Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_02430 | | non-canonical purine NTP pyrophosphatase | 1.0 | CSW01_12820 | | ribosome hibernation promoting factor | 0.56 | 5 |
Escherichia coli ECRC100 | 0.66 | OKFHMN_19240 | rdgB | XTP/dITP diphosphatase | 0.62 | OKFHMN_17935 | | Ribosome hibernation promoting factor | low | > 80 |
Escherichia coli ECRC99 | 0.66 | KEDOAH_08900 | rdgB | XTP/dITP diphosphatase | 0.62 | KEDOAH_10215 | | Ribosome hibernation promoting factor | — | — |
Escherichia coli ECRC102 | 0.66 | NIAGMN_17005 | rdgB | XTP/dITP diphosphatase | 0.62 | NIAGMN_15695 | | Ribosome hibernation promoting factor | — | — |
Escherichia coli ECRC98 | 0.66 | JDDGAC_22870 | rdgB | XTP/dITP diphosphatase | 0.62 | JDDGAC_21560 | | Ribosome hibernation promoting factor | low | > 86 |
Escherichia coli Nissle 1917 | 0.66 | ECOLIN_RS16430 | | XTP/dITP diphosphatase | 0.62 | ECOLIN_RS18430 | | ribosome hibernation promoting factor | low | > 55 |
Escherichia fergusonii Becca | 0.66 | EFB2_00948 | | dITP/XTP pyrophosphatase | 0.62 | EFB2_00620 | | Ribosome hibernation promoting factor | low | > 86 |
Enterobacter asburiae PDN3 | 0.66 | EX28DRAFT_2992 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.63 | EX28DRAFT_3257 | | ribosomal subunit interface protein | 0.59 | 6 |
Escherichia coli ECRC62 | 0.66 | BNILDI_09690 | rdgB | XTP/dITP diphosphatase | 0.62 | BNILDI_01800 | | Ribosome hibernation promoting factor | low | > 75 |
Escherichia coli HS(pFamp)R (ATCC 700891) | 0.66 | OHPLBJKB_00762 | | dITP/XTP pyrophosphatase | 0.62 | OHPLBJKB_00497 | | Ribosome hibernation promoting factor | low | > 73 |
Escherichia coli ECOR27 | 0.66 | NOLOHH_11110 | rdgB | XTP/dITP diphosphatase | 0.62 | NOLOHH_09735 | | Ribosome hibernation promoting factor | low | > 75 |
Enterobacter sp. TBS_079 | 0.65 | MPMX20_03812 | | dITP/XTP pyrophosphatase | 0.65 | MPMX20_04109 | | Ribosome hibernation promoting factor | low | > 85 |
Escherichia coli BW25113 | 0.65 | b2954 | yggV | putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI) | 0.62 | b3203 | yhbH | predicted ribosome-associated, sigma 54 modulation protein (NCBI) | low | > 76 |
Escherichia coli ECOR38 | 0.65 | HEPCGN_18545 | rdgB | XTP/dITP diphosphatase | 0.62 | HEPCGN_16810 | | Ribosome hibernation promoting factor | 0.59 | 9 |
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.65 | GFF3057 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.63 | GFF2947 | | Ribosome hibernation protein YhbH | 0.73 | 58 |
Escherichia coli ECRC101 | 0.65 | MCAODC_09760 | rdgB | XTP/dITP diphosphatase | 0.62 | MCAODC_08455 | | Ribosome hibernation promoting factor | low | > 87 |
Rahnella sp. WP5 | 0.65 | EX31_RS02705 | | XTP/dITP diphosphatase | 0.66 | EX31_RS12395 | | ribosome hibernation promoting factor | low | > 89 |
Escherichia coli BL21 | 0.65 | ECD_02784 | | dITP/XTP pyrophosphatase | 0.62 | ECD_03068 | | ribosome hibernation promoting factor HPF; stabilizes 100S dimers | — | — |
Klebsiella michiganensis M5al | 0.65 | BWI76_RS24115 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.67 | BWI76_RS25270 | | ribosome hibernation promoting factor | low | > 92 |
Serratia liquefaciens MT49 | 0.65 | IAI46_21430 | | XTP/dITP diphosphatase | 0.71 | IAI46_22475 | | ribosome hibernation promoting factor | low | > 86 |
Dickeya dianthicola ME23 | 0.64 | DZA65_RS18455 | | XTP/dITP diphosphatase | 0.64 | DZA65_RS01505 | | ribosome hibernation promoting factor | low | > 75 |
Pantoea sp. MT58 | 0.64 | IAI47_03585 | | XTP/dITP diphosphatase | 0.64 | IAI47_17190 | | ribosome hibernation promoting factor | low | > 76 |
Dickeya dadantii 3937 | 0.64 | DDA3937_RS17320 | | XTP/dITP diphosphatase | 0.63 | DDA3937_RS01525 | | ribosome hibernation promoting factor | low | > 74 |
