| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF4044 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 1.0 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.82 | 2 |
| Acidovorax sp. GW101-3H11 | 0.86 | Ac3H11_937 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.69 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 79 |
| Variovorax sp. OAS795 | 0.83 | ABID97_RS17590 | | endopeptidase La | 0.67 | ABID97_RS08250 | | RluA family pseudouridine synthase | low | > 91 |
| Variovorax sp. SCN45 | 0.82 | GFF487 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.67 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | low | > 127 |
| Ralstonia sp. UNC404CL21Col | 0.77 | ABZR87_RS12785 | | endopeptidase La | 0.51 | ABZR87_RS10090 | | RluA family pseudouridine synthase | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.77 | QEN71_RS21975 | | endopeptidase La | 0.53 | QEN71_RS04500 | | RluA family pseudouridine synthase | 0.59 | 93 |
| Ralstonia solanacearum PSI07 | 0.77 | RPSI07_RS16135 | | endopeptidase La | 0.48 | RPSI07_RS19085 | | RluA family pseudouridine synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.76 | RALBFv3_RS01340 | | endopeptidase La | 0.50 | RALBFv3_RS14375 | | RluA family pseudouridine synthase | — | — |
| Ralstonia solanacearum UW163 | 0.76 | UW163_RS14650 | | endopeptidase La | 0.50 | UW163_RS11840 | | RluA family pseudouridine synthase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.76 | H281DRAFT_00898 | | ATP-dependent proteinase. Serine peptidase. MEROPS family S16 | 0.54 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | — | — |
| Ralstonia solanacearum GMI1000 | 0.76 | RS_RS08655 | | endopeptidase La | 0.49 | RS_RS05155 | | RluA family pseudouridine synthase | — | — |
| Burkholderia phytofirmans PsJN | 0.76 | BPHYT_RS09460 | | peptidase | 0.54 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Herbaspirillum seropedicae SmR1 | 0.76 | HSERO_RS12905 | | peptidase | 0.51 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.76 | RR42_RS09030 | | DNA-binding protein | 0.49 | RR42_RS14155 | | pseudouridine synthase | — | — |
| Castellaniella sp019104865 MT123 | 0.74 | ABCV34_RS05125 | | endopeptidase La | 0.47 | ABCV34_RS08415 | | RluA family pseudouridine synthase | — | — |
| Paraburkholderia graminis OAS925 | 0.74 | ABIE53_002117 | | ATP-dependent Lon protease | 0.54 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | low | > 113 |
| Dechlorosoma suillum PS | 0.72 | Dsui_2198 | | ATP-dependent protease La | 0.52 | Dsui_2437 | | pseudouridine synthase, RluA family | low | > 51 |
| Klebsiella michiganensis M5al | 0.66 | BWI76_RS06535 | | endopeptidase La | 0.43 | BWI76_RS11050 | | 23S rRNA pseudouridine(955/2504/2580) synthase | low | > 92 |
| Dickeya dadantii 3937 | 0.66 | DDA3937_RS05650 | | endopeptidase La | 0.41 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.66 | HER17_RS15840 | | endopeptidase La | 0.43 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Dickeya dianthicola 67-19 | 0.66 | HGI48_RS05695 | | endopeptidase La | 0.42 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 71 |
| Dickeya dianthicola ME23 | 0.66 | DZA65_RS06020 | | endopeptidase La | 0.42 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.66 | LU632_RS18335 | lon | endopeptidase La | 0.45 | LU632_RS14855 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Shewanella loihica PV-4 | 0.66 | Shew_2506 | | ATP-dependent protease La (RefSeq) | 0.44 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | — | — |
| Shewanella sp. ANA-3 | 0.65 | Shewana3_2659 | | Lon-A peptidase (RefSeq) | 0.43 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.65 | GFF4355 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.42 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 78 |
| Enterobacter sp. TBS_079 | 0.65 | MPMX20_01030 | | Lon protease | 0.43 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | low | > 85 |
| Escherichia coli ECRC98 | 0.65 | JDDGAC_11975 | | Lon protease | 0.42 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli ECRC101 | 0.65 | OKFHMN_08320 | | Lon protease | 0.42 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Serratia liquefaciens MT49 | 0.65 | IAI46_05020 | | endopeptidase La | 0.42 | IAI46_09755 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 86 |
