| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_11740 | | cysteine desulfurase CsdA | 1.0 | CSW01_13285 | | ribulose-phosphate 3-epimerase | 0.64 | 19 |
| Dickeya dadantii 3937 | 0.54 | DDA3937_RS05040 | | cysteine desulfurase CsdA | 0.75 | DDA3937_RS19530 | | ribulose-phosphate 3-epimerase | — | — |
| Marinobacter adhaerens HP15 | 0.54 | HP15_2987 | | cysteine desulfurase, SufS subfamily | 0.69 | HP15_3286 | | ribulose-phosphate 3-epimerase-like protein | — | — |
| Dickeya dianthicola 67-19 | 0.53 | HGI48_RS05045 | | cysteine desulfurase CsdA | 0.76 | HGI48_RS19660 | | ribulose-phosphate 3-epimerase | — | — |
| Dickeya dianthicola ME23 | 0.53 | DZA65_RS05385 | | cysteine desulfurase CsdA | 0.76 | DZA65_RS20745 | | ribulose-phosphate 3-epimerase | — | — |
| Pectobacterium carotovorum WPP14 | 0.52 | HER17_RS16425 | | cysteine desulfurase CsdA | 0.76 | HER17_RS01795 | | ribulose-phosphate 3-epimerase | low | > 75 |
| Bacteroides stercoris CC31F | 0.52 | HMPREF1181_RS02605 | | cysteine desulfurase | 0.39 | HMPREF1181_RS06505 | | ribulose-phosphate 3-epimerase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.51 | Echvi_3061 | | cysteine desulfurases, SufS subfamily | 0.41 | Echvi_3575 | | ribulose-phosphate 3-epimerase | — | — |
| Azospirillum brasilense Sp245 | 0.51 | AZOBR_RS14845 | | cysteine desulfurase | 0.45 | AZOBR_RS06755 | | ribulose-phosphate 3-epimerase | — | — |
| Phocaeicola dorei CL03T12C01 | 0.51 | ABI39_RS04575 | | cysteine desulfurase | 0.41 | ABI39_RS00225 | | ribulose-phosphate 3-epimerase | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.51 | HMPREF1058_RS12220 | | cysteine desulfurase | 0.42 | HMPREF1058_RS07710 | | ribulose-phosphate 3-epimerase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.50 | AO353_24935 | | cysteine sulfinate desulfinase | 0.70 | AO353_07240 | | ribulose phosphate epimerase | — | — |
| Castellaniella sp019104865 MT123 | 0.50 | ABCV34_RS04680 | | cysteine desulfurase | 0.59 | ABCV34_RS10270 | | ribulose-phosphate 3-epimerase | — | — |
| Alteromonas macleodii MIT1002 | 0.49 | MIT1002_02797 | | putative cysteine desulfurase | 0.74 | MIT1002_00441 | | Ribulose-phosphate 3-epimerase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.49 | HMPREF1078_RS11845 | | cysteine desulfurase | 0.39 | HMPREF1078_RS00800 | | ribulose-phosphate 3-epimerase | — | — |
| Azospirillum sp. SherDot2 | 0.49 | MPMX19_04833 | | Cysteine desulfurase | 0.56 | MPMX19_02946 | | Ribulose-phosphate 3-epimerase | — | — |
| Serratia liquefaciens MT49 | 0.48 | IAI46_20350 | | cysteine desulfurase CsdA | 0.76 | IAI46_23685 | | ribulose-phosphate 3-epimerase | low | > 87 |
| Bacteroides ovatus ATCC 8483 | 0.48 | BACOVA_01897 | | cysteine desulfurase, SufS subfamily | 0.40 | BACOVA_01203 | | ribulose-phosphate 3-epimerase | — | — |
| Shewanella loihica PV-4 | 0.48 | Shew_0735 | | SufS subfamily cysteine desulfurase (RefSeq) | 0.77 | Shew_0219 | | ribulose-phosphate 3-epimerase (RefSeq) | — | — |