Dickeya dianthicola 67-19 | 0.63 | HGI48_RS17365 | | XTP/dITP diphosphatase | 0.64 | HGI48_RS01440 | | ribosome hibernation promoting factor | low | > 71 |
Erwinia tracheiphila SCR3 | 0.61 | LU632_RS05450 | | XTP/dITP diphosphatase | 0.64 | LU632_RS21285 | hpf | ribosome hibernation promoting factor | low | > 74 |
Alteromonas macleodii MIT1002 | 0.60 | MIT1002_00940 | | dITP/XTP pyrophosphatase | 0.64 | MIT1002_00826 | | Ribosome hibernation promoting factor | low | > 70 |
Shewanella loihica PV-4 | 0.60 | Shew_1132 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (RefSeq) | 0.59 | Shew_3312 | | sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) | — | — |
Kangiella aquimarina DSM 16071 | 0.60 | B158DRAFT_0200 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.66 | B158DRAFT_2079 | | ribosomal subunit interface protein | low | > 40 |
Erwinia amylovora T8 | 0.60 | OLJFJH_08520 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.66 | OLJFJH_07065 | | ribosome hibernation promoting factor | low | > 58 |
Pectobacterium carotovorum WPP14 | 0.59 | HER17_RS03790 | | XTP/dITP diphosphatase | 0.69 | HER17_RS20065 | | ribosome hibernation promoting factor | low | > 75 |
Shewanella sp. ANA-3 | 0.59 | Shewana3_1189 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (RefSeq) | 0.58 | Shewana3_0671 | | sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) | low | > 73 |
Shewanella oneidensis MR-1 | 0.58 | SO3358 | | HAM1 protein (NCBI ptt file) | 0.56 | SO3962 | yfiA-3 | ribosomal subunit interface protein (NCBI ptt file) | low | > 76 |
Shewanella amazonensis SB2B | 0.56 | Sama_2482 | | Ham1-like protein (RefSeq) | 0.64 | Sama_3089 | | ribosomal subunit interface protein (RefSeq) | low | > 62 |
Marinobacter adhaerens HP15 | 0.56 | HP15_281 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.67 | HP15_2443 | | sigma 54 modulation protein/ribosomal protein S30EA | low | > 73 |
Pseudomonas syringae pv. syringae B728a | 0.54 | Psyr_0472 | | Ham1-like protein | 0.53 | Psyr_4148 | | sigma 54 modulation protein / SSU ribosomal protein S30P | low | > 86 |
Pseudomonas syringae pv. syringae B728a ΔmexB | 0.54 | Psyr_0472 | | Ham1-like protein | 0.53 | Psyr_4148 | | sigma 54 modulation protein / SSU ribosomal protein S30P | low | > 86 |
Rhodanobacter sp000427505 FW510-R12 | 0.53 | LRK53_RS16800 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.43 | LRK53_RS15710 | | ribosome-associated translation inhibitor RaiA | low | > 60 |
Rhodanobacter sp. FW510-T8 | 0.53 | OKGIIK_12155 | rdgB | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.43 | OKGIIK_02260 | raiA | ribosomal subunit interface protein | low | > 52 |
Pseudomonas fluorescens FW300-N2C3 | 0.53 | AO356_13395 | | non-canonical purine NTP pyrophosphatase | 0.55 | AO356_07040 | | hypothetical protein | low | > 104 |
Pseudomonas sp. RS175 | 0.53 | PFR28_04248 | | dITP/XTP pyrophosphatase | 0.54 | PFR28_00172 | | Ribosome hibernation promoting factor | low | > 88 |
Pseudomonas fluorescens FW300-N2E2 | 0.52 | Pf6N2E2_4594 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.55 | Pf6N2E2_3268 | | Ribosome hibernation protein YhbH | low | > 103 |
Pseudomonas sp. SVBP6 | 0.52 | COO64_RS12970 | rdgB | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.54 | COO64_RS04280 | hpf | ribosome hibernation-promoting factor, HPF/YfiA family | low | > 93 |
Pseudomonas sp. DMC3 | 0.52 | GFF215 | | dITP/XTP pyrophosphatase | 0.58 | GFF1827 | | Ribosome hibernation promoting factor | low | > 89 |
Pseudomonas simiae WCS417 | 0.52 | PS417_26755 | | nucleoside-triphosphate diphosphatase | 0.54 | PS417_04340 | | ribosome hibernation promoting factor HPF | low | > 88 |
