Conservation of cofitness between CSW01_00850 and CSW01_11870 in Vibrio cholerae E7946 ATCC 55056

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00850 multidrug resistance protein 1.0 CSW01_11870 DNA repair protein RadA 0.66 9
Shewanella sp. ANA-3 0.72 Shewana3_0371 acriflavin resistance protein (RefSeq) 0.74 Shewana3_1049 DNA repair protein RadA (RefSeq) low > 73
Shewanella amazonensis SB2B 0.71 Sama_3269 putative multidrug resistance protein (RefSeq) 0.73 Sama_0981 DNA repair protein RadA (RefSeq) low > 62
Rhodospirillum rubrum S1H 0.49 Rru_A3699 Acriflavin resistance protein (NCBI) 0.39 Rru_A0406 DNA repair protein RadA (NCBI) low > 58
Azospirillum brasilense Sp245 0.49 AZOBR_RS31320 acriflavine resistance protein B 0.42 AZOBR_RS08320 DNA repair protein RadA low > 97
Magnetospirillum magneticum AMB-1 0.48 AMB_RS17260 acriflavine resistance protein B 0.41 AMB_RS10555 DNA repair protein RadA low > 64
Pseudomonas segetis P6 0.48 MPMX49_03771 Multidrug efflux pump subunit AcrB 0.62 MPMX49_03982 DNA repair protein RadA low > 75
Rhodopseudomonas palustris CGA009 0.48 TX73_019545 MexW/MexI family multidrug efflux RND transporter permease subunit 0.41 TX73_015980 DNA repair protein RadA low > 86
Azospirillum sp. SherDot2 0.48 MPMX19_05610 Efflux pump membrane transporter BepE 0.41 MPMX19_00904 DNA repair protein RadA 0.45 10
Pseudomonas simiae WCS417 0.47 PS417_22755 acriflavine resistance protein B 0.63 PS417_24305 DNA repair protein RadA low > 88
Pseudomonas fluorescens SBW25 0.47 PFLU_RS24405 multidrug efflux RND transporter permease subunit 0.63 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS24405 multidrug efflux RND transporter permease subunit 0.63 PFLU_RS26230 DNA repair protein RadA low > 109
Pseudomonas sp. RS175 0.47 PFR28_03330 Multidrug efflux pump subunit AcrB 0.63 PFR28_03792 DNA repair protein RadA low > 88
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_18440 acriflavine resistance protein B 0.63 AO356_15680 DNA repair protein RadA 0.39 30
Pseudomonas sp. S08-1 0.47 OH686_17360 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) 0.62 OH686_16185 DNA repair protein RadA low > 80
Pseudomonas fluorescens FW300-N2E2 0.47 Pf6N2E2_5614 RND multidrug efflux transporter; Acriflavin resistance protein 0.63 Pf6N2E2_5076 DNA repair protein RadA 0.21 22
Pseudomonas sp. BP01 0.47 JOY50_RS14955 multidrug efflux RND transporter permease subunit 0.62 JOY50_RS15685 radA DNA repair protein RadA low > 84
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_720 RND multidrug efflux transporter; Acriflavin resistance protein 0.63 Pf1N1B4_2768 DNA repair protein RadA low > 87
Pseudomonas putida KT2440 0.46 PP_0906 putative Multidrug efflux RND transporter 0.62 PP_4644 DNA repair enzyme low > 96
Pseudomonas sp. SVBP6 0.46 COO64_RS12055 multidrug efflux RND transporter permease subunit 0.62 COO64_RS02920 radA DNA repair protein RadA low > 93
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_04000 acriflavine resistance protein B 0.63 AO353_13980 DNA repair protein RadA low > 101
Pseudomonas aeruginosa PA14 0.46 IKLFDK_02225 multidrug efflux RND transporter permease subunit MexW 0.64 IKLFDK_00465 DNA repair protein RadA low > 98
Pseudomonas aeruginosa PUPa3 0.46 DQ20_RS57065 mexW;inference=COORDINATES multidrug efflux RND transporter permease subunit MexW 0.64 DQ20_RS55850 radA;go_function=ATP DNA repair protein RadA low > 101