| Escherichia coli ECOR38 | 0.48 | HEPCGN_19360 | csdA | cysteine desulfurase CsdA | 0.77 | HEPCGN_15950 | rpe | ribulose-phosphate 3-epimerase | low | > 88 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.48 | BT3409 | | aminotransferase, putative cysteine desulfurase (NCBI ptt file) | 0.40 | BT3946 | | ribulose-phosphate 3-epimerase (NCBI ptt file) | — | — |
| Escherichia coli ECRC62 | 0.48 | BNILDI_10490 | csdA | cysteine desulfurase CsdA | 0.77 | BNILDI_02600 | dam | adenine-specific DNA-methyltransferase | — | — |
| Escherichia coli BL21 | 0.48 | ECD_02661 | | cysteine sulfinate desulfinase | 0.77 | ECD_03238 | | D-ribulose-5-phosphate 3-epimerase | low | > 61 |
| Escherichia coli BW25113 | 0.48 | b2810 | csdA | cysteine sulfinate desulfinase (NCBI) | 0.77 | b3386 | rpe | ribulose-phosphate 3-epimerase (NCBI) | low | > 76 |
| Escherichia coli ECRC98 | 0.48 | JDDGAC_23770 | csdA | cysteine desulfurase CsdA | 0.77 | JDDGAC_20760 | dam | adenine-specific DNA-methyltransferase | — | — |
| Escherichia coli ECRC101 | 0.48 | MCAODC_10630 | csdA | cysteine desulfurase CsdA | 0.77 | MCAODC_07660 | dam | adenine-specific DNA-methyltransferase | — | — |
| Escherichia coli ECRC100 | 0.48 | OKFHMN_20105 | csdA | cysteine desulfurase CsdA | 0.77 | OKFHMN_17130 | dam | adenine-specific DNA-methyltransferase | — | — |
| Escherichia coli ECRC102 | 0.48 | NIAGMN_17875 | csdA | cysteine desulfurase CsdA | 0.77 | NIAGMN_14900 | dam | adenine-specific DNA-methyltransferase | — | — |
| Escherichia coli ECRC99 | 0.48 | KEDOAH_08025 | csdA | cysteine desulfurase CsdA | 0.77 | KEDOAH_11010 | dam | adenine-specific DNA-methyltransferase | — | — |
| Escherichia coli Nissle 1917 | 0.48 | ECOLIN_RS15660 | | cysteine desulfurase CsdA | 0.77 | ECOLIN_RS19345 | | ribulose-phosphate 3-epimerase | low | > 55 |
| Enterobacter asburiae PDN3 | 0.48 | EX28DRAFT_2886 | | cysteine desulfurase, catalytic subunit CsdA | 0.78 | EX28DRAFT_4156 | | ribulose-phosphate 3-epimerase | low | > 76 |
| Cellulophaga baltica 18 | 0.48 | M666_RS05720 | | cysteine desulfurase | 0.41 | M666_RS08505 | | ribulose-phosphate 3-epimerase | — | — |
| Rahnella sp. WP5 | 0.48 | EX31_RS13120 | | cysteine desulfurase CsdA | 0.74 | EX31_RS04705 | | ribulose-phosphate 3-epimerase | — | — |
| Escherichia fergusonii Becca | 0.48 | EFB2_01107 | | Cysteine desulfurase CsdA | 0.77 | EFB2_00442 | | Ribulose-phosphate 3-epimerase | — | — |
| Caulobacter crescentus NA1000 | 0.48 | CCNA_01936 | | cysteine desulfurase/selenocysteine lyase | 0.44 | CCNA_00100 | | Ribulose-5-phosphate 3-epimerase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.48 | CCNA_01936 | | cysteine desulfurase/selenocysteine lyase | 0.44 | CCNA_00100 | | Ribulose-5-phosphate 3-epimerase | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.48 | OHPLBJKB_00921 | | Cysteine desulfurase CsdA | 0.77 | OHPLBJKB_00317 | | Ribulose-phosphate 3-epimerase | — | — |
| Escherichia coli ECOR27 | 0.48 | NOLOHH_11985 | csdA | cysteine desulfurase CsdA | 0.77 | NOLOHH_08920 | dam | adenine-specific DNA-methyltransferase | — | — |
