| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 1.0 | CSW01_13680 | | DNA helicase RecG | 0.44 | 17 |
| Klebsiella michiganensis M5al | 0.64 | BWI76_RS11050 | | 23S rRNA pseudouridine(955/2504/2580) synthase | 0.68 | BWI76_RS27440 | | DNA helicase RecG | low | > 92 |
| Enterobacter sp. TBS_079 | 0.64 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | 0.68 | MPMX20_00084 | | ATP-dependent DNA helicase RecG | low | > 85 |
| Enterobacter asburiae PDN3 | 0.64 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | 0.67 | EX28DRAFT_3901 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 76 |
| Klebsiella pneumoniae MKP103 | 0.63 | KDGMDA_18660 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.69 | KDGMDA_08135 | | ATP-dependent DNA helicase RecG | low | > 95 |
| Escherichia coli ECOR27 | 0.63 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.68 | NOLOHH_07425 | recG | ATP-dependent DNA helicase RecG | 0.82 | 35 |
| Escherichia coli BW25113 | 0.63 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | 0.68 | b3652 | recG | ATP-dependent DNA helicase (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.63 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.68 | HEPCGN_14365 | recG | ATP-dependent DNA helicase RecG | low | > 88 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.63 | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | 0.68 | OHPLBJKB_00049 | | ATP-dependent DNA helicase RecG | 0.71 | 55 |
| Rahnella sp. WP5 | 0.63 | EX31_RS24400 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.67 | EX31_RS15820 | | ATP-dependent DNA helicase RecG | low | > 89 |
| Escherichia coli ECRC62 | 0.63 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.68 | BNILDI_04090 | recG | ATP-dependent DNA helicase RecG | low | > 75 |
| Escherichia fergusonii Becca | 0.63 | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | 0.68 | EFB2_00136 | | ATP-dependent DNA helicase RecG | low | > 86 |
| Escherichia coli BL21 | 0.63 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | 0.68 | ECD_03509 | | ATP-dependent DNA helicase | low | > 61 |
| Escherichia coli ECRC100 | 0.63 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.69 | OKFHMN_15545 | recG | ATP-dependent DNA helicase RecG | low | > 79 |
| Escherichia coli Nissle 1917 | 0.63 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.68 | ECOLIN_RS20800 | | ATP-dependent DNA helicase RecG | low | > 55 |
| Escherichia coli ECRC98 | 0.63 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.69 | JDDGAC_19170 | recG | ATP-dependent DNA helicase RecG | low | > 87 |
| Escherichia coli ECRC102 | 0.63 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.69 | NIAGMN_13305 | recG | ATP-dependent DNA helicase RecG | low | > 80 |
| Pectobacterium carotovorum WPP14 | 0.63 | HER17_RS08615 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.68 | HER17_RS21395 | | ATP-dependent DNA helicase RecG | low | > 75 |
| Escherichia coli ECRC101 | 0.63 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.69 | MCAODC_06055 | recG | ATP-dependent DNA helicase RecG | low | > 88 |
| Escherichia coli ECRC99 | 0.63 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.69 | KEDOAH_12600 | recG | ATP-dependent DNA helicase RecG | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.62 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.69 | GFF355 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 78 |
| Erwinia amylovora T8 | 0.62 | OLJFJH_15565 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.69 | OLJFJH_05550 | | ATP-dependent DNA helicase RecG | low | > 58 |
| Erwinia tracheiphila SCR3 | 0.62 | LU632_RS14855 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.67 | LU632_RS22190 | recG | ATP-dependent DNA helicase RecG | low | > 74 |
| Pantoea agglomerans CFBP13505 P0401 | 0.62 | PagCFBP13505_RS05230 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.70 | PagCFBP13505_RS18845 | | ATP-dependent DNA helicase RecG | low | > 74 |
| Pantoea sp. MT58 | 0.62 | IAI47_12105 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.70 | IAI47_00500 | | ATP-dependent DNA helicase RecG | 0.44 | 68 |
