Conservation of cofitness between CSW01_10130 and CSW01_13680 in Vibrio cholerae E7946 ATCC 55056

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 1.0 CSW01_13680 DNA helicase RecG 0.44 17
Klebsiella michiganensis M5al 0.64 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.68 BWI76_RS27440 DNA helicase RecG low > 92
Enterobacter sp. TBS_079 0.64 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.68 MPMX20_00084 ATP-dependent DNA helicase RecG low > 85
Enterobacter asburiae PDN3 0.64 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.67 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 76
Klebsiella pneumoniae MRSN742743 0.63 GJGHJB_03168 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.69 GJGHJB_00114 recG ATP-dependent DNA helicase RecG low > 83
Klebsiella pneumoniae MKP103 0.63 KDGMDA_18660 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.69 KDGMDA_08135 ATP-dependent DNA helicase RecG low > 94
Escherichia coli BL21 0.63 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.68 ECD_03509 ATP-dependent DNA helicase low > 61
Escherichia coli ECOR38 0.63 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.68 HEPCGN_14365 recG ATP-dependent DNA helicase RecG low > 88
Escherichia coli BW25113 0.63 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.68 b3652 recG ATP-dependent DNA helicase (NCBI) low > 76
Escherichia coli ECOR27 0.63 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.68 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 0.62 73
Escherichia coli HS(pFamp)R (ATCC 700891) 0.63 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.68 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.72 63
Escherichia fergusonii Becca 0.63 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.68 EFB2_00136 ATP-dependent DNA helicase RecG low > 86
Escherichia coli ECRC62 0.63 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.68 BNILDI_04090 recG ATP-dependent DNA helicase RecG low > 75
Rahnella sp. WP5 0.63 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 EX31_RS15820 ATP-dependent DNA helicase RecG low > 89
Escherichia coli Nissle 1917 0.63 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.68 ECOLIN_RS20800 ATP-dependent DNA helicase RecG low > 55
Escherichia coli ECRC99 0.63 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.69 KEDOAH_12600 recG ATP-dependent DNA helicase RecG — —
Escherichia coli ECRC98 0.63 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.69 JDDGAC_19170 recG ATP-dependent DNA helicase RecG low > 87
Escherichia coli ECRC102 0.63 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.69 NIAGMN_13305 recG ATP-dependent DNA helicase RecG low > 80
Escherichia coli ECRC101 0.63 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.69 MCAODC_06055 recG ATP-dependent DNA helicase RecG low > 87
Pectobacterium carotovorum WPP14 0.63 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.68 HER17_RS21395 ATP-dependent DNA helicase RecG low > 75
Escherichia coli ECRC100 0.63 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.69 OKFHMN_15545 recG ATP-dependent DNA helicase RecG low > 79
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.69 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 78
Pantoea sp. MT58 0.62 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.70 IAI47_00500 ATP-dependent DNA helicase RecG low > 76
Erwinia amylovora T8 0.62 OLJFJH_15565 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.69 OLJFJH_05550 ATP-dependent DNA helicase RecG low > 58
Pantoea agglomerans CFBP13505 P0401 0.62 PagCFBP13516_RS12165 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.70 PagCFBP13516_RS00485 recG ATP-dependent DNA helicase RecG low > 80
Erwinia tracheiphila SCR3 0.62 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 LU632_RS22190 recG ATP-dependent DNA helicase RecG low > 73
Erwinia tracheiphila HP pepo 2.2 0.62 IJEDHG_00715 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.67 IJEDHG_08345 recG ATP-dependent DNA helicase RecG low > 61
Serratia liquefaciens MT49 0.61 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.69 IAI46_24905 ATP-dependent DNA helicase RecG low > 87
Shewanella sp. ANA-3 0.61 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) 0.65 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) low > 73
Shewanella loihica PV-4 0.60 Shew_1594 RluA family pseudouridine synthase (RefSeq) 0.65 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.58 38
Shewanella amazonensis SB2B 0.60 Sama_1988 pseudouridylate synthase (RefSeq) 0.65 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) low > 62
