| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF2462 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 1.0 | GFF5172 | | 4-hydroxybenzoyl-CoA thioesterase family active site | 0.58 | 19 |
| Variovorax sp. SCN45 | 0.61 | GFF3255 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) | 0.64 | GFF574 | | Tol-Pal system-associated acyl-CoA thioesterase | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.56 | Ac3H11_4323 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.66 | Ac3H11_3136 | | 4-hydroxybenzoyl-CoA thioesterase family active site | low | > 79 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.45 | H281DRAFT_06311 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.47 | H281DRAFT_04723 | | (3S)-malyl-CoA thioesterase | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS27020 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.52 | QEN71_RS26245 | | tol-pal system-associated acyl-CoA thioesterase | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.43 | ABIE53_003540 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.47 | ABIE53_000886 | | acyl-CoA thioester hydrolase | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.41 | BPHYT_RS16855 | | 16S rRNA methyltransferase | 0.49 | BPHYT_RS03715 | | 4-hydroxybenzoyl-CoA thioesterase | low | > 109 |
| Cupriavidus basilensis FW507-4G11 | 0.41 | RR42_RS17590 | | 16S rRNA methyltransferase | 0.47 | RR42_RS15480 | | acyl-CoA thioesterase | low | > 128 |
| Ralstonia solanacearum PSI07 | 0.39 | RPSI07_RS11365 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.48 | RPSI07_RS20320 | | tol-pal system-associated acyl-CoA thioesterase | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.39 | RALBFv3_RS05880 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.49 | RALBFv3_RS12905 | | tol-pal system-associated acyl-CoA thioesterase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.39 | UW163_RS07745 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.49 | UW163_RS00660 | | tol-pal system-associated acyl-CoA thioesterase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.39 | ABZR87_RS01505 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.48 | ABZR87_RS08965 | | tol-pal system-associated acyl-CoA thioesterase | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.39 | RS_RS13825 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.49 | RS_RS03680 | | tol-pal system-associated acyl-CoA thioesterase | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.38 | HSERO_RS07110 | | 16S rRNA methyltransferase | 0.46 | HSERO_RS06130 | | 4-hydroxybenzoyl-CoA thioesterase | low | > 78 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.36 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.42 | Psyr_1411 | | 4-hydroxybenzoyl-CoA thioesterase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.36 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.42 | Psyr_1411 | | 4-hydroxybenzoyl-CoA thioesterase | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.36 | Pf1N1B4_2376 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.41 | Pf1N1B4_636 | | 4-hydroxybenzoyl-CoA thioesterase family active site | — | — |
| Marinobacter adhaerens HP15 | 0.36 | HP15_2926 | | ribosomal RNA small subunit methyltransferase E | 0.37 | HP15_2039 | | 4-hydroxybenzoyl-CoA thioesterase | low | > 73 |
| Pseudomonas fluorescens FW300-N2E3 | 0.35 | AO353_08050 | | 16S rRNA methyltransferase | 0.41 | AO353_03575 | | 4-hydroxybenzoyl-CoA thioesterase | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.35 | AO356_13565 | | 16S rRNA methyltransferase | 0.41 | AO356_18030 | | 4-hydroxybenzoyl-CoA thioesterase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.35 | Pf6N2E2_4630 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.42 | Pf6N2E2_5538 | | 4-hydroxybenzoyl-CoA thioesterase family active site | low | > 103 |
| Pseudomonas putida KT2440 | 0.35 | PP_4985 | | 16S rRNA m3U1498 methyltransferase | 0.40 | PP_1218 | | putative acyl-CoA thioesterase | low | > 96 |
| Pseudomonas stutzeri RCH2 | 0.35 | Psest_0305 | | RNA methyltransferase, RsmE family | 0.42 | Psest_1498 | | tol-pal system-associated acyl-CoA thioesterase | low | > 67 |
| Dechlorosoma suillum PS | 0.34 | Dsui_1568 | | RNA methyltransferase, RsmE family | 0.38 | Dsui_0483 | | tol-pal system-associated acyl-CoA thioesterase | — | — |
| Escherichia coli ECRC62 | 0.34 | BNILDI_09730 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | BNILDI_21255 | ybgC | tol-pal system-associated acyl-CoA thioesterase | — | — |
| Escherichia coli ECRC101 | 0.34 | OKFHMN_19280 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | OKFHMN_06825 | ybgC | tol-pal system-associated acyl-CoA thioesterase | — | — |
| Escherichia coli ECRC99 | 0.34 | KEDOAH_08860 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | KEDOAH_21140 | ybgC | tol-pal system-associated acyl-CoA thioesterase | — | — |