| Erwinia tracheiphila HP pepo 2.2 | 0.62 | IJEDHG_00715 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.67 | IJEDHG_08345 | recG | ATP-dependent DNA helicase RecG | low | > 61 |
| Serratia liquefaciens MT49 | 0.61 | IAI46_09755 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.69 | IAI46_24905 | | ATP-dependent DNA helicase RecG | low | > 86 |
| Shewanella sp. ANA-3 | 0.61 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | 0.65 | Shewana3_0348 | | ATP-dependent DNA helicase RecG (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.60 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | 0.65 | Shew_3507 | | ATP-dependent DNA helicase RecG (RefSeq) | 0.58 | 38 |
| Shewanella amazonensis SB2B | 0.60 | Sama_1988 | | pseudouridylate synthase (RefSeq) | 0.65 | Sama_3375 | | ATP-dependent DNA helicase RecG (RefSeq) | low | > 62 |
| Dickeya dianthicola ME23 | 0.59 | DZA65_RS13690 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.68 | DZA65_RS22160 | | ATP-dependent DNA helicase RecG | 0.38 | 10 |
| Dickeya dadantii 3937 | 0.59 | DDA3937_RS13155 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.69 | DDA3937_RS00170 | | ATP-dependent DNA helicase RecG | low | > 74 |
| Dickeya dianthicola 67-19 | 0.59 | HGI48_RS13220 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.68 | HGI48_RS21190 | | ATP-dependent DNA helicase RecG | low | > 71 |
| Alteromonas macleodii MIT1002 | 0.57 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | 0.64 | MIT1002_00111 | | ATP-dependent DNA helicase RecG | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.50 | B158DRAFT_1770 | | ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) | 0.49 | B158DRAFT_0566 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 40 |
| Pseudomonas sp. BP01 | 0.50 | JOY50_RS16830 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.56 | JOY50_RS08945 | recG | ATP-dependent DNA helicase RecG | low | > 84 |
| Pseudomonas stutzeri RCH2 | 0.50 | Psest_1680 | | pseudouridine synthase, RluA family | 0.57 | Psest_4192 | | ATP-dependent DNA helicase RecG | — | — |
| Pseudomonas putida KT2440 | 0.50 | PP_1906 | | ribosomal large subunit pseudouridine synthase C | 0.56 | PP_5310 | | junction-specific ATP-dependent DNA helicase | 0.26 | 63 |
| Pseudomonas sp. S08-1 | 0.50 | OH686_22095 | | LSU rRNA pseudouridine(955/2504/2580) synthase | 0.56 | OH686_13505 | | ATP-dependent DNA helicase RecG | low | > 80 |
| Marinobacter adhaerens HP15 | 0.49 | HP15_2221 | | pseudouridine synthase, RluA family | 0.55 | HP15_309 | | DNA helicase, ATP-dependent, RecG | low | > 73 |
| Pseudomonas sp. SVBP6 | 0.49 | COO64_RS05845 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.55 | COO64_RS01595 | recG | ATP-dependent DNA helicase RecG | low | > 93 |
| Pseudomonas segetis P6 | 0.49 | MPMX49_02072 | | Ribosomal large subunit pseudouridine synthase C | 0.57 | MPMX49_00040 | | ATP-dependent DNA helicase RecG | low | > 75 |
| Pseudomonas sp. RS175 | 0.49 | PFR28_03018 | | Ribosomal large subunit pseudouridine synthase C | 0.55 | PFR28_04435 | | ATP-dependent DNA helicase RecG | low | > 88 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.48 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.55 | Psyr_0201 | | ATP-dependent DNA helicase RecG | low | > 86 |
| Pseudomonas sp. DMC3 | 0.48 | GFF4765 | | Ribosomal large subunit pseudouridine synthase C | 0.55 | GFF427 | | ATP-dependent DNA helicase RecG | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.48 | AO356_20125 | | 23S rRNA pseudouridylate synthase | 0.55 | AO356_12380 | | ATP-dependent DNA helicase RecG | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.48 | Pf6N2E2_5944 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.55 | Pf6N2E2_4352 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 103 |
| Pseudomonas syringae pv. syringae B728a | 0.48 | Psyr_1639 | | ribosomal large subunit pseudouridine synthase C | 0.55 | Psyr_0201 | | ATP-dependent DNA helicase RecG | low | > 86 |
| Pseudomonas aeruginosa PA14 | 0.48 | IKLFDK_15135 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.55 | IKLFDK_26730 | | ATP-dependent DNA helicase RecG | low | > 100 |