Dickeya dianthicola 67-19 0.59 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.68 HGI48_RS21190 ATP-dependent DNA helicase RecG low > 71
Dickeya dadantii 3937 0.59 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.69 DDA3937_RS00170 ATP-dependent DNA helicase RecG low > 74
Dickeya dianthicola ME23 0.59 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.68 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.38 10
Alteromonas macleodii MIT1002 0.57 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C 0.64 MIT1002_00111 ATP-dependent DNA helicase RecG low > 70
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) 0.49 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 40
Pseudomonas sp. BP01 0.50 JOY50_RS16830 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.56 JOY50_RS08945 recG ATP-dependent DNA helicase RecG low > 84
Pseudomonas stutzeri RCH2 0.50 Psest_1680 pseudouridine synthase, RluA family 0.57 Psest_4192 ATP-dependent DNA helicase RecG — —
Pseudomonas sp. S08-1 0.50 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase 0.56 OH686_13505 ATP-dependent DNA helicase RecG low > 80
Pseudomonas putida KT2440 0.50 PP_1906 ribosomal large subunit pseudouridine synthase C 0.56 PP_5310 junction-specific ATP-dependent DNA helicase 0.26 63
Marinobacter adhaerens HP15 0.49 HP15_2221 pseudouridine synthase, RluA family 0.55 HP15_309 DNA helicase, ATP-dependent, RecG low > 73
Pseudomonas segetis P6 0.49 ACVTMO_RS10270 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.57 ACVTMO_RS00200 recG ATP-dependent DNA helicase RecG low > 75
Pseudomonas sp. SVBP6 0.49 COO64_RS05845 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.55 COO64_RS01595 recG ATP-dependent DNA helicase RecG low > 91
Pseudomonas sp. RS175 0.49 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.55 PFR28_04435 ATP-dependent DNA helicase RecG low > 88
Pseudomonas syringae pv. syringae B728a 0.48 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.55 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas fluorescens FW300-N2C3 0.48 AO356_20125 23S rRNA pseudouridylate synthase 0.55 AO356_12380 ATP-dependent DNA helicase RecG low > 104
Pseudomonas sp. DMC3 0.48 GFF4765 Ribosomal large subunit pseudouridine synthase C 0.55 GFF427 ATP-dependent DNA helicase RecG low > 89
Pseudomonas aeruginosa PUPa3 0.48 NPBIFN_02033 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.55 NPBIFN_05672 recG ATP-dependent DNA helicase RecG low > 101
Pseudomonas aeruginosa PA14 0.48 IKLFDK_15135 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.55 IKLFDK_26730 ATP-dependent DNA helicase RecG low > 98
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.55 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 103
Pseudomonas syringae pv. syringae B728a ΔmexB 0.48 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.55 Psyr_0201 ATP-dependent DNA helicase RecG low > 86
Pseudomonas aeruginosa MRSN321 0.48 PFGADD_01994 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.55 PFGADD_05596 recG ATP-dependent DNA helicase RecG low > 99
Pseudomonas orientalis W4I3 0.47 QF045_RS23560 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.55 QF045_RS02225 ATP-dependent DNA helicase RecG low > 93
Pseudomonas lactucae CFBP13502 0.47 GEMAOFIL_04440 Ribosomal large subunit pseudouridine synthase C 0.55 GEMAOFIL_00042 ATP-dependent DNA helicase RecG low > 96
Pseudomonas fluorescens SBW25 0.47 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.55 PFLU_RS29550 ATP-dependent DNA helicase RecG low > 109
Pseudomonas simiae WCS417 0.47 PS417_21480 23S rRNA pseudouridylate synthase 0.55 PS417_27870 ATP-dependent DNA helicase RecG low > 88
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_01405 23S rRNA pseudouridylate synthase 0.55 AO353_09320 ATP-dependent DNA helicase RecG low > 101
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.55 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 87
Pseudomonas fluorescens FW300-N1B4 0.45 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.55 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) — —
Pseudomonas protegens RBAN4 0.45 FABNJH_09265 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.55 FABNJH_30625 recG ATP-dependent DNA helicase RecG — —
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS04500 RluA family pseudouridine synthase 0.44 QEN71_RS26630 ATP-dependent DNA helicase RecG — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C 0.44 BPHYT_RS03400 ATP-dependent DNA helicase RecG low > 109
Paraburkholderia graminis OAS925 0.43 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase 0.44 ABIE53_000833 ATP-dependent DNA helicase RecG low > 113
