| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Vibrio cholerae E7946 ATCC 55056 | 1.0 | CSW01_13515 | | HslU--HslV peptidase proteolytic subunit | 1.0 | CSW01_09655 | | SELO family protein | 0.73 | 12 |
| Shewanella loihica PV-4 | 0.80 | Shew_0375 | | ATP-dependent protease peptidase subunit (RefSeq) | 0.41 | Shew_0262 | | hypothetical protein (RefSeq) | — | — |
| Escherichia fergusonii Becca | 0.80 | EFB2_04686 | | ATP-dependent protease subunit HslV | 0.43 | EFB2_02285 | | Protein adenylyltransferase SelO | low | > 86 |
| Escherichia coli Nissle 1917 | 0.80 | ECOLIN_RS22640 | | ATP-dependent protease subunit HslV | 0.43 | ECOLIN_RS09535 | | protein adenylyltransferase SelO | low | > 55 |
| Escherichia coli BW25113 | 0.80 | b3932 | hslV | ATP-dependent protease peptidase subunit (NCBI) | 0.44 | b1706 | ydiU | hypothetical protein (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.80 | ECD_03817 | | peptidase component of the HslUV protease | 0.44 | ECD_01675 | | UPF0061 family protein | low | > 61 |
| Escherichia coli ECRC98 | 0.79 | JDDGAC_17360 | hslV | ATP-dependent protease subunit HslV | 0.43 | JDDGAC_01700 | selO | protein adenylyltransferase SelO | low | > 87 |
| Escherichia coli ECRC102 | 0.79 | NIAGMN_11490 | hslV | ATP-dependent protease subunit HslV | 0.43 | NIAGMN_00940 | selO | protein adenylyltransferase SelO | — | — |
| Escherichia coli ECRC99 | 0.79 | KEDOAH_14425 | hslV | ATP-dependent protease subunit HslV | 0.43 | KEDOAH_00985 | selO | protein adenylyltransferase SelO | — | — |
| Escherichia coli ECRC100 | 0.79 | OKFHMN_13735 | hslV | ATP-dependent protease subunit HslV | 0.43 | OKFHMN_27125 | selO | protein adenylyltransferase SelO | low | > 79 |
| Escherichia coli ECRC101 | 0.79 | MCAODC_04235 | hslV | ATP-dependent protease subunit HslV | 0.43 | MCAODC_18285 | selO | protein adenylyltransferase SelO | low | > 87 |
| Escherichia coli ECOR38 | 0.79 | HEPCGN_12380 | hslV | ATP-dependent protease subunit HslV | 0.43 | HEPCGN_05490 | selO | protein adenylyltransferase SelO | low | > 88 |
| Escherichia coli ECOR27 | 0.79 | NOLOHH_05880 | hslV | ATP-dependent protease subunit HslV | 0.43 | NOLOHH_17645 | selO | protein adenylyltransferase SelO | — | — |
| Shewanella amazonensis SB2B | 0.79 | Sama_0441 | | ATP-dependent protease peptidase subunit (RefSeq) | 0.30 | Sama_2755 | | hypothetical protein (RefSeq) | low | > 62 |
| Enterobacter sp. TBS_079 | 0.79 | MPMX20_04537 | | ATP-dependent protease subunit HslV | 0.44 | MPMX20_01907 | | Protein adenylyltransferase SelO | low | > 85 |
| Enterobacter asburiae PDN3 | 0.79 | EX28DRAFT_4405 | | ATP-dependent protease HslVU, peptidase subunit | 0.44 | EX28DRAFT_1713 | | Uncharacterized conserved protein | low | > 76 |
| Klebsiella pneumoniae MKP103 | 0.78 | KDGMDA_09265 | | ATP-dependent protease subunit HslV | 0.44 | KDGMDA_24305 | | protein adenylyltransferase SelO | low | > 94 |
| Klebsiella michiganensis M5al | 0.78 | BWI76_RS00755 | | ATP-dependent protease subunit HslV | 0.45 | BWI76_RS17085 | | hypothetical protein | low | > 92 |
| Klebsiella pneumoniae MRSN742743 | 0.78 | GJGHJB_04913 | hslV | ATP-dependent protease subunit HslV | 0.44 | GJGHJB_02014 | selO | protein adenylyltransferase SelO | low | > 83 |
| Serratia liquefaciens MT49 | 0.78 | IAI46_24570 | | ATP-dependent protease subunit HslV | 0.44 | IAI46_11065 | | YdiU family protein | low | > 87 |
| Rahnella sp. WP5 | 0.78 | EX31_RS14240 | | ATP-dependent protease subunit HslV | 0.43 | EX31_RS13970 | | YdiU family protein | low | > 89 |
| Dickeya dadantii 3937 | 0.77 | DDA3937_RS00920 | | ATP-dependent protease subunit HslV | 0.44 | DDA3937_RS12935 | | YdiU family protein | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.77 | LU632_RS19670 | hslV | ATP-dependent protease subunit HslV | 0.41 | LU632_RS10980 | | YdiU family protein | low | > 73 |
| Dickeya dianthicola 67-19 | 0.77 | HGI48_RS20455 | | ATP-dependent protease subunit HslV | 0.44 | HGI48_RS13010 | | YdiU family protein | low | > 71 |
| Dickeya dianthicola ME23 | 0.77 | DZA65_RS21500 | | ATP-dependent protease subunit HslV | 0.44 | DZA65_RS13470 | | YdiU family protein | low | > 75 |