| Pseudomonas fluorescens SBW25-INTG | 0.47 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.55 | PFLU_RS29550 | | ATP-dependent DNA helicase RecG | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.47 | PFLU_RS23095 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | 0.55 | PFLU_RS29550 | | ATP-dependent DNA helicase RecG | low | > 109 |
| Pseudomonas lactucae CFBP13502 | 0.47 | GEMAOFIL_04440 | | Ribosomal large subunit pseudouridine synthase C | 0.55 | GEMAOFIL_00042 | | ATP-dependent DNA helicase RecG | low | > 93 |
| Pseudomonas simiae WCS417 | 0.47 | PS417_21480 | | 23S rRNA pseudouridylate synthase | 0.55 | PS417_27870 | | ATP-dependent DNA helicase RecG | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_01405 | | 23S rRNA pseudouridylate synthase | 0.55 | AO353_09320 | | ATP-dependent DNA helicase RecG | low | > 101 |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_2097 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.55 | PfGW456L13_772 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.45 | Pf1N1B4_459 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.55 | Pf1N1B4_2105 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS04500 | | RluA family pseudouridine synthase | 0.44 | QEN71_RS26630 | | ATP-dependent DNA helicase RecG | — | — |
| Burkholderia phytofirmans PsJN | 0.43 | BPHYT_RS14480 | | ribosomal large subunit pseudouridine synthase C | 0.44 | BPHYT_RS03400 | | ATP-dependent DNA helicase RecG | low | > 109 |
| Paraburkholderia graminis OAS925 | 0.43 | ABIE53_003058 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.44 | ABIE53_000833 | | ATP-dependent DNA helicase RecG | low | > 113 |
| Herbaspirillum seropedicae SmR1 | 0.43 | HSERO_RS09415 | | ribosomal large subunit pseudouridine synthase C | 0.44 | HSERO_RS06165 | | ATP-dependent DNA helicase RecG | low | > 78 |
| Acidovorax sp. GW101-3H11 | 0.43 | Ac3H11_1590 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.44 | Ac3H11_781 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 79 |
| Variovorax sp. SCN45 | 0.43 | GFF3847 | | LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) | 0.38 | GFF5538 | | ATP-dependent DNA helicase RecG (EC 3.6.4.12) | low | > 127 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.43 | Xcc-8004.2616.1 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.51 | Xcc-8004.1204.1 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 74 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.43 | H281DRAFT_04340 | | 23S rRNA pseudouridine955/2504/2580 synthase | 0.44 | H281DRAFT_04672 | | ATP-dependent DNA helicase RecG | low | > 103 |
| Lysobacter sp. OAE881 | 0.42 | ABIE51_RS11800 | | RluA family pseudouridine synthase | 0.53 | ABIE51_RS17230 | | ATP-dependent DNA helicase RecG | low | > 62 |
| Variovorax sp. OAS795 | 0.42 | ABID97_RS08250 | | RluA family pseudouridine synthase | 0.41 | ABID97_RS01575 | | ATP-dependent DNA helicase RecG | low | > 91 |
| Rhodanobacter sp. FW510-T8 | 0.41 | OKGIIK_07405 | rluA | 23S rRNA pseudouridine(955/2504/2580) synthase | 0.50 | OKGIIK_12090 | recG | ATP-dependent DNA helicase RecG | low | > 52 |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS14375 | | RluA family pseudouridine synthase | 0.45 | RALBFv3_RS05675 | | DNA helicase RecG | low | > 76 |
| Rhodanobacter denitrificans MT42 | 0.41 | LRK55_RS17750 | | RluA family pseudouridine synthase | 0.51 | LRK55_RS11530 | | ATP-dependent DNA helicase RecG | low | > 63 |
| Dechlorosoma suillum PS | 0.41 | Dsui_2437 | | pseudouridine synthase, RluA family | 0.42 | Dsui_0311 | | ATP-dependent DNA helicase RecG | low | > 51 |
| Cupriavidus basilensis FW507-4G11 | 0.41 | RR42_RS14155 | | pseudouridine synthase | 0.45 | RR42_RS17390 | | ATP-dependent DNA helicase RecG | low | > 128 |
| Rhodanobacter denitrificans FW104-10B01 | 0.41 | LRK54_RS17895 | | RluA family pseudouridine synthase | 0.50 | LRK54_RS11805 | | ATP-dependent DNA helicase RecG | low | > 59 |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS11840 | | RluA family pseudouridine synthase | 0.45 | UW163_RS07950 | | DNA helicase RecG | — | — |
| Acinetobacter baumannii LAC-4 | 0.41 | RR41_RS16980 | | RluA family pseudouridine synthase | 0.52 | RR41_RS02075 | | ATP-dependent DNA helicase RecG | — | — |
