| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | 1.0 | ECD_02202 | | NADH:ubiquinone oxidoreductase, membrane subunit M | 0.54 | 8 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | OHPLBJKB_01429 | | NADH-quinone oxidoreductase subunit M | low | > 73 |
| Escherichia coli BW25113 | 1.00 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | 1.00 | b2277 | nuoM | NADH dehydrogenase subunit M (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.99 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | BNILDI_13435 | nuoM | NADH-quinone oxidoreductase subunit M | low | > 75 |
| Escherichia coli ECOR27 | 0.99 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | NOLOHH_14515 | nuoM | NADH-quinone oxidoreductase subunit M | low | > 75 |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | ECOLIN_RS13230 | | NADH-quinone oxidoreductase subunit M | low | > 55 |
| Escherichia coli ECRC101 | 0.99 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | MCAODC_13935 | nuoM | NADH-quinone oxidoreductase subunit M | low | > 87 |
| Escherichia coli ECRC99 | 0.99 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | KEDOAH_05300 | nuoM | NADH-quinone oxidoreductase subunit M | — | — |
| Escherichia coli ECRC100 | 0.99 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | OKFHMN_22895 | nuoM | NADH-quinone oxidoreductase subunit M | low | > 80 |
| Escherichia coli ECRC98 | 0.99 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | JDDGAC_26860 | nuoM | NADH-quinone oxidoreductase subunit M | low | > 86 |
| Escherichia coli ECRC102 | 0.99 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | NIAGMN_20665 | nuoM | NADH-quinone oxidoreductase subunit M | — | — |
| Escherichia coli ECOR38 | 0.98 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | HEPCGN_22100 | nuoM | NADH-quinone oxidoreductase subunit M | low | > 87 |
| Escherichia fergusonii Becca | 0.98 | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | EFB2_01582 | | NADH-quinone oxidoreductase subunit M | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.85 | GFF4838 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.96 | GFF1880 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.80 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.94 | EX28DRAFT_0333 | | proton-translocating NADH-quinone oxidoreductase, chain M | low | > 76 |
| Enterobacter sp. TBS_079 | 0.80 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.94 | MPMX20_03207 | | NADH-quinone oxidoreductase subunit M | low | > 85 |
| Klebsiella michiganensis M5al | 0.79 | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | 0.93 | BWI76_RS20135 | | NADH-quinone oxidoreductase subunit M | low | > 92 |
| Dickeya dianthicola ME23 | 0.66 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.83 | DZA65_RS14930 | | NADH-quinone oxidoreductase subunit M | — | — |
| Dickeya dianthicola 67-19 | 0.66 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.83 | HGI48_RS14255 | | NADH-quinone oxidoreductase subunit M | low | > 71 |
| Dickeya dadantii 3937 | 0.65 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.83 | DDA3937_RS14280 | | NADH-quinone oxidoreductase subunit M | — | — |
| Pectobacterium carotovorum WPP14 | 0.64 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.86 | HER17_RS07180 | | NADH-quinone oxidoreductase subunit M | low | > 75 |
| Pantoea sp. MT58 | 0.64 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.87 | IAI47_06415 | | NADH-quinone oxidoreductase subunit M | low | > 76 |
| Serratia liquefaciens MT49 | 0.63 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.88 | IAI46_17655 | | NADH-quinone oxidoreductase subunit M | low | > 86 |
| Rahnella sp. WP5 | 0.62 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.87 | EX31_RS19380 | | NADH-quinone oxidoreductase subunit M | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.59 | LU632_RS06345 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.85 | LU632_RS08020 | nuoM | NADH-quinone oxidoreductase subunit M | low | > 74 |
| Shewanella oneidensis MR-1 | 0.43 | SO3456 | | RNA methyltransferase, TrmA family (NCBI ptt file) | 0.70 | SO1010 | nuoM | NADH dehydrogenase I, M subunit (NCBI ptt file) | low | > 76 |
| Kangiella aquimarina DSM 16071 | 0.37 | B158DRAFT_2275 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.30 | B158DRAFT_0115 | | NADH dehydrogenase subunit M (EC 1.6.5.3) | low | > 40 |
| Pseudomonas stutzeri RCH2 | 0.36 | Psest_1639 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.12 | Psest_4369 | | Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit | low | > 67 |
| Lysobacter sp. OAE881 | 0.36 | ABIE51_RS13830 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.30 | ABIE51_RS08370 | | NADH-quinone oxidoreductase subunit M | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.35 | ABZR86_RS07120 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.29 | ABZR86_RS06055 | | NADH-quinone oxidoreductase subunit M | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.35 | Xcc-8004.3669.1 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.30 | Xcc-8004.1995.1 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | — | — |
| Castellaniella sp019104865 MT123 | 0.35 | ABCV34_RS03050 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.28 | ABCV34_RS08690 | | NADH-quinone oxidoreductase subunit M | — | — |
| Rhodanobacter denitrificans MT42 | 0.35 | LRK55_RS16715 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.29 | LRK55_RS00845 | | NADH-quinone oxidoreductase subunit M | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.35 | LRK54_RS17000 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.29 | LRK54_RS01070 | | NADH-quinone oxidoreductase subunit M | — | — |
| Acinetobacter radioresistens SK82 | 0.34 | MPMX26_00538 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.60 | MPMX26_02544 | | NADH-quinone oxidoreductase subunit M | — | — |
| Rhodanobacter sp. FW510-T8 | 0.34 | OKGIIK_07840 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.29 | OKGIIK_05825 | nuoM | NADH-quinone oxidoreductase subunit M | — | — |
| Pseudomonas simiae WCS417 | 0.34 | PS417_20155 | | 23S rRNA methyltransferase | 0.68 | PS417_16630 | | NADH:ubiquinone oxidoreductase subunit M | — | — |
| Pseudomonas sp. S08-1 | 0.33 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.71 | OH686_00100 | | NADH-ubiquinone oxidoreductase chain M | low | > 80 |
| Pseudomonas fluorescens SBW25-INTG | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.68 | PFLU_RS18670 | | NADH-quinone oxidoreductase subunit M | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.68 | PFLU_RS18670 | | NADH-quinone oxidoreductase subunit M | low | > 109 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.32 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.66 | Psyr_3208 | | NADH dehydrogenase subunit M | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.32 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.66 | Psyr_3208 | | NADH dehydrogenase subunit M | low | > 86 |
| Pseudomonas sp. RS175 | 0.32 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.67 | PFR28_02638 | | NADH-quinone oxidoreductase subunit M | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.32 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.67 | Pf1N1B4_4029 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | low | > 87 |
| Dechlorosoma suillum PS | 0.32 | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.29 | Dsui_3038 | | proton-translocating NADH-quinone oxidoreductase, chain M | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_19055 | | 23S rRNA methyltransferase | 0.68 | AO356_22015 | | NADH:ubiquinone oxidoreductase subunit M | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.67 | Pf6N2E2_266 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | — | — |
| Ralstonia sp. UNC404CL21Col | 0.31 | ABZR87_RS10885 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.30 | ABZR87_RS14820 | | NADH-quinone oxidoreductase subunit M | — | — |
| Acidovorax sp. GW101-3H11 | 0.31 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.29 | Ac3H11_1440 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | — | — |
| Herbaspirillum seropedicae SmR1 | 0.31 | HSERO_RS14825 | | 23S rRNA methyltransferase | 0.27 | HSERO_RS08880 | | NADH:ubiquinone oxidoreductase subunit M | — | — |
| Burkholderia phytofirmans PsJN | 0.31 | BPHYT_RS09125 | | 23S rRNA methyltransferase | 0.30 | BPHYT_RS06685 | | NADH:ubiquinone oxidoreductase subunit M | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.31 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | 0.31 | H281DRAFT_04579 | | NADH dehydrogenase subunit M | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.31 | RR42_RS13170 | | 23S rRNA methyltransferase | 0.30 | RR42_RS05570 | | NADH:ubiquinone oxidoreductase subunit M | — | — |
| Ralstonia solanacearum GMI1000 | 0.31 | RS_RS06055 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.31 | RS_RS10285 | | NADH-quinone oxidoreductase subunit M | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.30 | RALBFv3_RS15245 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.31 | RALBFv3_RS02915 | | NADH-quinone oxidoreductase subunit M | — | — |
| Pseudomonas putida KT2440 | 0.30 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.66 | PP_4130 | | NADH:ubiquinone oxidoreductase, membrane subunit M | low | > 96 |
| Pseudomonas fluorescens FW300-N2E3 | 0.30 | AO353_02715 | | 23S rRNA methyltransferase | 0.69 | AO353_27795 | | NADH:ubiquinone oxidoreductase subunit M | — | — |
| Ralstonia solanacearum UW163 | 0.30 | UW163_RS12710 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.31 | UW163_RS10810 | | NADH-quinone oxidoreductase subunit M | — | — |