Pseudomonas aeruginosa MRSN321 0.46 DY961_RS24615 mexW;inference=COORDINATES multidrug efflux RND transporter permease subunit MexW 0.64 DY961_RS23385 radA;go_function=ATP DNA repair protein RadA low > 100
Pseudomonas sp. DMC3 0.46 GFF5069 Multidrug efflux pump subunit AcrB 0.63 GFF3954 DNA repair protein RadA low > 89
Marinobacter adhaerens HP15 0.46 HP15_3262 multidrug resistance protein 0.68 HP15_487 DNA repair protein RadA low > 73
Pseudomonas fluorescens GW456-L13 0.45 PfGW456L13_1771 RND multidrug efflux transporter; Acriflavin resistance protein 0.63 PfGW456L13_1442 DNA repair protein RadA low > 87
Pseudomonas stutzeri RCH2 0.45 Psest_1153 Cation/multidrug efflux pump 0.62 Psest_3401 DNA repair protein RadA low > 67
Variovorax sp. SCN45 0.45 GFF3509 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) => MexI of MexHI-OpmD system 0.51 GFF5087 DNA repair protein RadA low > 127
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS26025 efflux RND transporter permease subunit 0.54 QEN71_RS06320 DNA repair protein RadA low > 153
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS29560 acriflavine resistance protein B 0.52 BPHYT_RS12235 DNA repair protein RadA low > 109
Xanthobacter sp. DMC5 0.40 GFF2738 Efflux pump membrane transporter BepE 0.41 GFF1870 DNA repair protein RadA — —
Dechlorosoma suillum PS 0.35 Dsui_1555 cation/multidrug efflux pump 0.50 Dsui_2413 DNA repair protein RadA low > 51
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF4261 RND multidrug efflux transporter; Acriflavin resistance protein 0.48 GFF1833 DNA repair protein RadA low > 90
Acidovorax sp. GW101-3H11 0.34 Ac3H11_482 RND multidrug efflux transporter; Acriflavin resistance protein 0.51 Ac3H11_3371 DNA repair protein RadA low > 79
Desulfovibrio vulgaris Hildenborough JW710 0.25 DVU0061 multidrug resistance protein, putative (TIGR) 0.35 DVU1590 radA DNA repair protein RadA (TIGR) low > 55
Acinetobacter baumannii LAC-4 0.25 RR41_RS03865 multidrug efflux RND transporter permease subunit AdeJ 0.58 RR41_RS04415 DNA repair protein RadA — —
Synechococcus elongatus PCC 7942 0.24 Synpcc7942_2369 acrF Hydrophobe/amphiphile efflux-1 HAE1 0.41 Synpcc7942_1452 radA DNA repair protein RadA low > 38
Acinetobacter radioresistens SK82 0.24 MPMX26_00689 Multidrug resistance protein MexB 0.57 MPMX26_02235 DNA repair protein RadA low > 36
Methylophilus sp. DMC18 0.24 GFF1649 Efflux pump membrane transporter BepE 0.55 GFF1046 DNA repair protein RadA low > 43
Enterobacter asburiae PDN3 0.24 EX28DRAFT_2496 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.81 EX28DRAFT_3597 DNA repair protein RadA low > 76
Klebsiella michiganensis M5al 0.24 BWI76_RS06775 multidrug efflux RND transporter permease subunit 0.82 BWI76_RS04165 DNA repair protein RadA low > 92
Escherichia coli BW25113 0.24 b2470 acrD aminoglycoside/multidrug efflux system (NCBI) 0.83 b4389 radA predicted repair protein (NCBI) low > 76
Escherichia coli ECRC62 0.24 BNILDI_12460 acrD multidrug efflux RND transporter permease AcrD 0.82 BNILDI_08075 radA DNA repair protein RadA low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF4246 RND efflux system, inner membrane transporter CmeB 0.82 GFF1057 DNA repair protein RadA low > 78
Escherichia fergusonii Becca 0.24 EFB2_01418 Multidrug efflux pump subunit AcrB 0.83 EFB2_04057 DNA repair protein RadA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_01261 Multidrug efflux pump subunit AcrB 0.83 OHPLBJKB_03672 DNA repair protein RadA low > 74
Escherichia coli ECOR38 0.24 HEPCGN_21140 acrD multidrug efflux RND transporter permease AcrD 0.83 HEPCGN_09195 radA DNA repair protein RadA low > 88