| Escherichia coli ECRC101 | 0.34 | MCAODC_09800 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | MCAODC_26045 | ybgC | tol-pal system-associated acyl-CoA thioesterase | — | — |
| Escherichia coli ECOR27 | 0.34 | NOLOHH_11150 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | NOLOHH_23260 | ybgC | tol-pal system-associated acyl-CoA thioesterase | low | > 57 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.34 | OHPLBJKB_00772 | | Ribosomal RNA small subunit methyltransferase E | 0.37 | OHPLBJKB_02977 | | Acyl-CoA thioester hydrolase YbgC | low | > 73 |
| Escherichia coli BL21 | 0.34 | ECD_02776 | | 16S rRNA m(3)U1498 methyltransferase, SAM-dependent | 0.37 | ECD_00696 | | acyl-CoA thioester hydrolase | low | > 60 |
| Escherichia coli ECOR38 | 0.34 | HEPCGN_18585 | | Ribosomal RNA small subunit methyltransferase E | 0.37 | HEPCGN_01445 | ybgC | tol-pal system-associated acyl-CoA thioesterase | low | > 85 |
| Escherichia coli ECRC102 | 0.34 | NIAGMN_17045 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | NIAGMN_04875 | ybgC | tol-pal system-associated acyl-CoA thioesterase | — | — |
| Escherichia coli BW25113 | 0.34 | b2946 | yggJ | orf, hypothetical protein (VIMSS) | 0.37 | b0736 | ybgC | predicted acyl-CoA thioesterase (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.34 | ECOLIN_RS16390 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | ECOLIN_RS03920 | | tol-pal system-associated acyl-CoA thioesterase | — | — |
| Escherichia coli ECRC98 | 0.34 | JDDGAC_22910 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.37 | JDDGAC_10480 | ybgC | tol-pal system-associated acyl-CoA thioesterase | — | — |
| Escherichia fergusonii Becca | 0.34 | EFB2_00956 | | Ribosomal RNA small subunit methyltransferase E | 0.37 | EFB2_03370 | | Acyl-CoA thioester hydrolase YbgC | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.33 | ABZR86_RS10230 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.38 | ABZR86_RS10825 | | tol-pal system-associated acyl-CoA thioesterase | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.33 | LU632_RS05485 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.34 | LU632_RS16050 | ybgC | tol-pal system-associated acyl-CoA thioesterase | low | > 74 |
| Pseudomonas sp. RS175 | 0.33 | PFR28_04209 | | Ribosomal RNA small subunit methyltransferase E | 0.41 | PFR28_03411 | | Acyl-CoA thioester hydrolase YbgC | 0.24 | 70 |
| Pseudomonas sp. S08-1 | 0.33 | OH686_10855 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.41 | OH686_19140 | | tol-pal system-associated acyl-CoA thioesterase | 0.66 | 19 |
| Rahnella sp. WP5 | 0.33 | EX31_RS02660 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.35 | EX31_RS23475 | | tol-pal system-associated acyl-CoA thioesterase | low | > 89 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.33 | GFF3048 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.24 | GFF4650 | | 4-hydroxybenzoyl-CoA thioesterase family active site | low | > 78 |
| Pseudomonas fluorescens SBW25 | 0.33 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.41 | PFLU_RS24080 | | tol-pal system-associated acyl-CoA thioesterase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.33 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.41 | PFLU_RS24080 | | tol-pal system-associated acyl-CoA thioesterase | low | > 109 |
| Pseudomonas simiae WCS417 | 0.33 | PS417_26545 | | 16S rRNA methyltransferase | 0.41 | PS417_22440 | | 4-hydroxybenzoyl-CoA thioesterase | — | — |
| Serratia liquefaciens MT49 | 0.33 | IAI46_21385 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.35 | IAI46_06315 | | tol-pal system-associated acyl-CoA thioesterase | low | > 86 |
| Acinetobacter radioresistens SK82 | 0.33 | MPMX26_01001 | | Ribosomal RNA small subunit methyltransferase E | 0.31 | MPMX26_02190 | | Acyl-CoA thioesterase YbgC | — | — |
| Dickeya dadantii 3937 | 0.33 | DDA3937_RS18555 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.33 | DDA3937_RS06495 | | tol-pal system-associated acyl-CoA thioesterase | low | > 74 |
| Dickeya dianthicola ME23 | 0.33 | DZA65_RS19625 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.33 | DZA65_RS06890 | | tol-pal system-associated acyl-CoA thioesterase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.32 | HGI48_RS18490 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.33 | HGI48_RS06540 | | tol-pal system-associated acyl-CoA thioesterase | low | > 71 |
| Enterobacter sp. TBS_079 | 0.32 | MPMX20_03804 | | Ribosomal RNA small subunit methyltransferase E | 0.34 | MPMX20_01365 | | Acyl-CoA thioester hydrolase YbgC | low | > 85 |
| Enterobacter asburiae PDN3 | 0.32 | EX28DRAFT_2984 | | RNA methyltransferase, RsmE family | 0.35 | EX28DRAFT_2255 | | tol-pal system-associated acyl-CoA thioesterase | low | > 76 |
