Conservation of cofitness between CSW01_02430 and CSW01_12820 in Vibrio cholerae E7946 ATCC 55056

83 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02430 non-canonical purine NTP pyrophosphatase 1.0 CSW01_12820 ribosome hibernation promoting factor 0.56 5
Escherichia coli ECRC100 0.66 OKFHMN_19240 rdgB XTP/dITP diphosphatase 0.62 OKFHMN_17935 Ribosome hibernation promoting factor low > 80
Escherichia coli ECRC99 0.66 KEDOAH_08900 rdgB XTP/dITP diphosphatase 0.62 KEDOAH_10215 Ribosome hibernation promoting factor
Escherichia coli ECRC102 0.66 NIAGMN_17005 rdgB XTP/dITP diphosphatase 0.62 NIAGMN_15695 Ribosome hibernation promoting factor
Escherichia coli ECRC98 0.66 JDDGAC_22870 rdgB XTP/dITP diphosphatase 0.62 JDDGAC_21560 Ribosome hibernation promoting factor low > 86
Escherichia coli Nissle 1917 0.66 ECOLIN_RS16430 XTP/dITP diphosphatase 0.62 ECOLIN_RS18430 ribosome hibernation promoting factor low > 55
Escherichia fergusonii Becca 0.66 EFB2_00948 dITP/XTP pyrophosphatase 0.62 EFB2_00620 Ribosome hibernation promoting factor low > 86
Enterobacter asburiae PDN3 0.66 EX28DRAFT_2992 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 0.63 EX28DRAFT_3257 ribosomal subunit interface protein 0.59 6
Escherichia coli ECRC62 0.66 BNILDI_09690 rdgB XTP/dITP diphosphatase 0.62 BNILDI_01800 Ribosome hibernation promoting factor low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_00762 dITP/XTP pyrophosphatase 0.62 OHPLBJKB_00497 Ribosome hibernation promoting factor low > 73
Escherichia coli ECOR27 0.66 NOLOHH_11110 rdgB XTP/dITP diphosphatase 0.62 NOLOHH_09735 Ribosome hibernation promoting factor low > 75
Enterobacter sp. TBS_079 0.65 MPMX20_03812 dITP/XTP pyrophosphatase 0.65 MPMX20_04109 Ribosome hibernation promoting factor low > 85
Escherichia coli BW25113 0.65 b2954 yggV putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI) 0.62 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) low > 76
Escherichia coli ECOR38 0.65 HEPCGN_18545 rdgB XTP/dITP diphosphatase 0.62 HEPCGN_16810 Ribosome hibernation promoting factor 0.59 9
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF3057 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) 0.63 GFF2947 Ribosome hibernation protein YhbH 0.73 58
Escherichia coli ECRC101 0.65 MCAODC_09760 rdgB XTP/dITP diphosphatase 0.62 MCAODC_08455 Ribosome hibernation promoting factor low > 87
Rahnella sp. WP5 0.65 EX31_RS02705 XTP/dITP diphosphatase 0.66 EX31_RS12395 ribosome hibernation promoting factor low > 89
Escherichia coli BL21 0.65 ECD_02784 dITP/XTP pyrophosphatase 0.62 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers
Klebsiella michiganensis M5al 0.65 BWI76_RS24115 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 0.67 BWI76_RS25270 ribosome hibernation promoting factor low > 92
Serratia liquefaciens MT49 0.65 IAI46_21430 XTP/dITP diphosphatase 0.71 IAI46_22475 ribosome hibernation promoting factor low > 86
Dickeya dianthicola ME23 0.64 DZA65_RS18455 XTP/dITP diphosphatase 0.64 DZA65_RS01505 ribosome hibernation promoting factor low > 75
Pantoea sp. MT58 0.64 IAI47_03585 XTP/dITP diphosphatase 0.64 IAI47_17190 ribosome hibernation promoting factor low > 76
Dickeya dadantii 3937 0.64 DDA3937_RS17320 XTP/dITP diphosphatase 0.63 DDA3937_RS01525 ribosome hibernation promoting factor low > 74
Dickeya dianthicola 67-19 0.63 HGI48_RS17365 XTP/dITP diphosphatase 0.64 HGI48_RS01440 ribosome hibernation promoting factor low > 71
Erwinia tracheiphila SCR3 0.61 LU632_RS05450 XTP/dITP diphosphatase 0.64 LU632_RS21285 hpf ribosome hibernation promoting factor low > 74
Alteromonas macleodii MIT1002 0.60 MIT1002_00940 dITP/XTP pyrophosphatase 0.64 MIT1002_00826 Ribosome hibernation promoting factor low > 70
Shewanella loihica PV-4 0.60 Shew_1132 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (RefSeq) 0.59 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq)
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_0200 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 0.66 B158DRAFT_2079 ribosomal subunit interface protein low > 40
Erwinia amylovora T8 0.60 OLJFJH_08520 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 0.66 OLJFJH_07065 ribosome hibernation promoting factor low > 58
Pectobacterium carotovorum WPP14 0.59 HER17_RS03790 XTP/dITP diphosphatase 0.69 HER17_RS20065 ribosome hibernation promoting factor low > 75