| Escherichia coli ECRC102 | 0.65 | NIAGMN_06375 | | Lon protease | 0.42 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli ECRC101 | 0.65 | MCAODC_27545 | | Lon protease | 0.42 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Enterobacter asburiae PDN3 | 0.65 | EX28DRAFT_2531 | | endopeptidase La | 0.44 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | low | > 76 |
| Escherichia coli ECRC99 | 0.65 | KEDOAH_19645 | | Lon protease | 0.42 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Pseudomonas sp. RS175 | 0.65 | PFR28_01230 | | Lon protease | 0.39 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | low | > 88 |
| Pseudomonas fluorescens FW300-N2C3 | 0.65 | AO356_01740 | | DNA-binding protein | 0.39 | AO356_20125 | | 23S rRNA pseudouridylate synthase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.65 | Pf6N2E2_2216 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.39 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | — | — |
| Escherichia coli Nissle 1917 | 0.65 | ECOLIN_RS02635 | | endopeptidase La | 0.42 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 52 |
| Escherichia coli BL21 | 0.65 | ECD_00391 | | DNA-binding ATP-dependent protease La | 0.42 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | low | > 60 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.65 | OHPLBJKB_03234 | | Lon protease | 0.42 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | 0.55 | 32 |
| Escherichia coli ECOR38 | 0.65 | HEPCGN_06935 | lon_P403L | Lon protease | 0.42 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.94 | 16 |
| Escherichia coli BW25113 | 0.65 | b0439 | lon | DNA-binding ATP-dependent protease La (NCBI) | 0.42 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.65 | BNILDI_22670 | lon_P403L | Lon protease | 0.42 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Escherichia coli ECOR27 | 0.65 | NOLOHH_01255 | lon_P403L | Lon protease | 0.42 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 57 |
| Alteromonas macleodii MIT1002 | 0.65 | MIT1002_02757 | | Lon protease | 0.40 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | low | > 70 |
| Escherichia fergusonii Becca | 0.65 | EFB2_03618 | | Lon protease | 0.42 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Vibrio cholerae E7946 ATCC 55056 | 0.65 | CSW01_09605 | | endopeptidase La | 0.40 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 62 |
| Pseudomonas fluorescens GW456-L13 | 0.65 | PfGW456L13_2554 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.39 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.65 | PFLU_RS19160 | | endopeptidase La | 0.39 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.27 | 102 |
| Pseudomonas simiae WCS417 | 0.65 | PS417_17225 | | DNA-binding protein | 0.39 | PS417_21480 | | 23S rRNA pseudouridylate synthase | — | — |
| Pseudomonas fluorescens SBW25 | 0.65 | PFLU_RS19160 | | endopeptidase La | 0.39 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.66 | 60 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.65 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | 0.40 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.65 | Psyr_1749 | | ATP-dependent proteinase, Serine peptidase, MEROPS family S16 | 0.40 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.65 | Pf1N1B4_3947 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.38 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | — | — |
| Pantoea sp. MT58 | 0.65 | IAI47_14645 | | endopeptidase La | 0.45 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.65 | AO353_20185 | | DNA-binding protein | 0.40 | AO353_01405 | | 23S rRNA pseudouridylate synthase | low | > 101 |
| Kangiella aquimarina DSM 16071 | 0.65 | B158DRAFT_1038 | | ATP-dependent protease La | 0.40 | B158DRAFT_1770 | | ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) | low | > 40 |
| Rahnella sp. WP5 | 0.65 | EX31_RS22255 | | endopeptidase La | 0.43 | EX31_RS24400 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | low | > 89 |