Xanthomonas campestris pv. campestris strain 8004 | 0.52 | Xcc-8004.1223.1 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.36 | Xcc-8004.1661.1 | | Ribosome hibernation protein YhbH | low | > 74 |
Pseudomonas putida KT2440 | 0.52 | PP_5100 | | dITP/XTP pyrophosphatase | 0.55 | PP_0951 | | Ribosome hibernation promoting factor | low | > 96 |
Pseudomonas aeruginosa PA14 | 0.52 | IKLFDK_23490 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.58 | IKLFDK_01765 | | Sigma 54 modulation protein / S30EA ribosomal protein | low | > 101 |
Pseudomonas sp. BP01 | 0.52 | JOY50_RS20880 | rdgB | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.57 | JOY50_RS11125 | hpf | ribosome hibernation-promoting factor, HPF/YfiA family | low | > 84 |
Pseudomonas fluorescens SBW25-INTG | 0.51 | PFLU_RS28400 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.54 | PFLU_RS04395 | | ribosome-associated translation inhibitor RaiA | 0.15 | 60 |
Pseudomonas fluorescens FW300-N2E3 | 0.51 | AO353_08195 | | non-canonical purine NTP pyrophosphatase | 0.55 | AO353_05185 | | hypothetical protein | low | > 101 |
Pseudomonas fluorescens SBW25 | 0.51 | PFLU_RS28400 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.54 | PFLU_RS04395 | | ribosome-associated translation inhibitor RaiA | low | > 109 |
Paraburkholderia sabiae LMG 24235 | 0.51 | QEN71_RS03640 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.39 | QEN71_RS01750 | | ribosome-associated translation inhibitor RaiA | low | > 153 |
Paraburkholderia bryophila 376MFSha3.1 | 0.51 | H281DRAFT_04009 | | XTP/dITP diphosphohydrolase | 0.38 | H281DRAFT_01928 | | sigma 54 modulation protein /SSU ribosomal protein S30P | low | > 103 |
Lysobacter sp. OAE881 | 0.51 | ABIE51_RS17295 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.34 | ABIE51_RS15960 | | ribosome-associated translation inhibitor RaiA | low | > 62 |
Pseudomonas fluorescens GW456-L13 | 0.51 | PfGW456L13_1004 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.55 | PfGW456L13_5015 | | Ribosome hibernation protein YhbH | low | > 87 |
Pseudomonas fluorescens FW300-N1B4 | 0.51 | Pf1N1B4_2335 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.55 | Pf1N1B4_1081 | | Ribosome hibernation protein YhbH | low | > 87 |
Paraburkholderia graminis OAS925 | 0.51 | ABIE53_003235 | | XTP/dITP diphosphohydrolase | 0.39 | ABIE53_000717 | | putative sigma-54 modulation protein | low | > 113 |
Burkholderia phytofirmans PsJN | 0.50 | BPHYT_RS15330 | | nucleoside-triphosphate diphosphatase | 0.38 | BPHYT_RS02900 | | ribosome hibernation promoting factor | low | > 109 |
Pseudomonas stutzeri RCH2 | 0.50 | Psest_0277 | | non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family | 0.59 | Psest_3314 | | ribosomal subunit interface protein | low | > 67 |
Dyella japonica UNC79MFTsu3.2 | 0.50 | ABZR86_RS11905 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.39 | ABZR86_RS19810 | | ribosome-associated translation inhibitor RaiA | low | > 74 |
Pseudomonas sp. S08-1 | 0.50 | OH686_11015 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.59 | OH686_08550 | | Ribosome hibernation promoting factor Hpf | low | > 80 |
Rhodanobacter denitrificans MT42 | 0.49 | LRK55_RS11465 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.43 | LRK55_RS12570 | | ribosome-associated translation inhibitor RaiA | low | > 63 |
Rhodanobacter denitrificans FW104-10B01 | 0.49 | LRK54_RS11740 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.43 | LRK54_RS12870 | | ribosome-associated translation inhibitor RaiA | low | > 59 |
Dechlorosoma suillum PS | 0.48 | Dsui_0492 | | non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family | 0.49 | Dsui_0703 | | ribosomal subunit interface protein | low | > 51 |
