Conservation of cofitness between GFF2222 and GFF1500 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF2222 Glutamine synthetase type I (EC 6.3.1.2) 1.0 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.90 13
Escherichia coli Nissle 1917 0.99 ECOLIN_RS22305 glutamate--ammonia ligase 0.95 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB low > 55
Escherichia coli ECRC62 0.99 BNILDI_05300 glnA glutamate--ammonia ligase 0.95 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECOR38 0.99 HEPCGN_12730 glnA glutamate--ammonia ligase 0.95 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.99 OHPLBJKB_04182 Glutamine synthetase 0.95 OHPLBJKB_00534 tRNA pseudouridine synthase B low > 73
Escherichia coli BL21 0.99 ECD_03755 glutamine synthetase 0.95 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase low > 61
Escherichia coli ECOR27 0.99 NOLOHH_06230 glnA glutamate--ammonia ligase 0.95 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC102 0.99 NIAGMN_11855 glnA glutamate--ammonia ligase 0.95 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC99 0.99 KEDOAH_14050 glnA glutamate--ammonia ligase 0.95 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli ECRC98 0.99 JDDGAC_17725 glnA glutamate--ammonia ligase 0.95 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB — —
Escherichia coli BW25113 0.99 b3870 glnA glutamine synthetase (NCBI) 0.95 b3166 truB tRNA pseudouridine synthase B (NCBI) low > 76
Escherichia fergusonii Becca 0.99 EFB2_04746 Glutamine synthetase 0.95 EFB2_00657 tRNA pseudouridine synthase B — —
Escherichia coli ECRC100 0.99 OKFHMN_14100 glnA glutamate--ammonia ligase 0.95 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB low > 80
Escherichia coli ECRC101 0.99 MCAODC_04600 glnA glutamate--ammonia ligase 0.95 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB low > 87
Enterobacter sp. TBS_079 0.97 MPMX20_04595 Glutamine synthetase 0.89 MPMX20_04071 tRNA pseudouridine synthase B low > 85
Enterobacter asburiae PDN3 0.97 EX28DRAFT_4352 glutamine synthetase, type I 0.90 EX28DRAFT_3217 tRNA pseudouridine(55) synthase — —
Klebsiella michiganensis M5al 0.96 BWI76_RS00400 glutamine synthetase 0.90 BWI76_RS25080 tRNA pseudouridine(55) synthase low > 92
Dickeya dadantii 3937 0.94 DDA3937_RS00135 glutamate--ammonia ligase 0.76 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB low > 74
Dickeya dianthicola 67-19 0.93 HGI48_RS21225 glutamate--ammonia ligase 0.75 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB — —
Dickeya dianthicola ME23 0.93 DZA65_RS22200 glutamate--ammonia ligase 0.74 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB — —
Serratia liquefaciens MT49 0.92 IAI46_24950 glutamate--ammonia ligase 0.80 IAI46_01945 tRNA pseudouridine(55) synthase TruB — —
Pectobacterium carotovorum WPP14 0.92 HER17_RS21430 glutamate--ammonia ligase 0.78 HER17_RS18200 tRNA pseudouridine(55) synthase TruB — —
Erwinia tracheiphila SCR3 0.92 LU632_RS22145 glnA glutamate--ammonia ligase 0.74 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB — —
Pantoea sp. MT58 0.92 IAI47_00460 glutamate--ammonia ligase 0.77 IAI47_17015 tRNA pseudouridine(55) synthase TruB low > 76
Rahnella sp. WP5 0.91 EX31_RS15870 glutamate--ammonia ligase 0.75 EX31_RS08530 tRNA pseudouridine(55) synthase TruB low > 89
Vibrio cholerae E7946 ATCC 55056 0.82 CSW01_13850 glutamine synthetase 0.66 CSW01_03400 tRNA pseudouridine(55) synthase TruB — —
Shewanella amazonensis SB2B 0.79 Sama_3416 glnA glutamine synthetase (RefSeq) 0.64 Sama_0963 pseudouridylate synthase (RefSeq) — —
Shewanella loihica PV-4 0.79 Shew_3554 glnA glutamine synthetase (RefSeq) 0.60 Shew_2825 tRNA pseudouridine synthase B (RefSeq) low > 60
