) | 0.59 | Ac3H11_4036 | | TldD protein, part of TldE/TldD proteolytic complex | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.47 | ABZR86_RS15015 | | diaminopimelate epimerase | 0.65 | ABZR86_RS21715 | | metalloprotease TldD | — | — |
| Castellaniella sp019104865 MT123 | 0.45 | ABCV34_RS13465 | | diaminopimelate epimerase | 0.58 | ABCV34_RS02590 | | metalloprotease TldD | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.44 | GFF545 | | Diaminopimelate epimerase (EC 5.1.1.7) | 0.58 | GFF580 | | TldD protein, part of TldE/TldD proteolytic complex | — | — |
| Rhodanobacter sp. FW510-T8 | 0.43 | OKGIIK_15335 | dapF | diaminopimelate epimerase | 0.64 | OKGIIK_10280 | tldD | metalloprotease TldD | — | — |
| Bacteroides stercoris CC31F | 0.41 | HMPREF1181_RS16035 | | diaminopimelate epimerase | 0.36 | HMPREF1181_RS03165 | | TldD/PmbA family protein | low | > 56 |
| Methanococcus maripaludis JJ | 0.41 | MMJJ_RS00375 | | diaminopimelate epimerase | 0.18 | MMJJ_RS06710 | | TldD/PmbA family protein | — | — |
| Methanococcus maripaludis S2 | 0.41 | MMP_RS04760 | | diaminopimelate epimerase | 0.18 | MMP_RS07650 | | TldD/PmbA family protein | — | — |
| Rhodanobacter denitrificans MT42 | 0.40 | LRK55_RS08310 | | diaminopimelate epimerase | 0.62 | LRK55_RS03145 | | metalloprotease TldD | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.40 | LRK54_RS08545 | | diaminopimelate epimerase | 0.62 | LRK54_RS03395 | | metalloprotease TldD | — | — |
| Synechococcus elongatus PCC 7942 | 0.39 | Synpcc7942_1927 | dapF | diaminopimelate epimerase | 0.23 | Synpcc7942_1127 | tldD | microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.39 | BT0548 | | diaminopimelate epimerase (NCBI ptt file) | 0.37 | BT3648 | | putative modulator of DNA gyrase (NCBI ptt file) | low | > 81 |
| Lysobacter sp. OAE881 | 0.37 | ABIE51_RS03025 | | diaminopimelate epimerase | 0.64 | ABIE51_RS06795 | | metalloprotease TldD | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.36 | Xcc-8004.845.1 | | Diaminopimelate epimerase (EC 5.1.1.7) | 0.63 | Xcc-8004.1883.1 | | TldD protein, part of TldE/TldD proteolytic complex | — | — |
| Parabacteroides merdae CL09T00C40 | 0.36 | HMPREF1078_RS01230 | | diaminopimelate epimerase | 0.35 | HMPREF1078_RS03620 | | TldD/PmbA family protein | low | > 61 |
| Rhodopseudomonas palustris CGA009 | 0.28 | TX73_001300 | | diaminopimelate epimerase | 0.51 | TX73_004255 | | metalloprotease TldD | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.15 | Ga0059261_2394 | | diaminopimelate epimerase (EC 5.1.1.7) | 0.52 | Ga0059261_2252 | | Predicted Zn-dependent proteases and their inactivated homologs | — | — |
Not shown: 13 genomes with orthologs for PS417_27585 only; 12 genomes with orthologs for PS417_04285 only