Conservation of cofitness between Psest_4191 and Psest_0411 in Pseudomonas stutzeri RCH2

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_4191 Transcriptional regulator 1.0 Psest_0411 biotin synthetase 0.27 12
Pseudomonas fluorescens FW300-N2E2 0.90 Pf6N2E2_4353 Hydrogen peroxide-inducible genes activator 0.90 Pf6N2E2_4759 Biotin synthase (EC 2.8.1.6) low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_0202 transcriptional regulator, LysR family 0.89 Psyr_4687 biotin synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_0202 transcriptional regulator, LysR family 0.89 Psyr_4687 biotin synthase low > 86
Pseudomonas putida KT2440 0.88 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.92 PP_0362 Biotin synthase low > 96
Pseudomonas simiae WCS417 0.87 PS417_27865 LysR family transcriptional regulator 0.89 PS417_26005 biotin synthase low > 88
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_12385 LysR family transcriptional regulator 0.90 AO356_14135 biotin synthase low > 104
Pseudomonas fluorescens SBW25 0.87 PFLU_RS29545 hydrogen peroxide-inducible genes activator 0.90 PFLU_RS27650 biotin synthase BioB low > 109
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS29545 hydrogen peroxide-inducible genes activator 0.90 PFLU_RS27650 biotin synthase BioB low > 109
Pseudomonas sp. RS175 0.86 PFR28_04434 Hydrogen peroxide-inducible genes activator 0.90 PFR28_04103 Biotin synthase low > 88
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_09315 LysR family transcriptional regulator 0.89 AO353_07525 biotin synthase low > 101
Pseudomonas sp. S08-1 0.86 OH686_13510 Hydrogen peroxide-inducible genes activator 0.94 OH686_10355 biotin synthase low > 80
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_773 Hydrogen peroxide-inducible genes activator 0.90 PfGW456L13_1147 Biotin synthase (EC 2.8.1.6) low > 87
Pseudomonas fluorescens FW300-N1B4 0.85 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator 0.90 Pf1N1B4_2487 Biotin synthase (EC 2.8.1.6) low > 87
Marinobacter adhaerens HP15 0.64 HP15_308 oxidative stress regulatory protein OxyR 0.70 HP15_2486 biotin synthase low > 73
Dechlorosoma suillum PS 0.54 Dsui_0823 transcriptional regulator 0.52 Dsui_1297 biotin synthetase low > 51
Castellaniella sp019104865 MT123 0.53 ABCV34_RS03575 LysR substrate-binding domain-containing protein 0.55 ABCV34_RS15280 biotin synthase BioB low > 48
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_0567 Transcriptional regulator 0.67 B158DRAFT_0864 biotin synthase (EC 2.8.1.6) — —
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS05605 hydrogen peroxide-inducible genes activator 0.59 RALBFv3_RS10465 biotin synthase BioB low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS08020 hydrogen peroxide-inducible genes activator 0.59 UW163_RS03115 biotin synthase BioB — —
Ralstonia solanacearum PSI07 0.51 RPSI07_RS11690 hydrogen peroxide-inducible genes activator 0.59 RPSI07_RS22850 biotin synthase BioB low > 81
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_04673 transcriptional regulator, LysR family 0.58 H281DRAFT_02097 biotin synthase 0.45 27
Ralstonia solanacearum GMI1000 0.51 RS_RS13470 hydrogen peroxide-inducible genes activator 0.60 RS_RS01305 biotin synthase low > 80
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS03470 LysR family transcriptional regulator 0.58 BPHYT_RS02150 biotin synthase low > 109
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS26625 LysR substrate-binding domain-containing protein 0.59 QEN71_RS01085 biotin synthase BioB — —
Paraburkholderia graminis OAS925 0.50 ABIE53_000834 LysR family hydrogen peroxide-inducible transcriptional activator 0.58 ABIE53_000577 biotin synthase low > 113
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS01255 LysR substrate-binding domain-containing protein 0.60 ABZR87_RS06265 biotin synthase BioB low > 80
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS18935 LysR family transcriptional regulator 0.51 HSERO_RS12235 biotin synthase low > 78
