| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Dechlorosoma suillum PS | 1.0 | Dsui_1234 | | putative Zn-dependent protease-like protein | 1.0 | Dsui_1810 | | DNA-binding protein, YbaB/EbfC family | 0.87 | 3 |
| Ralstonia solanacearum UW163 | 0.56 | UW163_RS15845 | | metalloprotease PmbA | 0.70 | UW163_RS12630 | | nucleoid-associated protein, YbaB/EbfC family | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.56 | RALBFv3_RS13965 | | metalloprotease PmbA | 0.70 | RALBFv3_RS15160 | | nucleoid-associated protein, YbaB/EbfC family | — | — |
| Paraburkholderia graminis OAS925 | 0.56 | ABIE53_003116 | | PmbA protein | 0.76 | ABIE53_002047 | | DNA-binding YbaB/EbfC family protein | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_04304 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.75 | H281DRAFT_00833 | | hypothetical protein | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.56 | QEN71_RS04270 | | metalloprotease PmbA | 0.76 | QEN71_RS22290 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Ralstonia sp. UNC404CL21Col | 0.55 | ABZR87_RS09660 | | metalloprotease PmbA | 0.70 | ABZR87_RS10800 | | YbaB/EbfC family nucleoid-associated protein | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.55 | RPSI07_RS19505 | | metalloprotease PmbA | 0.69 | RPSI07_RS18215 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Herbaspirillum seropedicae SmR1 | 0.55 | HSERO_RS09265 | | peptidase C69 | 0.75 | HSERO_RS18365 | | hypothetical protein | low | > 78 |
| Burkholderia phytofirmans PsJN | 0.55 | BPHYT_RS14705 | | peptidase C69 | 0.75 | BPHYT_RS09060 | | hypothetical protein | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.54 | RR42_RS14750 | | peptidase PMbA | 0.73 | RR42_RS13280 | | hypothetical protein | — | — |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS04700 | | metalloprotease PmbA | 0.70 | RS_RS05975 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Acidovorax sp. GW101-3H11 | 0.51 | Ac3H11_3262 | | TldE protein, part of TldE/TldD proteolytic complex | 0.64 | Ac3H11_472 | | FIG000557: hypothetical protein co-occurring with RecR | — | — |
| Castellaniella sp019104865 MT123 | 0.50 | ABCV34_RS10610 | | metalloprotease PmbA | 0.67 | ABCV34_RS15475 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Variovorax sp. OAS795 | 0.50 | ABID97_RS20695 | | metalloprotease PmbA | 0.69 | ABID97_RS14695 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Variovorax sp. SCN45 | 0.50 | GFF4697 | | TldE protein, part of TldE/TldD proteolytic complex | 0.69 | GFF1109 | | Nucleoid-associated protein YaaK | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.49 | GFF3655 | | TldE protein, part of TldE/TldD proteolytic complex | 0.65 | GFF4252 | | FIG000557: hypothetical protein co-occurring with RecR | low | > 90 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_3278 | | TldE protein, part of TldE/TldD proteolytic complex | 0.66 | Pf6N2E2_2327 | | FIG000557: hypothetical protein co-occurring with RecR | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_07085 | | peptidase PmbA | 0.66 | AO356_02505 | | nucleoid-associated protein | — | — |
| Pseudomonas putida KT2440 | 0.48 | PP_0942 | | regulatory protease | 0.70 | PP_4268 | | nucleoid-associated broad specificity regulator | low | > 96 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_00163 | | Metalloprotease PmbA | 0.67 | PFR28_01075 | | Nucleoid-associated protein YbaB | — | — |
| Pseudomonas simiae WCS417 | 0.47 | PS417_04295 | | peptidase PmbA | 0.65 | PS417_20810 | | hypothetical protein | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.66 | Psyr_1826 | | Conserved hypothetical protein 103 | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_4154 | | microcin-processing peptidase 1, Unknown type peptidase, MEROPS family U62 | 0.66 | Psyr_1826 | | Conserved hypothetical protein 103 | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS04350 | | metalloprotease PmbA | 0.65 | PFLU_RS22425 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS04350 | | metalloprotease PmbA | 0.65 | PFLU_RS22425 | | YbaB/EbfC family nucleoid-associated protein | low | > 109 |
