Conservation of cofitness between PS417_21480 and PS417_23915 in Pseudomonas simiae WCS417

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_21480 23S rRNA pseudouridylate synthase 1.0 PS417_23915 pantoate--beta-alanine ligase 0.43 4
Pseudomonas fluorescens SBW25 0.99 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.98 PFLU_RS25755 pantoate--beta-alanine ligase low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.98 PFLU_RS25755 pantoate--beta-alanine ligase low > 109
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_01405 23S rRNA pseudouridylate synthase 0.84 AO353_14380 pantoate--beta-alanine ligase low > 101
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.85 Pf1N1B4_2853 Pantoate--beta-alanine ligase (EC 6.3.2.1) — —
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.84 Pf6N2E2_5152 Pantoate--beta-alanine ligase (EC 6.3.2.1) — —
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_20125 23S rRNA pseudouridylate synthase 0.84 AO356_16055 pantoate--beta-alanine ligase — —
Pseudomonas sp. RS175 0.92 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.84 PFR28_03722 Pantothenate synthetase — —
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.84 PfGW456L13_1520 Pantoate--beta-alanine ligase (EC 6.3.2.1) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.78 Psyr_0827 pantothenate synthetase low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.78 Psyr_0827 pantothenate synthetase low > 86
Pseudomonas putida KT2440 0.86 PP_1906 ribosomal large subunit pseudouridine synthase C 0.80 PP_4700 pantothenate synthetase low > 96
Pseudomonas stutzeri RCH2 0.82 Psest_1680 pseudouridine synthase, RluA family 0.69 Psest_0995 pantoate--beta-alanine ligase — —
Pseudomonas sp. S08-1 0.81 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase 0.72 OH686_17240 pantoate--beta-alanine ligase — —
Pantoea sp. MT58 0.56 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.48 IAI47_15660 pantoate--beta-alanine ligase low > 76
Pectobacterium carotovorum WPP14 0.55 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 HER17_RS05555 pantoate--beta-alanine ligase low > 75
Rahnella sp. WP5 0.55 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.48 EX31_RS03285 pantoate--beta-alanine ligase low > 89
Erwinia tracheiphila SCR3 0.54 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 LU632_RS20105 panC pantoate--beta-alanine ligase low > 74
Escherichia coli ECOR38 0.54 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.50 HEPCGN_08380 panC pantoate--beta-alanine ligase low > 85
Escherichia coli ECOR27 0.54 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.50 NOLOHH_02750 panC pantoate--beta-alanine ligase low > 57
Escherichia coli BW25113 0.54 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.50 b0133 panC pantoate--beta-alanine ligase (NCBI) low > 76
Escherichia coli BL21 0.54 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.50 ECD_00132 pantothenate synthetase low > 60
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.50 OHPLBJKB_03528 Pantothenate synthetase low > 73
Escherichia fergusonii Becca 0.54 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.50 EFB2_03911 Pantothenate synthetase low > 86
Escherichia coli ECRC62 0.54 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.50 BNILDI_08920 panC pantoate--beta-alanine ligase — —
Escherichia coli ECRC101 0.54 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.50 MCAODC_00920 panC pantoate--beta-alanine ligase — —
Escherichia coli ECRC101 0.54 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.50 OKFHMN_10405 panC pantoate--beta-alanine ligase — —
Escherichia coli ECRC102 0.54 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.50 NIAGMN_08255 panC pantoate--beta-alanine ligase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.50 GFF92 Pantoate--beta-alanine ligase (EC 6.3.2.1) low > 78