| Ralstonia solanacearum PSI07 | 0.30 | RPSI07_RS18130 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.31 | RPSI07_RS14395 | | NADH-quinone oxidoreductase subunit M | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.30 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.69 | PfGW456L13_2622 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.30 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.29 | GFF3693 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.29 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.31 | QEN71_RS24090 | | NADH-quinone oxidoreductase subunit M | 0.39 | 138 |
| Variovorax sp. SCN45 | 0.28 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | 0.28 | GFF4762 | | NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) | — | — |
| Synechococcus elongatus PCC 7942 | 0.21 | Synpcc7942_0241 | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.29 | Synpcc7942_1976 | ndhD | NAD(P)H-quinone oxidoreductase subunit D | low | > 38 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.19 | CA264_02005 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.48 | CA264_04215 | | NADH-quinone oxidoreductase subunit M | low | > 74 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.19 | ABZR88_RS21250 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.26 | ABZR88_RS15725 | | NuoM family protein | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.19 | CA265_RS25340 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.26 | CA265_RS23595 | | NADH-quinone oxidoreductase subunit M | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.19 | HMPREF1058_RS03720 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.21 | HMPREF1058_RS13295 | | NADH-quinone oxidoreductase subunit M | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.18 | ABI39_RS17490 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.21 | ABI39_RS08500 | | NADH-quinone oxidoreductase subunit M | low | > 72 |
| Bacteroides ovatus ATCC 8483 | 0.18 | BACOVA_02267 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.21 | BACOVA_04854 | | proton-translocating NADH-quinone oxidoreductase, chain M | low | > 94 |
| Magnetospirillum magneticum AMB-1 | 0.17 | AMB_RS01660 | | class I SAM-dependent RNA methyltransferase | 0.29 | AMB_RS13950 | | NADH-quinone oxidoreductase subunit M | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.17 | BT0643 | | RNA methyltransferase (NCBI ptt file) | 0.21 | BT4059 | | NADH dehydrogenase I, chain M (NCBI ptt file) | low | > 81 |
| Azospirillum brasilense Sp245 | 0.16 | AZOBR_RS01195 | | RNA methyltransferase | 0.32 | AZOBR_RS07225 | | NADH:ubiquinone oxidoreductase subunit M | — | — |
| Caulobacter crescentus NA1000 | 0.16 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | 0.32 | CCNA_02016 | | NADH-quinone oxidoreductase chain M | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.16 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | 0.32 | CCNA_02016 | | NADH-quinone oxidoreductase chain M | — | — |
| Azospirillum sp. SherDot2 | 0.16 | MPMX19_02196 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.31 | MPMX19_01734 | | NADH-quinone oxidoreductase subunit M | — | — |
| Rhodopseudomonas palustris CGA009 | 0.15 | TX73_004885 | | methyltransferase | 0.33 | TX73_022035 | | NADH-quinone oxidoreductase subunit M | 0.23 | 29 |
| Rhizobium sp. OAE497 | 0.15 | ABIE40_RS03880 | | class I SAM-dependent RNA methyltransferase | 0.30 | ABIE40_RS07245 | | NADH-quinone oxidoreductase subunit M | — | — |
| Dinoroseobacter shibae DFL-12 | 0.15 | Dshi_3492 | | (Uracil-5)-methyltransferase (RefSeq) | 0.31 | Dshi_1328 | | proton-translocating NADH-quinone oxidoreductase, chain M (RefSeq) | — | — |
| Sinorhizobium meliloti 1021 | 0.14 | SMc00974 | | RNA methyltransferase | 0.31 | SMc01926 | | NADH dehydrogenase subunit M | — | — |
| Agrobacterium fabrum C58 | 0.14 | Atu0735 | | RNA methyltransferase | 0.30 | Atu1282 | | NADH dehydrogenase I chain M | — | — |
| Phaeobacter inhibens DSM 17395 | 0.14 | PGA1_c34810 | | putative RNA methyltransferase | 0.30 | PGA1_c10540 | | NADH-quinone oxidoreductase subunit M | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.14 | Ga0059261_0648 | | SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase | 0.28 | Ga0059261_0697 | | proton-translocating NADH-quinone oxidoreductase, chain M | — | — |
| Bosea sp. OAE506 | 0.14 | ABIE41_RS22255 | | RNA methyltransferase | 0.28 | ABIE41_RS17880 | | NADH-quinone oxidoreductase subunit M | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.13 | A4249_RS08425 | | class I SAM-dependent RNA methyltransferase | 0.33 | A4249_RS06345 | | NADH-quinone oxidoreductase subunit M | — | — |
| Rhodospirillum rubrum S1H | 0.12 | Rru_A2107 | | 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) | 0.32 | Rru_A1567 | | Proton-translocating NADH-quinone oxidoreductase, chain M (NCBI) | — | — |
Not shown: 11 genomes with orthologs for ECD_02630 only; 4 genomes with orthologs for ECD_02202 only