Shewanella sp. ANA-3 0.79 Shewana3_0300 glnA glutamine synthetase (RefSeq) 0.63 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) low > 73
Kangiella aquimarina DSM 16071 0.79 B158DRAFT_0717 glutamine synthetase, type I 0.50 B158DRAFT_0108 tRNA pseudouridine 55 synthase — —
Alteromonas macleodii MIT1002 0.78 MIT1002_03183 Glutamine synthetase 0.48 MIT1002_01773 tRNA pseudouridine synthase B — —
Pseudomonas fluorescens FW300-N2E3 0.71 AO353_12170 glutamine synthetase 0.48 AO353_05550 pseudouridine synthase — —
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_1606 Glutamine synthetase type I (EC 6.3.1.2) 0.48 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) — —
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_342 Glutamine synthetase type I (EC 6.3.1.2) 0.48 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) — —
Pseudomonas sp. S08-1 0.71 OH686_10620 glutamine synthetase, type I 0.47 OH686_17155 tRNA pseudouridine(55) synthase — —
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_09705 glutamine synthetase 0.48 AO356_07400 pseudouridine synthase — —
Pseudomonas stutzeri RCH2 0.71 Psest_3928 glutamine synthetase, type I 0.48 Psest_0983 tRNA pseudouridine 55 synthase — —
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_3821 Glutamine synthetase type I (EC 6.3.1.2) 0.48 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) — —
Pseudomonas simiae WCS417 0.71 PS417_01655 glutamine synthetase 0.47 PS417_23960 pseudouridine synthase — —
Pseudomonas sp. RS175 0.71 PFR28_04949 Glutamine synthetase 0.48 PFR28_00092 tRNA pseudouridine synthase B — —
Marinobacter adhaerens HP15 0.70 HP15_428 glutamine synthetase, type I 0.48 HP15_3065 tRNA pseudouridine synthase B — —
Pseudomonas fluorescens SBW25 0.70 PFLU_RS01710 type I glutamate--ammonia ligase 0.48 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB — —
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS01710 type I glutamate--ammonia ligase 0.48 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_4817 L-glutamine synthetase 0.48 Psyr_4178 tRNA pseudouridine synthase B — —
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_4817 L-glutamine synthetase 0.48 Psyr_4178 tRNA pseudouridine synthase B — —
Dechlorosoma suillum PS 0.70 Dsui_1048 glutamine synthetase, type I 0.43 Dsui_2720 tRNA pseudouridine 55 synthase — —
Pseudomonas putida KT2440 0.70 PP_5046 glutamine synthetase 0.48 PP_4710 tRNA pseudouridine 55 synthase — —
Herbaspirillum seropedicae SmR1 0.69 HSERO_RS15690 glutamine synthetase 0.41 HSERO_RS17985 tRNA pseudouridine synthase B — —
Ralstonia solanacearum IBSBF1503 0.69 RALBFv3_RS15525 type I glutamate--ammonia ligase 0.38 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB — —
Ralstonia solanacearum UW163 0.69 UW163_RS12985 type I glutamate--ammonia ligase 0.38 UW163_RS13150 tRNA pseudouridine(55) synthase TruB — —
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS05665 type I glutamate--ammonia ligase 0.38 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB — —
Ralstonia solanacearum GMI1000 0.68 RS_RS06305 type I glutamate--ammonia ligase 0.38 RS_RS06470 tRNA pseudouridine(55) synthase TruB — —
Burkholderia phytofirmans PsJN 0.68 BPHYT_RS12945 glutamine synthetase 0.39 BPHYT_RS08080 tRNA pseudouridine synthase B — —
Paraburkholderia graminis OAS925 0.68 ABIE53_002806 glutamine synthetase 0.38 ABIE53_001832 tRNA pseudouridine55 synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_00452 L-glutamine synthetase 0.37 H281DRAFT_05106 tRNA pseudouridine synthase B — —
Ralstonia solanacearum PSI07 0.68 RPSI07_RS17830 type I glutamate--ammonia ligase 0.38 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB — —
Cupriavidus basilensis FW507-4G11 0.68 RR42_RS12995 glutamine synthetase 0.38 RR42_RS12835 tRNA pseudouridine synthase B — —
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS15460 type I glutamate--ammonia ligase 0.31 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB low > 74
Ralstonia sp. UNC404CL21Col 0.67 ABZR87_RS11055 3-hydroxylaminophenol mutase 0.37 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB — —
Lysobacter sp. OAE881 0.67 ABIE51_RS01455 type I glutamate--ammonia ligase 0.35 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB — —
Variovorax sp. SCN45 0.67 GFF3069 Glutamine synthetase type I (EC 6.3.1.2) 0.35 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) — —
Xanthomonas campestris pv. campestris strain 8004 0.67 Xcc-8004.247.1 Glutamine synthetase type I (EC 6.3.1.2) 0.36 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) — —
Acinetobacter radioresistens SK82 0.67 MPMX26_00986 3-hydroxylaminophenol mutase 0.39 MPMX26_02778 tRNA pseudouridine synthase B — —
Rhodanobacter denitrificans MT42 0.67 LRK55_RS07855 type I glutamate--ammonia ligase 0.37 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB — —
Rhodanobacter sp. FW510-T8 0.67 OKGIIK_14920 glnA type I glutamate--ammonia ligase 0.37 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB — —
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS08105 type I glutamate--ammonia ligase 0.37 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB — —
Rhizobium sp. OAE497 0.67 ABIE40_RS09335 type I glutamate--ammonia ligase 0.28 ABIE40_RS00345 tRNA pseudouridine(55) synthase TruB low > 107
Sinorhizobium meliloti 1021 0.67 SMc00948 glutamine synthetase 0.29 SMc00321 tRNA pseudouridine synthase B low > 103
Agrobacterium fabrum C58 0.66 Atu1770 glutamine synthetase 0.27 Atu0085 tRNA pseudouridine 55 synthase low > 89
Rhodopseudomonas palustris CGA009 0.66 TX73_015390 type I glutamate--ammonia ligase 0.32 TX73_002255 tRNA pseudouridine(55) synthase TruB — —
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4429 Glutamine synthetase type I (EC 6.3.1.2) 0.35 Ac3H11_2865 tRNA pseudouridine synthase B (EC 4.2.1.70) — —
Dinoroseobacter shibae DFL-12 0.65 Dshi_1839 glutamine synthetase, type I (RefSeq) 0.30 Dshi_3042 tRNA pseudouridine synthase B (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.63 PGA1_c18720 glutamine synthetase GlnA 0.31 PGA1_c32950 tRNA pseudouridine synthase B — —
Rhodospirillum rubrum S1H 0.63 Rru_A2086 Glutamine synthetase type I (NCBI) 0.27 Rru_A3783 tRNA pseudouridine synthase B (NCBI) — —
Magnetospirillum magneticum AMB-1 0.63 AMB_RS03575 type I glutamate--ammonia ligase 0.29 AMB_RS20810 tRNA pseudouridine(55) synthase TruB — —
Caulobacter crescentus NA1000 Δfur 0.63 CCNA_02047 glutamine synthetase 0.28 CCNA_00035 tRNA pseudouridine synthase B — —
Caulobacter crescentus NA1000 0.63 CCNA_02047 glutamine synthetase 0.28 CCNA_00035 tRNA pseudouridine synthase B — —
Azospirillum sp. SherDot2 0.62 MPMX19_01555 3-hydroxylaminophenol mutase 0.31 MPMX19_02524 tRNA pseudouridine synthase B — —
Bosea sp. OAE506 0.62 ABIE41_RS16895 type I glutamate--ammonia ligase 0.30 ABIE41_RS04565 tRNA pseudouridine(55) synthase TruB — —
Brevundimonas sp. GW460-12-10-14-LB2 0.62 A4249_RS05670 type I glutamate--ammonia ligase 0.25 A4249_RS13345 tRNA pseudouridine(55) synthase TruB — —
Synechococcus elongatus PCC 7942 0.56 Synpcc7942_2156 glnA L-glutamine synthetase 0.21 Synpcc7942_1222 truB tRNA pseudouridine synthase B low > 38
Desulfovibrio vulgaris Hildenborough JW710 0.28 DVU3392 glnA glutamine synthetase, type I (TIGR) 0.22 DVU0505 truB tRNA pseudouridine synthase B (TIGR) low > 55

Not shown: 15 genomes with orthologs for GFF2222 only; 0 genomes with orthologs for GFF1500 only