| Pseudomonas fluorescens FW300-N1B4 | 0.47 | Pf1N1B4_1090 | | TldE protein, part of TldE/TldD proteolytic complex | 0.66 | Pf1N1B4_3863 | | FIG000557: hypothetical protein co-occurring with RecR | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_5024 | | TldE protein, part of TldE/TldD proteolytic complex | 0.64 | PfGW456L13_4076 | | FIG000557: hypothetical protein co-occurring with RecR | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_05205 | | peptidase PmbA | 0.66 | AO353_00680 | | nucleoid-associated protein | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.45 | ABZR86_RS21700 | | metalloprotease PmbA | 0.59 | ABZR86_RS06240 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Pseudomonas stutzeri RCH2 | 0.45 | Psest_3318 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.69 | Psest_2546 | | DNA-binding protein, YbaB/EbfC family | — | — |
| Pseudomonas sp. S08-1 | 0.45 | OH686_08570 | | TldE protein, part of TldE/TldD proteolytic complex | 0.71 | OH686_02390 | | DNA-binding protein, YbaB/EbfC family | — | — |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_10260 | pmbA | metalloprotease PmbA | 0.59 | OKGIIK_05650 | ybaB | YbaB/EbfC family nucleoid-associated protein | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS03125 | | metalloprotease PmbA | 0.61 | LRK55_RS01025 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS03375 | | metalloprotease PmbA | 0.60 | LRK54_RS01255 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Shewanella amazonensis SB2B | 0.44 | Sama_0482 | | PmbA protein (RefSeq) | 0.62 | Sama_1311 | | hypothetical protein (RefSeq) | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.43 | CSW01_12845 | | metalloprotease PmbA | 0.65 | CSW01_05370 | | YbaB/EbfC family nucleoid-associated protein | low | > 62 |
| Serratia liquefaciens MT49 | 0.43 | IAI46_22575 | | metalloprotease PmbA | 0.50 | IAI46_05235 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli BL21 | 0.43 | ECD_04103 | | putative antibiotic peptide MccB17 maturation peptidase | 0.64 | ECD_00422 | | DNA-binding protein, putative nucleoid-associated protein | — | — |
| Rahnella sp. WP5 | 0.43 | EX31_RS12320 | | metalloprotease PmbA | 0.64 | EX31_RS22520 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli ECRC101 | 0.43 | MCAODC_02430 | pmbA | metalloprotease PmbA | 0.64 | MCAODC_27385 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.43 | OHPLBJKB_03800 | | Metalloprotease PmbA | 0.64 | OHPLBJKB_03203 | | Nucleoid-associated protein YbaB | — | — |
| Escherichia coli ECRC98 | 0.43 | JDDGAC_15565 | pmbA | metalloprotease PmbA | 0.64 | JDDGAC_11810 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli ECOR38 | 0.43 | HEPCGN_10125 | pmbA | metalloprotease PmbA | 0.64 | HEPCGN_06775 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.43 | GFF904 | | TldE protein, part of TldE/TldD proteolytic complex | 0.64 | GFF4389 | | FIG000557: hypothetical protein co-occurring with RecR | — | — |
| Escherichia coli ECRC99 | 0.43 | KEDOAH_16230 | pmbA | metalloprotease PmbA | 0.64 | KEDOAH_19805 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli ECOR27 | 0.43 | NOLOHH_04185 | pmbA | metalloprotease PmbA | 0.64 | NOLOHH_01090 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli BW25113 | 0.43 | b4235 | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 (NCBI) | 0.64 | b0471 | ybaB | hypothetical protein (NCBI) | low | > 76 |
| Escherichia coli ECRC102 | 0.43 | NIAGMN_09775 | pmbA | metalloprotease PmbA | 0.64 | NIAGMN_06215 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli ECRC62 | 0.43 | BNILDI_07325 | pmbA | metalloprotease PmbA | 0.64 | BNILDI_22510 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Escherichia coli ECRC101 | 0.43 | OKFHMN_11925 | pmbA | metalloprotease PmbA | 0.64 | OKFHMN_08160 | ybaB | YbaB/EbfC family nucleoid-associated protein | — | — |
| Pectobacterium carotovorum WPP14 | 0.43 | HER17_RS20090 | | metalloprotease PmbA | 0.51 | HER17_RS15700 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.1885.1 | | TldE protein, part of TldE/TldD proteolytic complex | 0.60 | Xcc-8004.4013.1 | | FIG000557: hypothetical protein co-occurring with RecR | low | > 74 |
| Klebsiella michiganensis M5al | 0.42 | BWI76_RS02850 | | metalloprotease PmbA | 0.52 | BWI76_RS06825 | | nucleoid-associated protein, YbaB/EbfC family | — | — |
| Escherichia fergusonii Becca | 0.42 | EFB2_04298 | | Metalloprotease PmbA | 0.64 | EFB2_03587 | | Nucleoid-associated protein YbaB | low | > 86 |