Acinetobacter radioresistens SK82 | 0.48 | MPMX26_00400 | | dITP/XTP pyrophosphatase | 0.30 | MPMX26_02591 | | Ribosome hibernation promoting factor | — | — |
Methylophilus sp. DMC18 | 0.46 | GFF2137 | | dITP/XTP pyrophosphatase | 0.52 | GFF2268 | | Ribosome hibernation promoting factor | low | > 43 |
Ralstonia solanacearum UW163 | 0.45 | UW163_RS10370 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.38 | UW163_RS02415 | | ribosomal subunit interface protein | — | — |
Ralstonia solanacearum IBSBF1503 | 0.45 | RALBFv3_RS03350 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.38 | RALBFv3_RS11165 | | ribosomal subunit interface protein | low | > 76 |
Ralstonia sp. UNC404CL21Col | 0.45 | ABZR87_RS15260 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.38 | ABZR87_RS07055 | | ribosome-associated translation inhibitor RaiA | 0.31 | 7 |
Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS13835 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.39 | RPSI07_RS22135 | | ribosomal subunit interface protein | — | — |
Castellaniella sp019104865 MT123 | 0.44 | ABCV34_RS03520 | | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | 0.45 | ABCV34_RS14345 | | ribosome-associated translation inhibitor RaiA | low | > 48 |
Ralstonia solanacearum GMI1000 | 0.43 | RS_RS10835 | | non-canonical purine NTP pyrophosphatase | 0.38 | RS_RS02015 | | ribosomal subunit interface protein | low | > 80 |
Cupriavidus basilensis FW507-4G11 | 0.43 | RR42_RS04885 | | nucleoside-triphosphate diphosphatase | 0.42 | RR42_RS02080 | | ribosome hibernation promoting factor | low | > 128 |
Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.38 | GFF3255 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.38 | GFF2612 | | Ribosome hibernation protein YhbH | low | > 90 |
Variovorax sp. SCN45 | 0.36 | GFF2382 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.66) | 0.45 | GFF7293 | | Ribosome hibernation promoting factor Hpf | low | > 127 |
Variovorax sp. OAS795 | 0.35 | ABID97_RS23635 | | non-canonical purine NTP pyrophosphatase | 0.44 | ABID97_RS04490 | | ribosome-associated translation inhibitor RaiA | low | > 91 |
Acidovorax sp. GW101-3H11 | 0.35 | Ac3H11_3671 | | Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) | 0.42 | Ac3H11_681 | | Ribosome hibernation protein YhbH | low | > 79 |
Pedobacter sp. GW460-11-11-14-LB5 | 0.29 | CA265_RS24990 | | non-canonical purine NTP pyrophosphatase | 0.25 | CA265_RS02840 | | 30S ribosomal protein S30 | low | > 88 |
Phocaeicola dorei CL03T12C01 | 0.28 | ABI39_RS05750 | | non-canonical purine NTP diphosphatase | 0.33 | ABI39_RS03830 | | ribosome-associated translation inhibitor RaiA | low | > 72 |
Parabacteroides merdae CL09T00C40 | 0.27 | HMPREF1078_RS06565 | | non-canonical purine NTP diphosphatase | 0.27 | HMPREF1078_RS10880 | | ribosome-associated translation inhibitor RaiA | low | > 61 |
Bacteroides stercoris CC31F | 0.27 | HMPREF1181_RS01925 | | non-canonical purine NTP diphosphatase | 0.27 | HMPREF1181_RS00620 | | ribosome-associated translation inhibitor RaiA | low | > 56 |
Phocaeicola vulgatus CL09T03C04 | 0.27 | HMPREF1058_RS11235 | | non-canonical purine NTP diphosphatase | 0.33 | HMPREF1058_RS09440 | | ribosome-associated translation inhibitor RaiA | low | > 67 |
Bacteroides thetaiotaomicron VPI-5482 | 0.25 | BT3128 | | putative xanthosine triphosphate pyrophosphatase (NCBI ptt file) | 0.25 | BT2741 | | sigma-54 modulation protein (NCBI ptt file) | low | > 81 |
Bacteroides ovatus ATCC 8483 | 0.25 | BACOVA_02837 | | non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family | 0.27 | BACOVA_01049 | | hypothetical protein | low | > 94 |
Not shown: 29 genomes with orthologs for CSW01_02430 only; 0 genomes with orthologs for CSW01_12820 only