Escherichia coli BL21 0.24 ECD_02361 aminoglycoside/multidrug efflux system 0.83 ECD_04265 DNA repair protein low > 61
Enterobacter sp. TBS_079 0.24 MPMX20_01064 Multidrug efflux pump subunit AcrB 0.81 MPMX20_00694 DNA repair protein RadA low > 85
Escherichia coli ECRC100 0.24 OKFHMN_21970 acrD multidrug efflux RND transporter permease AcrD 0.82 OKFHMN_11195 radA DNA repair protein RadA low > 79
Escherichia coli ECRC102 0.24 NIAGMN_19740 acrD multidrug efflux RND transporter permease AcrD 0.82 NIAGMN_09045 radA DNA repair protein RadA low > 80
Escherichia coli Nissle 1917 0.24 ECOLIN_RS14090 multidrug efflux RND transporter permease AcrD 0.83 ECOLIN_RS25190 DNA repair protein RadA low > 55
Escherichia coli ECRC98 0.24 JDDGAC_25915 acrD multidrug efflux RND transporter permease AcrD 0.82 JDDGAC_14790 radA DNA repair protein RadA low > 87
Escherichia coli ECRC99 0.24 KEDOAH_06250 acrD multidrug efflux RND transporter permease AcrD 0.82 KEDOAH_16960 radA DNA repair protein RadA — —
Escherichia coli ECRC101 0.24 MCAODC_12500 acrD multidrug efflux RND transporter permease AcrD 0.82 MCAODC_01710 radA DNA repair protein RadA low > 87
Escherichia coli ECOR27 0.24 NOLOHH_13650 acrD multidrug efflux RND transporter permease AcrD 0.82 NOLOHH_03520 radA DNA repair protein RadA low > 76
Klebsiella pneumoniae MKP103 0.24 KDGMDA_14835 acriflavine resistance protein B 0.82 KDGMDA_12435 DNA repair protein RadA low > 95
Paraburkholderia graminis OAS925 0.24 ABIE53_005788 multidrug efflux pump 0.53 ABIE53_002526 DNA repair protein RadA/Sms low > 113
Pseudomonas orientalis W4I3 0.24 QF045_RS16760 efflux RND transporter permease subunit 0.63 QF045_RS26600 DNA repair protein RadA low > 93
Desulfovibrio vulgaris Miyazaki F 0.24 DvMF_2163 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family (RefSeq) 0.36 DvMF_0471 DNA repair protein RadA (RefSeq) low > 51
Pseudomonas syringae pv. syringae B728a 0.23 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.63 Psyr_4275 DNA replication and repair protein RadA low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.23 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.63 Psyr_4275 DNA replication and repair protein RadA low > 86
Bosea sp. OAE506 0.23 ABIE41_RS01595 efflux RND transporter permease subunit 0.43 ABIE41_RS17800 DNA repair protein RadA low > 77
Rhodanobacter sp. FW510-T8 0.23 OKGIIK_11990 acrB acriflavine resistance protein B 0.59 OKGIIK_09580 radA DNA repair protein RadA low > 53
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_00850 cation/multidrug efflux pump acrB2 0.40 CCNA_01732 DNA repair protein RadA low > 67
Caulobacter crescentus NA1000 0.23 CCNA_00850 cation/multidrug efflux pump acrB2 0.40 CCNA_01732 DNA repair protein RadA low > 66
Dyella japonica UNC79MFTsu3.2 0.23 ABZR86_RS11745 efflux RND transporter permease subunit 0.57 ABZR86_RS08845 DNA repair protein RadA low > 74
Pseudomonas lactucae CFBP13502 0.23 GEMAOFIL_03223 multidrug efflux RND transporter permease subunit OqxB9 0.63 GEMAOFIL_05014 DNA repair protein RadA low > 96
Rahnella sp. WP5 0.23 EX31_RS22470 multidrug efflux RND transporter permease subunit 0.81 EX31_RS04030 DNA repair protein RadA low > 89
Serratia liquefaciens MT49 0.23 IAI46_18690 multidrug efflux RND transporter permease AcrD 0.79 IAI46_02945 DNA repair protein RadA low > 87
Rhodanobacter denitrificans MT42 0.23 LRK55_RS11630 efflux RND transporter permease subunit 0.58 LRK55_RS02280 DNA repair protein RadA low > 63
