Conservation of cofitness between GFF1806 and GFF1222 in Hydrogenophaga sp. GW460-11-11-14-LB1

80 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 1.0 GFF1222 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) 0.77 8
Variovorax sp. OAS795 0.70 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein 0.66 ABID97_RS07405 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 91
Variovorax sp. SCN45 0.69 GFF3627 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.68 GFF2573 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) low > 127
Acidovorax sp. GW101-3H11 0.67 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.69 Ac3H11_3860 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) — —
Dechlorosoma suillum PS 0.46 Dsui_0899 D-alanyl-D-alanine carboxypeptidase 0.41 Dsui_1277 glycerol-3-phosphate dehydrogenase — —
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS02415 cytochrome C550 0.44 BPHYT_RS02610 glycerol-3-phosphate dehydrogenase [NAD(P)+] low > 109
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 0.47 H281DRAFT_02000 glycerol-3-phosphate dehydrogenase (NAD(P)+) low > 103
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein 0.44 QEN71_RS01465 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 0.45 137
Paraburkholderia graminis OAS925 0.45 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) 0.44 ABIE53_000667 glycerol-3-phosphate dehydrogenase (NAD(P)+) low > 113
Castellaniella sp019104865 MT123 0.44 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein 0.41 ABCV34_RS14250 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 48
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS21530 cytochrome C550 0.46 HSERO_RS00795 glycerol-3-phosphate dehydrogenase low > 78
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS01680 cytochrome C550 0.43 RR42_RS01845 glycerol-3-phosphate dehydrogenase low > 128
Ralstonia solanacearum PSI07 0.42 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase 0.44 RPSI07_RS22390 glycerol-3-phosphate dehydrogenase low > 81
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein 0.39 ABZR86_RS13250 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein 0.44 ABZR87_RS06770 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 80
Ralstonia solanacearum GMI1000 0.41 RS_RS01610 D-alanyl-D-alanine carboxypeptidase 0.45 RS_RS01760 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) — —
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase 0.38 LRK54_RS10860 NAD(P)-dependent glycerol-3-phosphate dehydrogenase — —
Rhodanobacter denitrificans MT42 0.40 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein 0.38 LRK55_RS10550 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase 0.40 OKGIIK_13015 gpsA glycerol-3-phosphate dehydrogenase — —
Ralstonia solanacearum UW163 0.40 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase 0.45 UW163_RS02660 glycerol-3-phosphate dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase 0.45 RALBFv3_RS10920 glycerol-3-phosphate dehydrogenase low > 76
Pseudomonas stutzeri RCH2 0.39 Psest_0516 D-alanyl-D-alanine carboxypeptidase 0.32 Psest_2471 Glycerol-3-phosphate dehydrogenase — —
Lysobacter sp. OAE881 0.39 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein 0.40 ABIE51_RS00495 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Marinobacter adhaerens HP15 0.39 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase 0.33 HP15_1762 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase 0.39 B158DRAFT_0712 Glycerol-3-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.32 AO356_19795 glycerol-3-phosphate dehydrogenase low > 104
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.32 Pf6N2E2_5875 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) — —
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.33 PfGW456L13_2046 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) — —
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.33 AO353_01735 glycerol-3-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.29 Pf1N1B4_3518 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) — —
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.33 Psyr_2022 Glycerol-3-phosphate dehydrogenase (NAD(P)+) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.33 Psyr_2022 Glycerol-3-phosphate dehydrogenase (NAD(P)+) low > 86
Pseudomonas sp. RS175 0.37 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.32 PFR28_03076 Glycerol-3-phosphate dehydrogenase [NAD(P)+] — —
Pseudomonas fluorescens SBW25-INTG 0.37 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.33 PFLU_RS09055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.37 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.33 PFLU_RS09055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 109
Pseudomonas putida KT2440 0.37 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.32 PP_4169 Glycerol-3-phosphate dehydrogenase [NAD(P)+] — —
Pseudomonas simiae WCS417 0.37 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.33 PS417_09000 glycerol-3-phosphate dehydrogenase — —
Pseudomonas sp. S08-1 0.36 OH686_09300 D-alanyl-D-alanine carboxypeptidase 0.32 OH686_00475 Glycerol-3-phosphate dehydrogenase [NAD(P)+] 0.55 14
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.38 Xcc-8004.271.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) low > 74
Acinetobacter radioresistens SK82 0.36 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA 0.30 MPMX26_01116 Glycerol-3-phosphate dehydrogenase [NAD(P)+] — —
Azospirillum sp. SherDot2 0.36 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC 0.33 MPMX19_02123 Glycerol-3-phosphate dehydrogenase [NAD(P)+] — —
Escherichia coli ECRC100 0.35 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.34 OKFHMN_15755 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Azospirillum brasilense Sp245 0.35 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase 0.32 AZOBR_RS00325 glycerol-3-phosphate dehydrogenase — —
