| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Marinobacter adhaerens HP15 | 1.0 | HP15_784 | | ribonuclease 3 | 1.0 | HP15_2080 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.58 | 3 |
| Pseudomonas putida KT2440 | 0.60 | PP_1433 | | Ribonuclease 3 | 0.78 | PP_4008 | | ATP-dependent serine protease | — | — |
| Pseudomonas stutzeri RCH2 | 0.59 | Psest_3092 | | ribonuclease III, bacterial | 0.77 | Psest_2027 | | ATP-dependent Clp protease ATP-binding subunit clpA | low | > 67 |
| Kangiella aquimarina DSM 16071 | 0.57 | B158DRAFT_2187 | | ribonuclease III, bacterial | 0.70 | B158DRAFT_1505 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | 0.54 | 14 |
| Pseudomonas fluorescens FW300-N2C3 | 0.57 | AO356_17495 | | ribonuclease III | 0.77 | AO356_22150 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.57 | CSW01_12455 | | ribonuclease 3 | 0.67 | CSW01_05805 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.57 | Pf6N2E2_5426 | | Ribonuclease III (EC 3.1.26.3) | 0.77 | Pf6N2E2_292 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.57 | Psyr_3951 | | RNAse III | 0.77 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.57 | Psyr_3951 | | RNAse III | 0.77 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.56 | AO353_04510 | | ribonuclease III | 0.77 | AO353_27675 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas simiae WCS417 | 0.56 | PS417_05190 | | ribonuclease III | 0.78 | PS417_16510 | | Clp protease ClpX | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.56 | PFLU_RS05260 | | ribonuclease III | 0.77 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas fluorescens SBW25 | 0.56 | PFLU_RS05260 | | ribonuclease III | 0.77 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas sp. S08-1 | 0.54 | OH686_20080 | | ribonuclease III | 0.78 | OH686_00235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas sp. RS175 | 0.54 | PFR28_03523 | | Ribonuclease 3 | 0.78 | PFR28_02613 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Shewanella amazonensis SB2B | 0.53 | Sama_0880 | rnc | ribonuclease III (RefSeq) | 0.70 | Sama_2056 | | ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.53 | PfGW456L13_4840 | | Ribonuclease III (EC 3.1.26.3) | 0.77 | PfGW456L13_2646 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.53 | Pf1N1B4_892 | | Ribonuclease III (EC 3.1.26.3) | 0.76 | Pf1N1B4_4055 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Shewanella oneidensis MR-1 | 0.52 | SO1348 | rnc | ribonuclease III (NCBI ptt file) | 0.69 | SO2626 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.52 | Shewana3_3026 | rnc | ribonuclease III (RefSeq) | 0.69 | Shewana3_1753 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | — | — |
| Pectobacterium carotovorum WPP14 | 0.52 | HER17_RS05815 | | ribonuclease III | 0.68 | HER17_RS12400 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECRC101 | 0.52 | MCAODC_11940 | rnc | ribonuclease III | 0.68 | MCAODC_25000 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECRC101 | 0.52 | OKFHMN_21410 | rnc | ribonuclease III | 0.68 | OKFHMN_05785 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECRC62 | 0.52 | BNILDI_11885 | rnc | ribonuclease III | 0.68 | BNILDI_20435 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECRC98 | 0.52 | JDDGAC_25075 | rnc | ribonuclease III | 0.68 | JDDGAC_09420 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia fergusonii Becca | 0.52 | EFB2_01329 | | Ribonuclease 3 | 0.68 | EFB2_03179 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECRC102 | 0.52 | NIAGMN_19180 | rnc | ribonuclease III | 0.68 | NIAGMN_03825 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECOR38 | 0.52 | HEPCGN_20555 | rnc | ribonuclease III | 0.68 | HEPCGN_22900 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli BL21 | 0.52 | ECD_02461 | | RNase III | 0.67 | ECD_00887 | | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity | — | — |
| Shewanella loihica PV-4 | 0.52 | Shew_1054 | | ribonuclease III (RefSeq) | 0.70 | Shew_1566 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | — | — |
| Escherichia coli ECRC99 | 0.52 | KEDOAH_06810 | rnc | ribonuclease III | 0.68 | KEDOAH_22125 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Enterobacter asburiae PDN3 | 0.52 | EX28DRAFT_0079 | | ribonuclease III, bacterial | 0.68 | EX28DRAFT_2050 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.52 | OHPLBJKB_01140 | | Ribonuclease 3 | 0.68 | OHPLBJKB_02786 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli BW25113 | 0.52 | b2567 | rnc | ribonuclease III (NCBI) | 0.68 | b0882 | clpA | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | low | > 76 |
| Escherichia coli ECOR27 | 0.52 | NOLOHH_13085 | rnc | ribonuclease III | 0.68 | NOLOHH_22180 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli Nissle 1917 | 0.52 | ECOLIN_RS14530 | | ribonuclease III | 0.68 | ECOLIN_RS04695 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Enterobacter sp. TBS_079 | 0.51 | MPMX20_03438 | | Ribonuclease 3 | 0.68 | MPMX20_01544 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Klebsiella michiganensis M5al | 0.51 | BWI76_RS21320 | | ribonuclease 3 | 0.67 | BWI76_RS09615 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Erwinia tracheiphila SCR3 | 0.51 | LU632_RS15385 | rnc | ribonuclease III | 0.65 | LU632_RS09705 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Dickeya dianthicola ME23 | 0.51 | DZA65_RS16900 | | ribonuclease III | 0.67 | DZA65_RS09885 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.51 | GFF2475 | | Ribonuclease III (EC 3.1.26.3) | 0.67 | GFF4901 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 78 |
| Dickeya dadantii 3937 | 0.51 | DDA3937_RS15735 | | ribonuclease III | 0.67 | DDA3937_RS09560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Dickeya dianthicola 67-19 | 0.51 | HGI48_RS15820 | | ribonuclease III | 0.67 | HGI48_RS09575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Pantoea sp. MT58 | 0.50 | IAI47_04880 | | ribonuclease III | 0.67 | IAI47_12945 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Serratia liquefaciens MT49 | 0.50 | IAI46_19550 | | ribonuclease III | 0.66 | IAI46_08515 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.49 | Xcc-8004.3673.1 | | Ribonuclease III (EC 3.1.26.3) | 0.68 | Xcc-8004.2754.1 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Rahnella sp. WP5 | 0.49 | EX31_RS21835 | | ribonuclease III | 0.66 | EX31_RS18560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum UW163 | 0.48 | UW163_RS11950 | | ribonuclease III | 0.63 | UW163_RS08860 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.48 | RALBFv3_RS14485 | | ribonuclease III | 0.63 | RALBFv3_RS04810 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia sp. UNC404CL21Col | 0.48 | ABZR87_RS10205 | | ribonuclease III | 0.64 | ABZR87_RS00435 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum PSI07 | 0.47 | RPSI07_RS18975 | | ribonuclease III | 0.63 | RPSI07_RS12575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Alteromonas macleodii MIT1002 | 0.47 | MIT1002_02713 | | Ribonuclease 3 | 0.68 | MIT1002_01834 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum GMI1000 | 0.47 | RS_RS05265 | | ribonuclease 3 | 0.64 | RS_RS12370 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.46 | ABZR86_RS07150 | | ribonuclease III | 0.68 | ABZR86_RS02200 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.46 | RR42_RS14040 | | ribonuclease III | 0.63 | RR42_RS17105 | | Clp protease ClpX | — | — |
| Lysobacter sp. OAE881 | 0.46 | ABIE51_RS13860 | | ribonuclease III | 0.67 | ABIE51_RS11490 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Dechlorosoma suillum PS | 0.45 | Dsui_2460 | | ribonuclease III | 0.64 | Dsui_0009 | | ATP-dependent Clp protease ATP-binding subunit clpA | — | — |