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS17385 LysR family transcriptional regulator 0.58 RR42_RS00940 biotin synthase low > 128
Variovorax sp. SCN45 0.47 GFF5549 Hydrogen peroxide-inducible genes activator => OxyR 0.53 GFF937 Biotin synthase (EC 2.8.1.6) low > 127
Variovorax sp. OAS795 0.46 ABID97_RS01570 LysR substrate-binding domain-containing protein 0.53 ABID97_RS13955 biotin synthase BioB low > 91
Acidovorax sp. GW101-3H11 0.45 Ac3H11_784 Hydrogen peroxide-inducible genes activator 0.54 Ac3H11_2272 Biotin synthase (EC 2.8.1.6) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF2803 Hydrogen peroxide-inducible genes activator 0.56 GFF3992 Biotin synthase (EC 2.8.1.6) low > 90
Dickeya dianthicola 67-19 0.37 HGI48_RS20405 DNA-binding transcriptional regulator OxyR 0.68 HGI48_RS08675 biotin synthase BioB 0.75 47
Dickeya dianthicola ME23 0.37 DZA65_RS21450 DNA-binding transcriptional regulator OxyR 0.68 DZA65_RS08965 biotin synthase BioB low > 75
Escherichia coli Nissle 1917 0.37 ECOLIN_RS22870 DNA-binding transcriptional regulator OxyR 0.69 ECOLIN_RS04130 biotin synthase BioB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_04089 Hydrogen peroxide-inducible genes activator 0.69 OHPLBJKB_02938 Biotin synthase low > 73
Escherichia coli ECRC101 0.37 OKFHMN_13565 oxyR DNA-binding transcriptional regulator OxyR 0.68 OKFHMN_06400 bioB biotin synthase BioB — —
Escherichia coli ECRC62 0.37 BNILDI_05825 oxyR DNA-binding transcriptional regulator OxyR 0.69 BNILDI_21040 bioB biotin synthase BioB — —
Escherichia coli BL21 0.37 ECD_03846 oxidative and nitrosative stress transcriptional regulator 0.69 ECD_00742 biotin synthase low > 60
Escherichia coli ECRC101 0.37 MCAODC_04065 oxyR DNA-binding transcriptional regulator OxyR 0.68 MCAODC_25615 bioB biotin synthase BioB — —
Escherichia coli BW25113 0.37 b3961 oxyR DNA-binding transcriptional dual regulator (NCBI) 0.69 b0775 bioB biotin synthase (NCBI) low > 76
Escherichia coli ECOR38 0.37 HEPCGN_12210 oxyR DNA-binding transcriptional regulator OxyR 0.69 HEPCGN_01640 bioB biotin synthase BioB low > 85
Dickeya dadantii 3937 0.37 DDA3937_RS00970 DNA-binding transcriptional regulator OxyR 0.68 DDA3937_RS08510 biotin synthase BioB low > 74
Escherichia coli ECOR27 0.37 NOLOHH_05700 oxyR DNA-binding transcriptional regulator OxyR 0.69 NOLOHH_22770 bioB biotin synthase BioB low > 57
Escherichia coli ECRC99 0.37 KEDOAH_14595 oxyR DNA-binding transcriptional regulator OxyR 0.68 KEDOAH_21510 bioB biotin synthase BioB — —
Escherichia fergusonii Becca 0.37 EFB2_04651 Hydrogen peroxide-inducible genes activator 0.69 EFB2_03330 Biotin synthase low > 86
Escherichia coli ECRC102 0.37 NIAGMN_11315 oxyR DNA-binding transcriptional regulator OxyR 0.68 NIAGMN_04445 bioB biotin synthase BioB — —
Escherichia coli ECRC98 0.37 JDDGAC_17190 oxyR DNA-binding transcriptional regulator OxyR 0.68 JDDGAC_10035 bioB biotin synthase BioB — —
Pectobacterium carotovorum WPP14 0.36 HER17_RS00955 DNA-binding transcriptional regulator OxyR 0.68 HER17_RS13460 biotin synthase BioB 0.78 9
Enterobacter sp. TBS_079 0.36 MPMX20_04519 Hydrogen peroxide-inducible genes activator 0.67 MPMX20_01403 Biotin synthase low > 85
Enterobacter asburiae PDN3 0.36 EX28DRAFT_4424 Transcriptional regulator 0.67 EX28DRAFT_2216 biotin synthase (EC 2.8.1.6) — —
Klebsiella michiganensis M5al 0.36 BWI76_RS00865 DNA-binding transcriptional regulator OxyR 0.69 BWI76_RS08760 biotin synthase low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF2347 Hydrogen peroxide-inducible genes activator 0.68 GFF671 Biotin synthase (EC 2.8.1.6) low > 78
Rahnella sp. WP5 0.35 EX31_RS14170 DNA-binding transcriptional regulator OxyR 0.68 EX31_RS23695 biotin synthase BioB low > 89
Pantoea sp. MT58 0.35 IAI47_00930 DNA-binding transcriptional regulator OxyR 0.69 IAI47_13530 biotin synthase BioB low > 76
Serratia liquefaciens MT49 0.35 IAI46_24475 DNA-binding transcriptional regulator OxyR 0.69 IAI46_06525 biotin synthase BioB low > 86
Erwinia tracheiphila SCR3 0.35 LU632_RS19590 oxyR DNA-binding transcriptional regulator OxyR 0.69 LU632_RS09130 bioB biotin synthase BioB — —