| Klebsiella michiganensis M5al | 0.48 | BWI76_RS22965 | | cysteine sulfinate desulfinase | 0.77 | BWI76_RS26070 | | ribulose-phosphate 3-epimerase | — | — |
| Rhodospirillum rubrum S1H | 0.48 | Rru_A2570 | | Cysteine desulphurases, SufS (NCBI) | 0.53 | Rru_A2402 | | Ribulose-phosphate 3-epimerase (NCBI) | — | — |
| Erwinia amylovora T8 | 0.47 | OLJFJH_14575 | | cysteine desulfurase SufS | 0.76 | OLJFJH_04075 | | ribulose-phosphate 3-epimerase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.47 | OKGIIK_09950 | sufS,csdA | cysteine desulfurase CsdA | 0.62 | OKGIIK_12435 | rpe | ribulose-phosphate 3-epimerase | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.47 | CA264_08285 | | aminotransferase | 0.42 | CA264_21180 | | ribulose-phosphate 3-epimerase | low | > 74 |
| Agrobacterium fabrum C58 | 0.47 | Atu1821 | | cysteine desulfurase | 0.45 | Atu1839 | | ribulose-phosphate 3-epimerase | — | — |
| Klebsiella pneumoniae MRSN742743 | 0.47 | GJGHJB_00936 | csdA | cysteine desulfurase CsdA | 0.78 | GJGHJB_00357 | rpe | ribulose-phosphate 3-epimerase | — | — |
| Pantoea sp. MT58 | 0.47 | IAI47_10860 | | cysteine desulfurase SufS | 0.76 | IAI47_01910 | | ribulose-phosphate 3-epimerase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.47 | ABZR86_RS09460 | | cysteine desulfurase | 0.71 | ABZR86_RS12200 | | ribulose-phosphate 3-epimerase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.47 | A4249_RS04590 | | cysteine desulfurase | 0.44 | A4249_RS13160 | | ribulose-phosphate 3-epimerase | — | — |
| Enterobacter sp. TBS_079 | 0.47 | MPMX20_03673 | | Cysteine desulfurase CsdA | 0.77 | MPMX20_04275 | | Ribulose-phosphate 3-epimerase | low | > 85 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.47 | GFF3562 | | Cysteine desulfurase (EC 2.8.1.7), SufS subfamily | 0.76 | GFF633 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | low | > 78 |
| Pantoea agglomerans CFBP13505 P0401 | 0.47 | PagCFBP13516_RS11030 | sufS | cysteine desulfurase SufS | 0.76 | PagCFBP13516_RS01910 | rpe | ribulose-phosphate 3-epimerase | — | — |
| Erwinia tracheiphila SCR3 | 0.47 | LU632_RS11075 | sufS | cysteine desulfurase SufS | 0.76 | LU632_RS22850 | rpe | ribulose-phosphate 3-epimerase | — | — |
| Erwinia tracheiphila HP pepo 2.2 | 0.47 | IJEDHG_25280 | sufS | cysteine desulfurase SufS | 0.76 | IJEDHG_12050 | rpe | ribulose-phosphate 3-epimerase | — | — |
| Sphingobium sp. HT1-2 | 0.47 | GFF970 | | Cysteine desulfurase (EC 2.8.1.7) => SufS | 0.47 | GFF3274 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | — | — |
| Sinorhizobium meliloti 1021 | 0.47 | SMc00533 | | pyridoxal-phosphate-dependent aminotransferase | 0.44 | SMc00511 | | D-ribulose-5-phosphate 3-epimerase | — | — |
| Klebsiella pneumoniae MKP103 | 0.47 | KDGMDA_03530 | | cysteine desulfurase CsdA | 0.78 | KDGMDA_06895 | | ribulose-phosphate 3-epimerase | — | — |
| Rhodanobacter sp000427505 FW510-R12 | 0.47 | LRK53_RS06890 | | cysteine desulfurase | 0.66 | LRK53_RS17105 | | ribulose-phosphate 3-epimerase | — | — |