Enterobacter asburiae PDN3 0.54 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.46 EX28DRAFT_3729 pantoate--beta-alanine ligase low > 76
Escherichia coli ECRC98 0.54 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.50 JDDGAC_14000 panC pantoate--beta-alanine ligase — —
Escherichia coli ECRC99 0.54 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.50 KEDOAH_17750 panC pantoate--beta-alanine ligase — —
Enterobacter sp. TBS_079 0.54 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.46 MPMX20_00826 Pantothenate synthetase low > 85
Alteromonas macleodii MIT1002 0.54 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C 0.55 MIT1002_03695 Pantothenate synthetase — —
Klebsiella michiganensis M5al 0.54 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.49 BWI76_RS04990 pantoate--beta-alanine ligase 0.23 65
Shewanella amazonensis SB2B 0.53 Sama_1988 pseudouridylate synthase (RefSeq) 0.51 Sama_0775 panC pantoate--beta-alanine ligase (RefSeq) — —
Dickeya dadantii 3937 0.53 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 DDA3937_RS15960 pantoate--beta-alanine ligase low > 74
Serratia liquefaciens MT49 0.53 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.50 IAI46_21245 pantoate--beta-alanine ligase low > 86
Dickeya dianthicola ME23 0.53 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.48 DZA65_RS17160 pantoate--beta-alanine ligase low > 75
Dickeya dianthicola 67-19 0.53 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.47 HGI48_RS16075 pantoate--beta-alanine ligase low > 71
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) 0.51 B158DRAFT_0062 pantoate--beta-alanine ligase — —
Shewanella loihica PV-4 0.52 Shew_1594 RluA family pseudouridine synthase (RefSeq) 0.51 Shew_3134 pantoate--beta-alanine ligase (RefSeq) — —
Shewanella sp. ANA-3 0.52 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) 0.49 Shewana3_3409 panC pantoate--beta-alanine ligase (RefSeq) — —
Marinobacter adhaerens HP15 0.49 HP15_2221 pseudouridine synthase, RluA family 0.62 HP15_323 pantothenate synthetase — —
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.50 CSW01_03130 pantoate--beta-alanine ligase — —
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C 0.44 HSERO_RS15520 pantoate--beta-alanine ligase — —
Paraburkholderia graminis OAS925 0.45 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase 0.42 ABIE53_001260 pantoate--beta-alanine ligase — —
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS04500 RluA family pseudouridine synthase 0.42 QEN71_RS25065 pantoate--beta-alanine ligase — —
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase 0.41 H281DRAFT_00150 pantothenate synthetase — —
Dechlorosoma suillum PS 0.44 Dsui_2437 pseudouridine synthase, RluA family 0.46 Dsui_1470 pantoate--beta-alanine ligase — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C 0.41 BPHYT_RS04925 pantothenate synthetase — —
Lysobacter sp. OAE881 0.43 ABIE51_RS11800 RluA family pseudouridine synthase 0.48 ABIE51_RS08030 pantoate--beta-alanine ligase — —
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS14155 pseudouridine synthase 0.42 RR42_RS16055 pantothenate synthetase — —
Ralstonia solanacearum GMI1000 0.42 RS_RS05155 RluA family pseudouridine synthase 0.44 RS_RS11985 pantoate--beta-alanine ligase — —
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS10090 RluA family pseudouridine synthase 0.42 ABZR87_RS00030 pantoate--beta-alanine ligase — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.43 Xcc-8004.3051.1 Pantoate--beta-alanine ligase (EC 6.3.2.1) — —
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS14375 RluA family pseudouridine synthase 0.43 RALBFv3_RS04435 pantoate--beta-alanine ligase — —