| Shewanella amazonensis SB2B | 0.65 | Sama_1226 | | endopeptidase La (RefSeq) | 0.42 | Sama_1988 | | pseudouridylate synthase (RefSeq) | low | > 62 |
| Pseudomonas stutzeri RCH2 | 0.64 | Psest_2285 | | ATP-dependent protease La | 0.39 | Psest_1680 | | pseudouridine synthase, RluA family | — | — |
| Pseudomonas putida KT2440 | 0.64 | PP_2302 | | DNA-binding, ATP-dependent protease | 0.40 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | low | > 96 |
| Marinobacter adhaerens HP15 | 0.63 | HP15_2183 | | DNA-binding ATP-dependent protease La | 0.44 | HP15_2221 | | pseudouridine synthase, RluA family | low | > 73 |
| Pseudomonas sp. S08-1 | 0.63 | OH686_03635 | | endopeptidase La | 0.40 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | low | > 80 |
| Magnetospirillum magneticum AMB-1 | 0.63 | AMB_RS14035 | | endopeptidase La | 0.21 | AMB_RS15620 | | RluA family pseudouridine synthase | low | > 64 |
| Lysobacter sp. OAE881 | 0.63 | ABIE51_RS14145 | | endopeptidase La | 0.38 | ABIE51_RS11800 | | RluA family pseudouridine synthase | low | > 62 |
| Azospirillum sp. SherDot2 | 0.63 | MPMX19_01545 | | Lon protease | 0.20 | MPMX19_01718 | | Ribosomal large subunit pseudouridine synthase C | low | > 112 |
| Rhodospirillum rubrum S1H | 0.62 | Rru_A1552 | | Peptidase S16, ATP-dependent protease La (NCBI) | 0.20 | Rru_A2659 | | Pseudouridine synthase, RluD (NCBI) | — | — |
| Azospirillum brasilense Sp245 | 0.62 | AZOBR_RS07145 | | peptidase | 0.20 | AZOBR_RS06905 | | pseudouridine synthase | low | > 97 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.62 | Xcc-8004.4046.1 | | ATP-dependent protease La (EC 3.4.21.53) Type I | 0.38 | Xcc-8004.2616.1 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.62 | ABZR86_RS07320 | | endopeptidase La | 0.34 | ABZR86_RS02725 | | RluA family pseudouridine synthase | 0.58 | 73 |
| Rhodanobacter denitrificans MT42 | 0.61 | LRK55_RS16460 | | endopeptidase La | 0.38 | LRK55_RS17750 | | RluA family pseudouridine synthase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.61 | LRK54_RS16735 | | endopeptidase La | 0.38 | LRK54_RS17895 | | RluA family pseudouridine synthase | low | > 59 |
| Rhodanobacter sp. FW510-T8 | 0.60 | OKGIIK_08030 | lon | endopeptidase La | 0.38 | OKGIIK_07405 | rluA | 23S rRNA pseudouridine(955/2504/2580) synthase | low | > 52 |
| Caulobacter crescentus NA1000 Δfur | 0.60 | CCNA_02037 | | ATP-dependent endopeptidase Lon | 0.21 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Caulobacter crescentus NA1000 | 0.60 | CCNA_02037 | | ATP-dependent endopeptidase Lon | 0.21 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | low | > 66 |
| Agrobacterium fabrum C58 | 0.60 | Atu1261 | | ATP-dependent protease LA | 0.24 | Atu1471 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Rhizobium sp. OAE497 | 0.59 | ABIE40_RS07100 | | endopeptidase La | 0.24 | ABIE40_RS09915 | | RluA family pseudouridine synthase | — | — |
| Sinorhizobium meliloti 1021 | 0.59 | SMc01905 | | ATP-dependent protease LA protein | 0.24 | SMc01275 | | ribosomal large subunit pseudouridine synthase C protein | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.59 | A4249_RS06460 | | endopeptidase La | 0.21 | A4249_RS07865 | | RluA family pseudouridine synthase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.58 | PGA1_c20540 | | ATP-dependent protease La | 0.24 | PGA1_c01950 | | ribosomal large subunit pseudouridine synthase C | — | — |
| Dinoroseobacter shibae DFL-12 | 0.56 | Dshi_1777 | | ATP-dependent protease La (RefSeq) | 0.20 | Dshi_0315 | | pseudouridine synthase, RluA family (RefSeq) | low | > 64 |
| Acinetobacter radioresistens SK82 | 0.53 | MPMX26_02299 | | Lon protease | 0.36 | MPMX26_00317 | | Ribosomal large subunit pseudouridine synthase C | low | > 36 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.51 | DVU1337 | lon | ATP-dependent protease La (TIGR) | 0.21 | DVU3191 | rluC | ribosomal large subunit pseudouridine synthase C (TIGR) | low | > 55 |
| Fusobacterium nucleatum SB010 | 0.41 | HUW76_01065 | | endopeptidase La | 0.20 | HUW76_04985 | | RluA family pseudouridine synthase | low | > 35 |
Not shown: 14 genomes with orthologs for GFF4044 only; 0 genomes with orthologs for GFF121 only