| Acinetobacter radioresistens SK82 | 0.45 | MPMX26_02156 | | Ribonuclease 3 | 0.63 | MPMX26_01284 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_07870 | rnc | ribonuclease III | 0.67 | OKGIIK_06890 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.43 | LRK54_RS16970 | | ribonuclease III | 0.68 | LRK54_RS00420 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.43 | LRK55_RS16685 | | ribonuclease III | 0.68 | LRK55_RS00160 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 63 |
| Castellaniella sp019104865 MT123 | 0.42 | ABCV34_RS08325 | | ribonuclease III | 0.61 | ABCV34_RS05305 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.40 | GFF3346 | | Ribonuclease III (EC 3.1.26.3) | 0.62 | GFF4521 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Variovorax sp. OAS795 | 0.39 | ABID97_RS08365 | | ribonuclease III | 0.62 | ABID97_RS16910 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.39 | Ac3H11_1566 | | Ribonuclease III (EC 3.1.26.3) | 0.62 | Ac3H11_2456 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Variovorax sp. SCN45 | 0.38 | GFF3870 | | Ribonuclease III (EC 3.1.26.3) | 0.62 | GFF341 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 127 |
| Azospirillum brasilense Sp245 | 0.32 | AZOBR_RS22070 | | ribonuclease III | 0.62 | AZOBR_RS05175 | | ATP-dependent Clp protease ATP-binding protein | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.31 | DvMF_0243 | rnc | ribonuclease III (RefSeq) | 0.50 | DvMF_0458 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.31 | DVU1440 | rnc | ribonuclease III (TIGR) | 0.51 | DVU1602 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (TIGR) | — | — |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_00843 | | Ribonuclease 3 | 0.62 | MPMX19_00503 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Phaeobacter inhibens DSM 17395 | 0.30 | PGA1_c01060 | | ribonuclease 3 | 0.59 | PGA1_c25150 | | ATP-dependent Clp protease ATP-binding subunit | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.30 | Dshi_0200 | | Ribonuclease III (RefSeq) | 0.59 | Dshi_2939 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | — | — |
| Bosea sp. OAE506 | 0.29 | ABIE41_RS19930 | | ribonuclease III | 0.60 | ABIE41_RS18235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Magnetospirillum magneticum AMB-1 | 0.29 | AMB_RS11425 | | ribonuclease III | 0.62 | AMB_RS05705 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 64 |
| Rhodospirillum rubrum S1H | 0.29 | Rru_A1852 | | Ribonuclease III (NCBI) | 0.62 | Rru_A2109 | | ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.29 | A4249_RS05535 | | ribonuclease III | 0.61 | A4249_RS08390 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Agrobacterium fabrum C58 | 0.29 | Atu1035 | | ribonuclease III | 0.58 | Atu1364 | | ATP-dependent Clp protease, ATP-binding subunit | — | — |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_013975 | | ribonuclease III | 0.60 | TX73_016270 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Rhizobium sp. OAE497 | 0.27 | ABIE40_RS06075 | | ribonuclease III | 0.60 | ABIE40_RS08865 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Sinorhizobium meliloti 1021 | 0.26 | SMc02652 | | ribonuclease III | 0.59 | SMc02109 | | ATP-dependent Clp protease ATP-binding subunit protein | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.24 | CCNA_01630 | | ribonuclease III | 0.60 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | — | — |
| Caulobacter crescentus NA1000 | 0.24 | CCNA_01630 | | ribonuclease III | 0.60 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.23 | Ga0059261_1946 | | ribonuclease III, bacterial | 0.61 | Ga0059261_1001 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | — | — |
Not shown: 10 genomes with orthologs for HP15_784 only; 6 genomes with orthologs for HP15_2080 only