Herbaspirillum seropedicae SmR1 0.23 HSERO_RS23055 multidrug transporter 0.52 HSERO_RS10745 DNA repair protein RadA 0.23 54
Cellulophaga baltica 18 0.23 M666_RS00650 efflux RND transporter permease subunit 0.39 M666_RS03595 DNA repair protein RadA low > 67
Rhodanobacter denitrificans FW104-10B01 0.23 LRK54_RS11905 efflux RND transporter permease subunit 0.58 LRK54_RS02525 DNA repair protein RadA low > 59
Pantoea agglomerans CFBP13505 P0401 0.23 PagCFBP13505_RS19855 multidrug efflux RND transporter permease AcrD 0.80 PagCFBP13505_RS21755 DNA repair protein RadA low > 74
Paraburkholderia bryophila 376MFSha3.1 0.23 H281DRAFT_04170 multidrug efflux pump 0.52 H281DRAFT_00590 DNA replication and repair protein RadA low > 103
Pectobacterium carotovorum WPP14 0.23 HER17_RS01560 multidrug efflux RND transporter permease AcrD 0.77 HER17_RS19085 DNA repair protein RadA low > 75
Kangiella aquimarina DSM 16071 0.23 B158DRAFT_0733 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.59 B158DRAFT_0877 DNA replication and repair protein RadA low > 40
Pantoea sp. MT58 0.23 IAI47_05310 multidrug efflux RND transporter permease AcrD 0.80 IAI47_16345 DNA repair protein RadA low > 76
Dickeya dadantii 3937 0.23 DDA3937_RS05735 multidrug efflux RND transporter permease subunit 0.76 DDA3937_RS02420 DNA repair protein RadA low > 74
Erwinia amylovora T8 0.22 OLJFJH_17855 multidrug efflux RND transporter permease subunit AcrB 0.81 OLJFJH_01590 DNA repair protein RadA low > 58
Ralstonia sp. UNC404CL21Col 0.22 ABZR87_RS09795 efflux RND transporter permease subunit 0.53 ABZR87_RS11670 DNA repair protein RadA low > 80
Variovorax sp. OAS795 0.22 ABID97_RS17350 efflux RND transporter permease subunit 0.51 ABID97_RS03770 DNA repair protein RadA low > 91
Dickeya dianthicola 67-19 0.22 HGI48_RS05790 multidrug efflux RND transporter permease subunit 0.76 HGI48_RS02380 DNA repair protein RadA low > 71
Dickeya dianthicola ME23 0.22 DZA65_RS06115 multidrug efflux RND transporter permease subunit 0.76 DZA65_RS02485 DNA repair protein RadA low > 75
Cupriavidus basilensis FW507-4G11 0.22 RR42_RS32420 multidrug efflux RND transporter permease subunit 0.54 RR42_RS12030 DNA repair protein RadA — —
Ralstonia solanacearum GMI1000 0.22 RS_RS00045 multidrug efflux RND transporter permease subunit 0.52 RS_RS06880 DNA repair protein RadA low > 80
Ralstonia solanacearum UW163 0.22 UW163_RS04135 multidrug efflux RND transporter permease subunit 0.52 UW163_RS13540 DNA repair protein RadA — —
Ralstonia solanacearum IBSBF1503 0.22 RALBFv3_RS09445 multidrug efflux RND transporter permease subunit 0.52 RALBFv3_RS00210 DNA repair protein RadA low > 76
Ralstonia solanacearum PSI07 0.22 RPSI07_RS23905 hydrophobe/amphiphile efflux-1 family RND transporter 0.52 RPSI07_RS17270 DNA repair protein RadA low > 81
Rhodanobacter sp000427505 FW510-R12 0.22 LRK53_RS07935 multidrug efflux RND transporter permease subunit 0.59 LRK53_RS07420 DNA repair protein RadA low > 59
Erwinia tracheiphila SCR3 0.22 LU632_RS18185 efflux RND transporter permease subunit 0.80 LU632_RS02550 radA DNA repair protein RadA — —
Erwinia tracheiphila HP pepo 2.2 0.21 IJEDHG_16580 adeB hydrophobe/amphiphile efflux-1 family RND transporter 0.80 IJEDHG_06365 radA DNA repair protein RadA — —
Castellaniella sp019104865 MT123 0.20 ABCV34_RS14620 multidrug efflux RND transporter permease subunit 0.51 ABCV34_RS02345 DNA repair protein RadA low > 48

Not shown: 0 genomes with orthologs for CSW01_00850 only; 27 genomes with orthologs for CSW01_11870 only