Shewanella sp. ANA-3 0.59 Shewana3_1189 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (RefSeq) 0.58 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) low > 73
Shewanella oneidensis MR-1 0.58 SO3358 HAM1 protein (NCBI ptt file) 0.56 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.56 Sama_2482 Ham1-like protein (RefSeq) 0.64 Sama_3089 ribosomal subunit interface protein (RefSeq) low > 62
Marinobacter adhaerens HP15 0.56 HP15_281 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 0.67 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA low > 73
Pseudomonas syringae pv. syringae B728a 0.54 Psyr_0472 Ham1-like protein 0.53 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.54 Psyr_0472 Ham1-like protein 0.53 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Rhodanobacter sp000427505 FW510-R12 0.53 LRK53_RS16800 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 0.43 LRK53_RS15710 ribosome-associated translation inhibitor RaiA low > 60
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_12155 rdgB RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 0.43 OKGIIK_02260 raiA ribosomal subunit interface protein low > 52
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_13395 non-canonical purine NTP pyrophosphatase 0.55 AO356_07040 hypothetical protein low > 104
Pseudomonas sp. RS175 0.53 PFR28_04248 dITP/XTP pyrophosphatase 0.54 PFR28_00172 Ribosome hibernation promoting factor low > 88
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_4594 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) 0.55 Pf6N2E2_3268 Ribosome hibernation protein YhbH low > 103
Pseudomonas sp. SVBP6 0.52 COO64_RS12970 rdgB RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 0.54 COO64_RS04280 hpf ribosome hibernation-promoting factor, HPF/YfiA family low > 93
Pseudomonas sp. DMC3 0.52 GFF215 dITP/XTP pyrophosphatase 0.58 GFF1827 Ribosome hibernation promoting factor low > 89
Pseudomonas simiae WCS417 0.52 PS417_26755 nucleoside-triphosphate diphosphatase 0.54 PS417_04340 ribosome hibernation promoting factor HPF low > 88
Xanthomonas campestris pv. campestris strain 8004 0.52 Xcc-8004.1223.1 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) 0.36 Xcc-8004.1661.1 Ribosome hibernation protein YhbH low > 74
Pseudomonas putida KT2440 0.52 PP_5100 dITP/XTP pyrophosphatase 0.55 PP_0951 Ribosome hibernation promoting factor low > 96
Pseudomonas aeruginosa PA14 0.52 IKLFDK_23490 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 0.58 IKLFDK_01765 Sigma 54 modulation protein / S30EA ribosomal protein low > 101
Pseudomonas sp. BP01 0.52 JOY50_RS20880 rdgB RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 0.57 JOY50_RS11125 hpf ribosome hibernation-promoting factor, HPF/YfiA family low > 84
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS28400 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 0.54 PFLU_RS04395 ribosome-associated translation inhibitor RaiA 0.15 60
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_08195 non-canonical purine NTP pyrophosphatase 0.55 AO353_05185 hypothetical protein low > 101
Pseudomonas fluorescens SBW25 0.51 PFLU_RS28400 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 0.54 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Paraburkholderia sabiae LMG 24235 0.51 QEN71_RS03640 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 0.39 QEN71_RS01750 ribosome-associated translation inhibitor RaiA low > 153
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_04009 XTP/dITP diphosphohydrolase 0.38 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P low > 103
Lysobacter sp. OAE881 0.51 ABIE51_RS17295 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 0.34 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA low > 62
Pseudomonas fluorescens GW456-L13 0.51 PfGW456L13_1004 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) 0.55 PfGW456L13_5015 Ribosome hibernation protein YhbH low > 87
Pseudomonas fluorescens FW300-N1B4 0.51 Pf1N1B4_2335 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) 0.55 Pf1N1B4_1081 Ribosome hibernation protein YhbH low > 87
Paraburkholderia graminis OAS925 0.51 ABIE53_003235 XTP/dITP diphosphohydrolase 0.39 ABIE53_000717 putative sigma-54 modulation protein low > 113
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS15330 nucleoside-triphosphate diphosphatase 0.38 BPHYT_RS02900 ribosome hibernation promoting factor low > 109