Escherichia coli Nissle 1917 0.35 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase 0.34 ECOLIN_RS20595 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Escherichia coli BW25113 0.35 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) 0.34 b3608 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (NCBI) — —
Escherichia coli ECRC102 0.35 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.34 NIAGMN_13515 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Escherichia coli ECRC101 0.35 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.34 MCAODC_06265 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.35 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC 0.34 OHPLBJKB_00091 Glycerol-3-phosphate dehydrogenase [NAD(P)+] — —
Escherichia coli ECRC98 0.35 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.34 JDDGAC_19380 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Escherichia coli ECRC99 0.35 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.34 KEDOAH_12395 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Escherichia coli BL21 0.35 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a 0.34 ECD_03466 glycerol-3-phosphate dehydrogenase (NAD+) — —
Escherichia coli ECOR27 0.35 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.34 NOLOHH_07635 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Escherichia coli ECOR38 0.35 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.34 HEPCGN_14595 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Escherichia coli ECRC62 0.35 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.34 BNILDI_03880 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Escherichia fergusonii Becca 0.35 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC 0.34 EFB2_00202 Glycerol-3-phosphate dehydrogenase [NAD(P)+] — —
Pectobacterium carotovorum WPP14 0.34 HER17_RS12545 serine hydrolase 0.35 HER17_RS20735 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 75
Vibrio cholerae E7946 ATCC 55056 0.34 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 0.34 CSW01_13405 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) — —
Dickeya dianthicola ME23 0.34 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase 0.35 DZA65_RS00850 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Enterobacter asburiae PDN3 0.34 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase 0.33 EX28DRAFT_3859 Glycerol-3-phosphate dehydrogenase — —
Dickeya dianthicola 67-19 0.34 HGI48_RS09435 serine hydrolase 0.35 HGI48_RS00795 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 71
Pantoea sp. MT58 0.34 IAI47_14040 D-alanyl-D-alanine carboxypeptidase DacA 0.33 IAI47_00740 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Alteromonas macleodii MIT1002 0.33 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor 0.38 MIT1002_00485 Glycerol-3-phosphate dehydrogenase [NAD(P)+] — —
Enterobacter sp. TBS_079 0.33 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC 0.33 MPMX20_00125 Glycerol-3-phosphate dehydrogenase [NAD(P)+] — —
Shewanella loihica PV-4 0.33 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.35 Shew_3803 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq) — —
Dickeya dadantii 3937 0.33 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA 0.35 DDA3937_RS20405 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Rahnella sp. WP5 0.33 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA 0.33 EX31_RS14340 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.34 GFF402 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) — —
Klebsiella michiganensis M5al 0.33 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase 0.33 BWI76_RS27210 glycerol-3-phosphate dehydrogenase — —
Erwinia tracheiphila SCR3 0.33 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.33 LU632_RS21875 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 74
Serratia liquefaciens MT49 0.32 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA 0.36 IAI46_24690 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 86
Rhodospirillum rubrum S1H 0.32 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) 0.34 Rru_A3571 Glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI) — —
Shewanella sp. ANA-3 0.32 Shewana3_0991 penicillin-binding protein 6 (RefSeq) 0.34 Shewana3_0054 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq) — —
Shewanella oneidensis MR-1 0.32 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) 0.35 SO0053 gpsA glycerol-3-phosphate dehydrogenase (NAD(P)+) (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.32 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.35 Sama_0063 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase (RefSeq) — —
Dinoroseobacter shibae DFL-12 0.30 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.33 Dshi_3414 NAD-dependent glycerol-3-phosphate dehydrogenase domain protein (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.29 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase 0.34 Ga0059261_2234 Glycerol-3-phosphate dehydrogenase — —
Phaeobacter inhibens DSM 17395 0.29 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC 0.32 PGA1_c35480 glycerol-3-phosphate dehydrogenase GpsA — —
Bosea sp. OAE506 0.26 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein 0.26 ABIE41_RS05655 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Rhizobium sp. OAE497 0.25 ABIE40_RS09505 D-alanyl-D-alanine carboxypeptidase family protein 0.28 ABIE40_RS18055 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase low > 107
Sinorhizobium meliloti 1021 0.24 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein 0.29 SMc03229 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase — —
Agrobacterium fabrum C58 0.23 Atu1499 penicillin binding protein 0.29 Atu2650 glycerol-3-phosphate dehydrogenase low > 89

Not shown: 1 genomes with orthologs for GFF1806 only; 19 genomes with orthologs for GFF1222 only