| Klebsiella michiganensis M5al | 0.32 | BWI76_RS24070 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.35 | BWI76_RS08515 | | acyl-CoA thioesterase YbgC | low | > 92 |
| Shewanella amazonensis SB2B | 0.31 | Sama_0575 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.39 | Sama_2090 | | hypothetical protein (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.31 | Shewana3_3444 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.38 | Shewana3_2535 | | 4-hydroxybenzoyl-CoA thioesterase (RefSeq) | low | > 73 |
| Pantoea sp. MT58 | 0.31 | IAI47_03620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.34 | IAI47_13705 | | tol-pal system-associated acyl-CoA thioesterase | low | > 76 |
| Rhodanobacter denitrificans FW104-10B01 | 0.31 | LRK54_RS04160 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.40 | LRK54_RS04895 | | tol-pal system-associated acyl-CoA thioesterase | low | > 59 |
| Shewanella oneidensis MR-1 | 0.30 | SO0832 | | conserved hypothetical protein TIGR00046 (NCBI ptt file) | 0.38 | SO2752 | | conserved hypothetical protein TIGR00051 (NCBI ptt file) | low | > 76 |
| Rhodanobacter denitrificans MT42 | 0.30 | LRK55_RS03930 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.40 | LRK55_RS04675 | | tol-pal system-associated acyl-CoA thioesterase | low | > 63 |
| Vibrio cholerae E7946 ATCC 55056 | 0.30 | CSW01_02495 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.39 | CSW01_09215 | | tol-pal system-associated acyl-CoA thioesterase | 0.43 | 11 |
| Pectobacterium carotovorum WPP14 | 0.30 | HER17_RS02640 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.35 | HER17_RS14885 | | tol-pal system-associated acyl-CoA thioesterase | low | > 75 |
| Kangiella aquimarina DSM 16071 | 0.30 | B158DRAFT_0180 | | RNA methyltransferase, RsmE family | 0.39 | B158DRAFT_1137 | | tol-pal system-associated acyl-CoA thioesterase | — | — |
| Alteromonas macleodii MIT1002 | 0.29 | MIT1002_03054 | | Ribosomal RNA small subunit methyltransferase E | 0.36 | MIT1002_01334 | | Acyl-CoA thioester hydrolase YbgC | low | > 70 |
| Castellaniella sp019104865 MT123 | 0.29 | ABCV34_RS15445 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.36 | ABCV34_RS09830 | | tol-pal system-associated acyl-CoA thioesterase | low | > 48 |
| Shewanella loihica PV-4 | 0.29 | Shew_3224 | | hypothetical protein (RefSeq) | 0.39 | Shew_1523 | | 4-hydroxybenzoyl-CoA thioesterase (RefSeq) | low | > 60 |
| Rhodanobacter sp. FW510-T8 | 0.28 | OKGIIK_11035 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.41 | OKGIIK_01855 | ybgC | tol-pal system-associated acyl-CoA thioesterase | low | > 52 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.27 | Xcc-8004.1558.1 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.38 | Xcc-8004.1440.1 | | 4-hydroxybenzoyl-CoA thioesterase family active site | — | — |
| Lysobacter sp. OAE881 | 0.26 | ABIE51_RS05260 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.38 | ABIE51_RS05060 | | tol-pal system-associated acyl-CoA thioesterase | low | > 62 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.21 | Echvi_3055 | | RNA methyltransferase, RsmE family | 0.22 | Echvi_0373 | | acyl-CoA thioester hydrolase, YbgC/YbaW family | low | > 79 |
| Dinoroseobacter shibae DFL-12 | 0.21 | Dshi_3099 | | protein of unknown function DUF558 (RefSeq) | 0.33 | Dshi_1107 | | Pol-Pal system-associated acyl-CoA thioesterase (RefSeq) | low | > 64 |
| Azospirillum brasilense Sp245 | 0.19 | AZOBR_RS11890 | | 16S rRNA methyltransferase | 0.31 | AZOBR_RS09055 | | acyl-CoA thioester hydrolase | low | > 97 |
| Phaeobacter inhibens DSM 17395 | 0.19 | PGA1_c02950 | | RNA methyltransferase-like protein | 0.33 | PGA1_c05890 | | thioesterase domain-containing protein | low | > 62 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.19 | CA264_05265 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.24 | CA264_13075 | | thioesterase | low | > 74 |
| Agrobacterium fabrum C58 | 0.18 | Atu0657 | | hypothetical protein | 0.31 | Atu3718 | | hypothetical protein | low | > 89 |
| Sphingomonas koreensis DSMZ 15582 | 0.18 | Ga0059261_0807 | | RNA methyltransferase, RsmE family | 0.30 | Ga0059261_3161 | | tol-pal system-associated acyl-CoA thioesterase | low | > 68 |
| Rhodopseudomonas palustris CGA009 | 0.18 | TX73_005910 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.31 | TX73_005670 | | tol-pal system-associated acyl-CoA thioesterase | low | > 86 |
| Rhizobium sp. OAE497 | 0.16 | ABIE40_RS03520 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.31 | ABIE40_RS15620 | | tol-pal system-associated acyl-CoA thioesterase | low | > 107 |
| Rhodospirillum rubrum S1H | 0.14 | Rru_A0571 | | hypothetical protein (NCBI) | 0.31 | Rru_A1090 | | 4-hydroxybenzoyl-CoA thioesterase (NCBI) | — | — |
Not shown: 18 genomes with orthologs for GFF2462 only; 2 genomes with orthologs for GFF5172 only