| Alteromonas macleodii MIT1002 | 0.42 | MIT1002_00230 | | peptidase PmbA | 0.69 | MIT1002_02653 | | Nucleoid-associated protein YbaB | low | > 70 |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS24570 | | metalloprotease PmbA | 0.64 | ECOLIN_RS02800 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Enterobacter sp. TBS_079 | 0.42 | MPMX20_00517 | | Metalloprotease PmbA | 0.59 | MPMX20_01073 | | Nucleoid-associated protein YbaB | low | > 85 |
| Enterobacter asburiae PDN3 | 0.42 | EX28DRAFT_3422 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.60 | EX28DRAFT_2486 | | DNA-binding protein, YbaB/EbfC family | — | — |
| Lysobacter sp. OAE881 | 0.41 | ABIE51_RS06805 | | metalloprotease PmbA | 0.59 | ABIE51_RS14015 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Dickeya dadantii 3937 | 0.41 | DDA3937_RS01500 | | metalloprotease PmbA | 0.64 | DDA3937_RS05785 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Shewanella oneidensis MR-1 | 0.41 | SO4078 | pmbA | pmba protein (NCBI ptt file) | 0.59 | SO2014 | | conserved hypothetical protein TIGR00103 (NCBI ptt file) | low | > 76 |
| Shewanella sp. ANA-3 | 0.41 | Shewana3_3631 | | microcin-processing peptidase 1 (RefSeq) | 0.60 | Shewana3_2445 | | hypothetical protein (RefSeq) | low | > 73 |
| Dickeya dianthicola 67-19 | 0.41 | HGI48_RS01415 | | metalloprotease PmbA | 0.64 | HGI48_RS05835 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Dickeya dianthicola ME23 | 0.41 | DZA65_RS01480 | | metalloprotease PmbA | 0.64 | DZA65_RS06160 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Shewanella loihica PV-4 | 0.40 | Shew_0416 | | peptidase U62, modulator of DNA gyrase (RefSeq) | 0.64 | Shew_2234 | | hypothetical protein (RefSeq) | — | — |
| Pantoea sp. MT58 | 0.40 | IAI47_02765 | | metalloprotease PmbA | 0.62 | IAI47_14470 | | YbaB/EbfC family nucleoid-associated protein | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.39 | LU632_RS02145 | pmbA | metalloprotease PmbA | 0.59 | LU632_RS18110 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Kangiella aquimarina DSM 16071 | 0.38 | B158DRAFT_2075 | | microcin-processing peptidase 1. Unknown type peptidase. MEROPS family U62 | 0.49 | B158DRAFT_2479 | | DNA-binding protein, YbaB/EbfC family | low | > 40 |
| Azospirillum brasilense Sp245 | 0.33 | AZOBR_RS11930 | | modulator protein | 0.34 | AZOBR_RS03875 | | hypothetical protein | — | — |
| Azospirillum sp. SherDot2 | 0.31 | MPMX19_01886 | | Metalloprotease PmbA | 0.35 | MPMX19_02194 | | Nucleoid-associated protein YbaB | — | — |
| Magnetospirillum magneticum AMB-1 | 0.31 | AMB_RS22120 | | TldD/PmbA family protein | 0.44 | AMB_RS20750 | | YbaB/EbfC family nucleoid-associated protein | low | > 64 |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_005930 | | TldD/PmbA family protein | 0.39 | TX73_003190 | | YbaB/EbfC family nucleoid-associated protein | low | > 86 |
| Rhodospirillum rubrum S1H | 0.28 | Rru_A0575 | | Peptidase U62, modulator of DNA gyrase (NCBI) | 0.45 | Rru_A3472 | | hypothetical protein (NCBI) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.28 | PGA1_c33480 | | protein PmbA | 0.38 | PGA1_c30280 | | DNA-binding protein, YbaB/EbfC family | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.27 | Ga0059261_0810 | | Predicted Zn-dependent proteases and their inactivated homologs | 0.37 | Ga0059261_0668 | | DNA-binding protein, YbaB/EbfC family | — | — |
| Sinorhizobium meliloti 1021 | 0.26 | SMc00897 | | PMBA protein | 0.39 | SMc02906 | | hypothetical protein | low | > 103 |
| Rhizobium sp. OAE497 | 0.25 | ABIE40_RS03780 | | TldD/PmbA family protein | 0.41 | ABIE40_RS00285 | | YbaB/EbfC family nucleoid-associated protein | — | — |
| Dinoroseobacter shibae DFL-12 | 0.25 | Dshi_0064 | | peptidase U62 modulator of DNA gyrase (RefSeq) | 0.41 | Dshi_0649 | | hypothetical protein (RefSeq) | low | > 64 |
| Agrobacterium fabrum C58 | 0.25 | Atu0693 | | PmbA/TldD related protein | 0.45 | Atu0095 | | hypothetical protein | low | > 89 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.07 | CA264_16645 | | peptidase C69 | 0.30 | CA264_04550 | | nucleoid-associated protein, YbaB/EbfC family | low | > 74 |
Not shown: 7 genomes with orthologs for Dsui_1234 only; 7 genomes with orthologs for Dsui_1810 only