Herbaspirillum seropedicae SmR1 0.43 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C 0.44 HSERO_RS06165 ATP-dependent DNA helicase RecG low > 78
Acidovorax sp. GW101-3H11 0.43 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 79
Variovorax sp. SCN45 0.43 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) 0.38 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) low > 127
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 74
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase 0.44 H281DRAFT_04672 ATP-dependent DNA helicase RecG low > 103
Lysobacter sp. OAE881 0.42 ABIE51_RS11800 RluA family pseudouridine synthase 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG low > 62
Variovorax sp. OAS795 0.42 ABID97_RS08250 RluA family pseudouridine synthase 0.41 ABID97_RS01575 ATP-dependent DNA helicase RecG low > 91
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase 0.50 OKGIIK_12090 recG ATP-dependent DNA helicase RecG low > 53
Acinetobacter baumannii LAC-4 0.41 RR41_RS16980 RluA family pseudouridine synthase 0.52 RR41_RS02075 ATP-dependent DNA helicase RecG — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS17895 RluA family pseudouridine synthase 0.50 LRK54_RS11805 ATP-dependent DNA helicase RecG low > 59
Ralstonia solanacearum UW163 0.41 UW163_RS11840 RluA family pseudouridine synthase 0.45 UW163_RS07950 DNA helicase RecG — —
Rhodanobacter denitrificans MT42 0.41 LRK55_RS17750 RluA family pseudouridine synthase 0.51 LRK55_RS11530 ATP-dependent DNA helicase RecG low > 63
Cupriavidus basilensis FW507-4G11 0.41 RR42_RS14155 pseudouridine synthase 0.45 RR42_RS17390 ATP-dependent DNA helicase RecG low > 128
Dechlorosoma suillum PS 0.41 Dsui_2437 pseudouridine synthase, RluA family 0.42 Dsui_0311 ATP-dependent DNA helicase RecG low > 51
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS14375 RluA family pseudouridine synthase 0.45 RALBFv3_RS05675 DNA helicase RecG low > 76
Ralstonia solanacearum GMI1000 0.41 RS_RS05155 RluA family pseudouridine synthase 0.45 RS_RS13565 DNA helicase RecG — —
Ralstonia solanacearum PSI07 0.41 RPSI07_RS19085 RluA family pseudouridine synthase 0.45 RPSI07_RS11625 DNA helicase RecG low > 81
Methylophilus sp. DMC18 0.41 GFF1177 Ribosomal large subunit pseudouridine synthase C 0.45 GFF2125 ATP-dependent DNA helicase RecG low > 43
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.40 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) low > 90
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS10090 RluA family pseudouridine synthase 0.45 ABZR87_RS01270 ATP-dependent DNA helicase RecG low > 80
Acinetobacter radioresistens SK82 0.40 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C 0.52 MPMX26_02732 ATP-dependent DNA helicase RecG low > 36
Rhodanobacter sp000427505 FW510-R12 0.39 LRK53_RS11465 RluA family pseudouridine synthase 0.52 LRK53_RS16735 ATP-dependent DNA helicase RecG — —
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS02725 RluA family pseudouridine synthase 0.51 ABZR86_RS11840 ATP-dependent DNA helicase RecG low > 74
Castellaniella sp019104865 MT123 0.38 ABCV34_RS08415 RluA family pseudouridine synthase 0.41 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.61 17
Phaeobacter inhibens DSM 17395 0.30 PGA1_c01950 ribosomal large subunit pseudouridine synthase C 0.32 PGA1_c14380 ATP-dependent DNA helicase RecG — —
Agrobacterium fabrum C58 0.27 Atu1471 ribosomal large subunit pseudouridine synthase C 0.33 Atu1780 ATP-dependent DNA helicase — —
Magnetospirillum magneticum AMB-1 0.26 AMB_RS15620 RluA family pseudouridine synthase 0.34 AMB_RS12400 ATP-dependent DNA helicase RecG — —
Sinorhizobium meliloti 1021 0.26 SMc01275 ribosomal large subunit pseudouridine synthase C protein 0.35 SMc00228 ATP-dependent DNA helicase RecG low > 103
Rhizobium sp. OAE497 0.26 ABIE40_RS09915 RluA family pseudouridine synthase 0.34 ABIE40_RS09300 ATP-dependent DNA helicase RecG low > 107
Caulobacter crescentus NA1000 Δfur 0.25 CCNA_02059 ribosomal large subunit pseudouridine synthase C 0.33 CCNA_01504 ATP-dependent DNA helicase recG low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.25 A4249_RS07865 RluA family pseudouridine synthase 0.30 A4249_RS04765 ATP-dependent DNA helicase RecG low > 48
Caulobacter crescentus NA1000 0.25 CCNA_02059 ribosomal large subunit pseudouridine synthase C 0.33 CCNA_01504 ATP-dependent DNA helicase recG low > 66
Rhodospirillum rubrum S1H 0.25 Rru_A2659 Pseudouridine synthase, RluD (NCBI) 0.29 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) — —

Not shown: 0 genomes with orthologs for CSW01_10130 only; 21 genomes with orthologs for CSW01_13680 only