| Shewanella amazonensis SB2B | 0.46 | Sama_2777 | | aminotransferase, class V (RefSeq) | 0.77 | Sama_3362 | | ribulose-phosphate 3-epimerase (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.46 | SO3789 | | aminotransferase, class V (NCBI ptt file) | 0.78 | SO0292 | rpe | ribulose-phosphate 3-epimerase (NCBI ptt file) | — | — |
| Lysobacter sp. OAE881 | 0.46 | ABIE51_RS15745 | | cysteine desulfurase | 0.66 | ABIE51_RS04135 | | ribulose-phosphate 3-epimerase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.46 | LRK54_RS03080 | | cysteine desulfurase | 0.63 | LRK54_RS11390 | | ribulose-phosphate 3-epimerase | — | — |
| Rhodanobacter denitrificans MT42 | 0.45 | LRK55_RS02830 | | cysteine desulfurase | 0.64 | LRK55_RS11120 | | ribulose-phosphate 3-epimerase | — | — |
| Synechocystis sp000284455 PCC 6803 | 0.45 | SGL_RS15265 | | SufS family cysteine desulfurase | 0.46 | SGL_RS09950 | | ribulose-phosphate 3-epimerase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.45 | Ga0059261_1475 | | cysteine desulfurases, SufSfamily | 0.46 | Ga0059261_2240 | | ribulose-phosphate 3-epimerase | — | — |
| Rhizobium sp. OAE497 | 0.45 | ABIE40_RS09990 | | cysteine desulfurase | 0.44 | ABIE40_RS10105 | | ribulose-phosphate 3-epimerase | — | — |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_0808 | | cysteine desulfurase (RefSeq) | 0.78 | Shewana3_3888 | | ribulose-5-phosphate 3-epimerase (RefSeq) | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.44 | Xcc-8004.1697.1 | | Cysteine desulfurase (EC 2.8.1.7), SufS subfamily | 0.64 | Xcc-8004.605.1 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | — | — |
| Pseudomonas sp. BP01 | 0.44 | JOY50_RS26155 | | cysteine desulfurase | 0.71 | JOY50_RS18210 | rpe | ribulose-phosphate 3-epimerase | — | — |
| Pseudomonas fluorescens SBW25 | 0.43 | PFLU_RS06240 | | cysteine desulfurase | 0.71 | PFLU_RS27390 | | ribulose-phosphate 3-epimerase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.43 | PFLU_RS06240 | | cysteine desulfurase | 0.71 | PFLU_RS27390 | | ribulose-phosphate 3-epimerase | — | — |
| Pseudomonas sp. SVBP6 | 0.43 | COO64_RS19605 | | aminotransferase class V-fold PLP-dependent enzyme | 0.71 | COO64_RS22440 | rpe | ribulose-phosphate 3-epimerase | low | > 91 |
| Pseudomonas putida KT2440 | 0.43 | PP_1529 | | Probable cysteine desulfurase | 0.71 | PP_0415 | | ribulose-5-phosphate 3-epimerase | — | — |
| Pseudomonas simiae WCS417 | 0.43 | PS417_06175 | | cysteine sulfinate desulfinase | 0.71 | PS417_25735 | | ribulose-phosphate 3-epimerase | — | — |
| Pseudomonas protegens RBAN4 | 0.43 | FABNJH_06040 | sufS | cysteine desulfurase | 0.70 | FABNJH_28355 | rpe | ribulose-phosphate 3-epimerase | — | — |
| Pseudomonas orientalis W4I3 | 0.43 | QF045_RS09020 | | cysteine desulfurase | 0.70 | QF045_RS00135 | | ribulose-phosphate 3-epimerase | — | — |