| Ralstonia solanacearum PSI07 | 0.41 | RPSI07_RS19085 | | RluA family pseudouridine synthase | 0.45 | RPSI07_RS11625 | | DNA helicase RecG | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS05155 | | RluA family pseudouridine synthase | 0.45 | RS_RS13565 | | DNA helicase RecG | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.41 | GFF121 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | 0.40 | GFF2802 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | low | > 90 |
| Methylophilus sp. DMC18 | 0.41 | GFF1177 | | Ribosomal large subunit pseudouridine synthase C | 0.45 | GFF2125 | | ATP-dependent DNA helicase RecG | low | > 43 |
| Ralstonia sp. UNC404CL21Col | 0.41 | ABZR87_RS10090 | | RluA family pseudouridine synthase | 0.45 | ABZR87_RS01270 | | ATP-dependent DNA helicase RecG | low | > 80 |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_00317 | | Ribosomal large subunit pseudouridine synthase C | 0.52 | MPMX26_02732 | | ATP-dependent DNA helicase RecG | low | > 36 |
| Rhodanobacter sp000427505 FW510-R12 | 0.39 | LRK53_RS11465 | | RluA family pseudouridine synthase | 0.52 | LRK53_RS16735 | | ATP-dependent DNA helicase RecG | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.38 | ABZR86_RS02725 | | RluA family pseudouridine synthase | 0.51 | ABZR86_RS11840 | | ATP-dependent DNA helicase RecG | low | > 74 |
| Castellaniella sp019104865 MT123 | 0.38 | ABCV34_RS08415 | | RluA family pseudouridine synthase | 0.41 | ABCV34_RS03570 | | ATP-dependent DNA helicase RecG | 0.51 | 20 |
| Phaeobacter inhibens DSM 17395 | 0.30 | PGA1_c01950 | | ribosomal large subunit pseudouridine synthase C | 0.32 | PGA1_c14380 | | ATP-dependent DNA helicase RecG | — | — |
| Agrobacterium fabrum C58 | 0.27 | Atu1471 | | ribosomal large subunit pseudouridine synthase C | 0.33 | Atu1780 | | ATP-dependent DNA helicase | — | — |
| Magnetospirillum magneticum AMB-1 | 0.26 | AMB_RS15620 | | RluA family pseudouridine synthase | 0.34 | AMB_RS12400 | | ATP-dependent DNA helicase RecG | — | — |
| Sinorhizobium meliloti 1021 | 0.26 | SMc01275 | | ribosomal large subunit pseudouridine synthase C protein | 0.35 | SMc00228 | | ATP-dependent DNA helicase RecG | low | > 103 |
| Rhizobium sp. OAE497 | 0.26 | ABIE40_RS09915 | | RluA family pseudouridine synthase | 0.34 | ABIE40_RS09300 | | ATP-dependent DNA helicase RecG | low | > 107 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.25 | A4249_RS07865 | | RluA family pseudouridine synthase | 0.30 | A4249_RS04765 | | ATP-dependent DNA helicase RecG | low | > 48 |
| Caulobacter crescentus NA1000 Δfur | 0.25 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | 0.33 | CCNA_01504 | | ATP-dependent DNA helicase recG | low | > 67 |
| Caulobacter crescentus NA1000 | 0.25 | CCNA_02059 | | ribosomal large subunit pseudouridine synthase C | 0.33 | CCNA_01504 | | ATP-dependent DNA helicase recG | low | > 66 |
| Rhodospirillum rubrum S1H | 0.25 | Rru_A2659 | | Pseudouridine synthase, RluD (NCBI) | 0.29 | Rru_A1728 | | ATP-dependent DNA helicase RecG (NCBI) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.24 | Ga0059261_1033 | | pseudouridine synthase, RluA family | 0.31 | Ga0059261_0958 | | ATP-dependent DNA helicase RecG (EC 3.6.1.-) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.24 | Dshi_0315 | | pseudouridine synthase, RluA family (RefSeq) | 0.32 | Dshi_1510 | | DEAD/DEAH box helicase domain protein (RefSeq) | low | > 64 |
| Fusobacterium nucleatum SB010 | 0.23 | HUW76_04985 | | RluA family pseudouridine synthase | 0.32 | HUW76_01465 | | ATP-dependent DNA helicase RecG | low | > 35 |
| Azospirillum sp. SherDot2 | 0.23 | MPMX19_01718 | | Ribosomal large subunit pseudouridine synthase C | 0.34 | MPMX19_00951 | | ATP-dependent DNA helicase RecG | — | — |
| Xanthobacter sp. DMC5 | 0.22 | GFF1347 | | Ribosomal large subunit pseudouridine synthase C | 0.29 | GFF630 | | ATP-dependent DNA helicase RecG | — | — |
| Azospirillum brasilense Sp245 | 0.21 | AZOBR_RS06905 | | pseudouridine synthase | 0.33 | AZOBR_RS09850 | | ATP-dependent DNA helicase RecG | low | > 97 |
Not shown: 0 genomes with orthologs for CSW01_10130 only; 16 genomes with orthologs for CSW01_13680 only