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_01995 lysR DNA-binding transcriptional regulator OxyR 0.56 OKGIIK_13650 bioB biotin synthase BioB low > 52
Magnetospirillum magneticum AMB-1 0.33 AMB_RS03045 hydrogen peroxide-inducible genes activator 0.59 AMB_RS13865 biotin synthase — —
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_13340 DNA-binding transcriptional regulator OxyR 0.69 CSW01_05645 biotin synthase low > 62
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_0159 Transcriptional regulator 0.55 Ga0059261_3989 biotin synthase (EC 2.8.1.6) low > 68
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_03811 LysR-family transcriptional regulator 0.53 CCNA_03636 biotin synthase — —
Caulobacter crescentus NA1000 0.32 CCNA_03811 LysR-family transcriptional regulator 0.53 CCNA_03636 biotin synthase low > 66
Xanthomonas campestris pv. campestris strain 8004 0.32 Xcc-8004.4224.1 Hydrogen peroxide-inducible genes activator 0.57 Xcc-8004.505.1 Biotin synthase (EC 2.8.1.6) low > 74
Rhodanobacter denitrificans MT42 0.31 LRK55_RS04545 LysR substrate-binding domain-containing protein 0.55 LRK55_RS09900 biotin synthase BioB low > 63
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS04765 LysR substrate-binding domain-containing protein 0.55 LRK54_RS10260 biotin synthase BioB low > 59
Lysobacter sp. OAE881 0.31 ABIE51_RS05475 LysR substrate-binding domain-containing protein 0.60 ABIE51_RS01140 biotin synthase BioB low > 62
Echinicola vietnamensis KMM 6221, DSM 17526 0.30 Echvi_1045 Transcriptional regulator 0.51 Echvi_2566 biotin synthetase low > 79
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS19355 DNA-binding transcriptional regulator OxyR 0.57 ABZR86_RS15840 biotin synthase BioB low > 74
Phaeobacter inhibens DSM 17395 0.30 PGA1_78p00040 hydrogen peroxide-inducible genes activator OxyR 0.54 PGA1_c09120 biotin synthase BioB — —
Agrobacterium fabrum C58 0.29 Atu4641 LysR family transcriptional regulator 0.56 Atu3997 biotin synthetase low > 89
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS19680 DNA-binding transcriptional regulator OxyR 0.47 CA265_RS09475 biotin synthase BioB low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS18535 hydrogen peroxide-inducible genes activator 0.48 ABZR88_RS10190 biotin synthase BioB low > 71
Pontibacter actiniarum KMM 6156, DSM 19842 0.28 CA264_13765 DNA-binding transcriptional regulator OxyR 0.48 CA264_02425 biotin synthase BioB low > 74
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS06075 hydrogen peroxide-inducible genes activator 0.23 ABI39_RS14240 biotin synthase BioB low > 72
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS01140 hydrogen peroxide-inducible genes activator 0.26 HMPREF1078_RS15300 biotin synthase BioB low > 61
Rhodopseudomonas palustris CGA009 0.26 TX73_002235 LysR substrate-binding domain-containing protein 0.54 TX73_010535 biotin synthase BioB low > 86
Acinetobacter radioresistens SK82 0.26 MPMX26_02334 Hydrogen peroxide-inducible genes activator 0.58 MPMX26_01785 Biotin synthase low > 36
Shewanella oneidensis MR-1 0.25 SO1328 transcriptional regulator, LysR family (NCBI ptt file) 0.64 SO2740 bioB biotin synthase (NCBI ptt file) — —
Shewanella sp. ANA-3 0.25 Shewana3_3046 LysR family transcriptional regulator (RefSeq) 0.64 Shewana3_2519 biotin synthase (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.24 MIT1002_01120 Morphology and auto-aggregation control protein 0.69 MIT1002_01379 Biotin synthase low > 70
Shewanella amazonensis SB2B 0.24 Sama_0860 LysR family transcriptional regulator (RefSeq) 0.64 Sama_1438 biotin synthase (RefSeq) — —
Rhizobium sp. OAE497 0.23 ABIE40_RS15045 hydrogen peroxide-inducible genes activator 0.54 ABIE40_RS21075 biotin synthase BioB low > 107
Shewanella loihica PV-4 0.23 Shew_1035 LysR family transcriptional regulator (RefSeq) 0.63 Shew_1719 biotin synthase (RefSeq) — —

Not shown: 10 genomes with orthologs for Psest_4191 only; 8 genomes with orthologs for Psest_0411 only