| Pseudomonas sp. DMC3 | 0.42 | GFF2046 | | Cysteine desulfurase SufS | 0.69 | GFF22 | | Ribulose-phosphate 3-epimerase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.42 | PfGW456L13_4717 | | Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA | 0.70 | PfGW456L13_1215 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | — | — |
| Pseudomonas segetis P6 | 0.42 | ACVTMO_RS17160 | | aminotransferase class V-fold PLP-dependent enzyme | 0.71 | ACVTMO_RS04395 | rpe | ribulose-phosphate 3-epimerase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.42 | Pf1N1B4_3076 | | Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA | 0.71 | Pf1N1B4_2543 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | — | — |
| Mycobacterium tuberculosis H37Rv | 0.42 | Rv1464 | | Probable cysteine desulfurase Csd | 0.38 | Rv1408 | | Probable ribulose-phosphate 3-epimerase Rpe (PPE) (R5P3E) (pentose-5-phosphate 3-epimerase) | — | — |
| Pseudomonas aeruginosa PA14 | 0.41 | IKLFDK_18725 | | putative cysteine desulfurase | 0.70 | IKLFDK_22375 | | ribulose-phosphate 3-epimerase | — | — |
| Pseudomonas aeruginosa PUPa3 | 0.41 | NPBIFN_01319 | csd | putative cysteine desulfurase | 0.70 | NPBIFN_00621 | rpe | ribulose-phosphate 3-epimerase | — | — |
| Pseudomonas aeruginosa MRSN321 | 0.41 | PFGADD_01300 | csd | putative cysteine desulfurase | 0.70 | PFGADD_00617 | rpe | ribulose-phosphate 3-epimerase | — | — |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_1464 | | Selenocysteine lyase | 0.71 | Psest_3652 | | ribulose-phosphate 3-epimerase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.41 | Psyr_1335 | | Aminotransferase, class V | 0.71 | Psyr_4611 | | ribulose-5-phosphate 3-epimerase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.41 | Psyr_1335 | | Aminotransferase, class V | 0.71 | Psyr_4611 | | ribulose-5-phosphate 3-epimerase | — | — |
| Pseudomonas lactucae CFBP13502 | 0.40 | GEMAOFIL_01405 | | Cysteine desulfurase SufS | 0.71 | GEMAOFIL_05267 | | Ribulose-phosphate 3-epimerase | low | > 96 |
| Dinoroseobacter shibae DFL-12 | 0.40 | Dshi_1623 | | cysteine desulfurase, SufS subfamily (RefSeq) | 0.41 | Dshi_3006 | | Ribulose-phosphate 3-epimerase (RefSeq) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.40 | Pf6N2E2_3079 | | Cysteine desulfurase CsdA-CsdE (EC 2.8.1.7), main protein CsdA | 0.71 | Pf6N2E2_4820 | | Ribulose-phosphate 3-epimerase (EC 5.1.3.1) | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.40 | AO356_06075 | | cysteine sulfinate desulfinase | 0.70 | AO356_14410 | | ribulose phosphate epimerase | — | — |
| Phaeobacter inhibens DSM 17395 | 0.40 | PGA1_c15430 | | cysteine desulfurase SufS | 0.42 | PGA1_c04170 | | ribulose-phosphate 3-epimerase Rpe | — | — |
| Pseudomonas sp. RS175 | 0.38 | PFR28_00389 | | Cysteine desulfurase SufS | 0.70 | PFR28_04049 | | Ribulose-phosphate 3-epimerase | — | — |
| Bifidobacterium breve UCC2003 | 0.38 | BBR_RS15120 | | aminotransferase class V-fold PLP-dependent enzyme | 0.38 | BBR_RS15800 | | ribulose-phosphate 3-epimerase | — | — |
Not shown: 1 genomes with orthologs for CSW01_11740 only; 32 genomes with orthologs for CSW01_13285 only