Pseudomonas stutzeri RCH2 0.50 Psest_0277 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family 0.59 Psest_3314 ribosomal subunit interface protein low > 67
Dyella japonica UNC79MFTsu3.2 0.50 ABZR86_RS11905 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 0.39 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA low > 74
Pseudomonas sp. S08-1 0.50 OH686_11015 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 0.59 OH686_08550 Ribosome hibernation promoting factor Hpf low > 80
Rhodanobacter denitrificans MT42 0.49 LRK55_RS11465 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 0.43 LRK55_RS12570 ribosome-associated translation inhibitor RaiA low > 63
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS11740 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 0.43 LRK54_RS12870 ribosome-associated translation inhibitor RaiA low > 59
Dechlorosoma suillum PS 0.48 Dsui_0492 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family 0.49 Dsui_0703 ribosomal subunit interface protein low > 51
Acinetobacter radioresistens SK82 0.48 MPMX26_00400 dITP/XTP pyrophosphatase 0.30 MPMX26_02591 Ribosome hibernation promoting factor
Methylophilus sp. DMC18 0.46 GFF2137 dITP/XTP pyrophosphatase 0.52 GFF2268 Ribosome hibernation promoting factor low > 43
Ralstonia solanacearum UW163 0.45 UW163_RS10370 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 0.38 UW163_RS02415 ribosomal subunit interface protein
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS03350 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 0.38 RALBFv3_RS11165 ribosomal subunit interface protein low > 76
Ralstonia sp. UNC404CL21Col 0.45 ABZR87_RS15260 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 0.38 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA 0.31 7
Ralstonia solanacearum PSI07 0.44 RPSI07_RS13835 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 0.39 RPSI07_RS22135 ribosomal subunit interface protein
Castellaniella sp019104865 MT123 0.44 ABCV34_RS03520 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 0.45 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA low > 48
Ralstonia solanacearum GMI1000 0.43 RS_RS10835 non-canonical purine NTP pyrophosphatase 0.38 RS_RS02015 ribosomal subunit interface protein low > 80
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS04885 nucleoside-triphosphate diphosphatase 0.42 RR42_RS02080 ribosome hibernation promoting factor low > 128
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF3255 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) 0.38 GFF2612 Ribosome hibernation protein YhbH low > 90
Variovorax sp. SCN45 0.36 GFF2382 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.66) 0.45 GFF7293 Ribosome hibernation promoting factor Hpf low > 127
Variovorax sp. OAS795 0.35 ABID97_RS23635 non-canonical purine NTP pyrophosphatase 0.44 ABID97_RS04490 ribosome-associated translation inhibitor RaiA low > 91
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3671 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) 0.42 Ac3H11_681 Ribosome hibernation protein YhbH low > 79
Pedobacter sp. GW460-11-11-14-LB5 0.29 CA265_RS24990 non-canonical purine NTP pyrophosphatase 0.25 CA265_RS02840 30S ribosomal protein S30 low > 88
Phocaeicola dorei CL03T12C01 0.28 ABI39_RS05750 non-canonical purine NTP diphosphatase 0.33 ABI39_RS03830 ribosome-associated translation inhibitor RaiA low > 72
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS06565 non-canonical purine NTP diphosphatase 0.27 HMPREF1078_RS10880 ribosome-associated translation inhibitor RaiA low > 61
Bacteroides stercoris CC31F 0.27 HMPREF1181_RS01925 non-canonical purine NTP diphosphatase 0.27 HMPREF1181_RS00620 ribosome-associated translation inhibitor RaiA low > 56
Phocaeicola vulgatus CL09T03C04 0.27 HMPREF1058_RS11235 non-canonical purine NTP diphosphatase 0.33 HMPREF1058_RS09440 ribosome-associated translation inhibitor RaiA low > 67
Bacteroides thetaiotaomicron VPI-5482 0.25 BT3128 putative xanthosine triphosphate pyrophosphatase (NCBI ptt file) 0.25 BT2741 sigma-54 modulation protein (NCBI ptt file) low > 81
Bacteroides ovatus ATCC 8483 0.25 BACOVA_02837 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 0.27 BACOVA_01049 hypothetical protein low > 94

Not shown: 29 genomes with orthologs for CSW01_02430 only; 0 genomes with orthologs for CSW01_12820 only