Ralstonia solanacearum PSI07 0.42 RPSI07_RS19085 RluA family pseudouridine synthase 0.42 RPSI07_RS12935 pantoate--beta-alanine ligase — —
Ralstonia solanacearum UW163 0.42 UW163_RS11840 RluA family pseudouridine synthase 0.43 UW163_RS09235 pantoate--beta-alanine ligase — —
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS17895 RluA family pseudouridine synthase 0.50 LRK54_RS15120 pantoate--beta-alanine ligase — —
Rhodanobacter denitrificans MT42 0.42 LRK55_RS17750 RluA family pseudouridine synthase 0.50 LRK55_RS14835 pantoate--beta-alanine ligase low > 63
Acinetobacter radioresistens SK82 0.41 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C 0.49 MPMX26_00546 Pantothenate synthetase — —
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase 0.48 OKGIIK_03890 panC pantoate--beta-alanine ligase low > 52
Acidovorax sp. GW101-3H11 0.40 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.36 Ac3H11_3840 Pantoate--beta-alanine ligase (EC 6.3.2.1) low > 79
Variovorax sp. SCN45 0.40 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) 0.43 GFF2578 Pantoate--beta-alanine ligase (EC 6.3.2.1) low > 127
Variovorax sp. OAS795 0.40 ABID97_RS08250 RluA family pseudouridine synthase 0.42 ABID97_RS07430 pantoate--beta-alanine ligase low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.40 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.36 GFF1220 Pantoate--beta-alanine ligase (EC 6.3.2.1) — —
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS02725 RluA family pseudouridine synthase 0.49 ABZR86_RS00820 pantoate--beta-alanine ligase — —
Castellaniella sp019104865 MT123 0.39 ABCV34_RS08415 RluA family pseudouridine synthase 0.40 ABCV34_RS14585 pantoate--beta-alanine ligase — —
Agrobacterium fabrum C58 0.29 Atu1471 ribosomal large subunit pseudouridine synthase C 0.43 Atu3482 pantoate--beta-alanine ligase — —
Rhizobium sp. OAE497 0.28 ABIE40_RS09915 RluA family pseudouridine synthase 0.41 ABIE40_RS09460 pantoate--beta-alanine ligase low > 107
Rhodospirillum rubrum S1H 0.27 Rru_A2659 Pseudouridine synthase, RluD (NCBI) 0.46 Rru_A3320 Cytidyltransferase-related (NCBI) — —
Sinorhizobium meliloti 1021 0.26 SMc01275 ribosomal large subunit pseudouridine synthase C protein 0.44 SMc01880 pantoate--beta-alanine ligase low > 103
Magnetospirillum magneticum AMB-1 0.24 AMB_RS15620 RluA family pseudouridine synthase 0.47 AMB_RS22115 pantoate--beta-alanine ligase — —
Phaeobacter inhibens DSM 17395 0.24 PGA1_c01950 ribosomal large subunit pseudouridine synthase C 0.37 PGA1_c32040 pantothenate synthetase PanC — —
Azospirillum sp. SherDot2 0.24 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C 0.41 MPMX19_04465 Pantothenate synthetase low > 112
Sphingomonas koreensis DSMZ 15582 0.23 Ga0059261_1033 pseudouridine synthase, RluA family 0.44 Ga0059261_2453 pantoate--beta-alanine ligase — —
Dinoroseobacter shibae DFL-12 0.23 Dshi_0315 pseudouridine synthase, RluA family (RefSeq) 0.44 Dshi_2952 pantoate--beta-alanine ligase (RefSeq) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS07865 RluA family pseudouridine synthase 0.41 A4249_RS06825 pantoate--beta-alanine ligase — —
Azospirillum brasilense Sp245 0.22 AZOBR_RS06905 pseudouridine synthase 0.44 AZOBR_RS09715 pantoate--beta-alanine ligase low > 97
Caulobacter crescentus NA1000 0.22 CCNA_02059 ribosomal large subunit pseudouridine synthase C 0.43 CCNA_02247 pantoate-beta-alanine ligase — —
Caulobacter crescentus NA1000 Δfur 0.22 CCNA_02059 ribosomal large subunit pseudouridine synthase C 0.43 CCNA_02247 pantoate-beta-alanine ligase — —
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU3191 rluC ribosomal large subunit pseudouridine synthase C (TIGR) 0.36 DVU2448 panC pantoate--beta-alanine ligase (TIGR) low > 55

Not shown: 2 genomes with orthologs for PS417_21480 only; 15 genomes with orthologs for PS417_23915 only