| Pantoea agglomerans CFBP13505 P0401 | 0.76 | PagCFBP13516_RS00845 | hslV | ATP-dependent protease subunit HslV | 0.43 | PagCFBP13516_RS11090 | | protein adenylyltransferase SelO | low | > 80 |
| Pantoea sp. MT58 | 0.76 | IAI47_00850 | | ATP-dependent protease subunit HslV | 0.43 | IAI47_10920 | | YdiU family protein | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.76 | HER17_RS00855 | | ATP-dependent protease subunit HslV | 0.44 | HER17_RS08850 | | YdiU family protein | low | > 75 |
| Erwinia tracheiphila HP pepo 2.2 | 0.76 | IJEDHG_12990 | hslV | ATP-dependent protease subunit HslV | 0.41 | IJEDHG_25400 | | YdiU family protein | low | > 61 |
| Erwinia amylovora T8 | 0.76 | OLJFJH_06065 | | ATP-dependent protease subunit HslV | 0.44 | OLJFJH_14650 | | YdiU family protein | low | > 58 |
| Shewanella sp. ANA-3 | 0.76 | Shewana3_3699 | | ATP-dependent protease peptidase subunit (RefSeq) | 0.40 | Shewana3_3841 | | hypothetical protein (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.76 | SO4162 | hslV | ATP-dependent protease HslV (NCBI ptt file) | 0.40 | SO0330 | | conserved hypothetical protein (NCBI ptt file) | low | > 76 |
| Pseudomonas lactucae CFBP13502 | 0.73 | GEMAOFIL_00617 | | ATP-dependent protease subunit HslV | 0.43 | GEMAOFIL_00665 | | Protein adenylyltransferase SelO | low | > 96 |
| Pseudomonas orientalis W4I3 | 0.73 | QF045_RS04980 | | ATP-dependent protease subunit HslV | 0.43 | QF045_RS05205 | | YdiU family protein | low | > 93 |
| Pseudomonas fluorescens SBW25 | 0.73 | PFLU_RS01965 | | ATP-dependent protease subunit HslV | 0.42 | PFLU_RS02195 | | YdiU family protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.73 | PFLU_RS01965 | | ATP-dependent protease subunit HslV | 0.42 | PFLU_RS02195 | | YdiU family protein | low | > 109 |
| Marinobacter adhaerens HP15 | 0.73 | HP15_466 | | ATP-dependent protease peptidase subunit | 0.47 | HP15_1144 | | protein belonging to uncharacterized protein family UPF0061 | low | > 73 |
| Pseudomonas simiae WCS417 | 0.73 | PS417_01920 | | ATP-dependent protease subunit HslV | 0.43 | PS417_02140 | | hypothetical protein | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.71 | Pf1N1B4_1552 | | ATP-dependent protease HslV (EC 3.4.25.-) | 0.43 | Pf1N1B4_1498 | | Selenoprotein O and cysteine-containing homologs | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.71 | AO353_12430 | | ATP-dependent protease subunit HslV | 0.43 | AO353_12770 | | hypothetical protein | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.70 | ABZR86_RS15035 | | ATP-dependent protease subunit HslV | 0.32 | ABZR86_RS00335 | | protein adenylyltransferase SelO | low | > 74 |
| Pseudomonas sp. BP01 | 0.69 | JOY50_RS09690 | hslV | ATP-dependent protease subunit HslV | 0.44 | JOY50_RS09370 | selO | protein adenylyltransferase SelO | low | > 84 |
| Pseudomonas putida KT2440 | 0.68 | PP_5000 | | peptidase component of the ATP-dependent HslVU protease | 0.44 | PP_5068 | | conserved protein of unknown function, UPF0061 family | low | > 96 |
| Pseudomonas sp. S08-1 | 0.68 | OH686_10095 | | ATP-dependent protease HslVU, peptidase subunit | 0.43 | OH686_09805 | | UPF0061 protein YdiU | low | > 80 |
| Variovorax sp. SCN45 | 0.68 | GFF4484 | | ATP-dependent protease subunit HslV (EC 3.4.25.2) | 0.39 | GFF1330 | | UPF0061 protein YdiU | low | > 127 |
| Pseudomonas aeruginosa PA14 | 0.68 | IKLFDK_28260 | | ATP-dependent protease subunit HslV | 0.42 | IKLFDK_28420 | | YdiU family protein | low | > 98 |
| Pseudomonas aeruginosa MRSN321 | 0.68 | PFGADD_05293 | hslV | ATP-dependent protease subunit HslV | 0.42 | PFGADD_05261 | selO | protein adenylyltransferase SelO | low | > 99 |
| Pseudomonas aeruginosa PUPa3 | 0.68 | NPBIFN_05369 | hslV | ATP-dependent protease subunit HslV | 0.42 | NPBIFN_05337 | selO | protein adenylyltransferase SelO | low | > 101 |
| Pseudomonas sp. SVBP6 | 0.68 | COO64_RS13565 | hslV | ATP-dependent protease subunit HslV | 0.42 | COO64_RS13240 | selO | protein adenylyltransferase SelO | — | — |
| Pseudomonas segetis P6 | 0.67 | ACVTMO_RS21065 | hslV | ATP-dependent protease subunit HslV | 0.43 | ACVTMO_RS20940 | selO | protein adenylyltransferase SelO | low | > 75 |
| Dechlorosoma suillum PS | 0.67 | Dsui_0581 | | ATP-dependent protease HslVU, peptidase subunit | 0.29 | Dsui_1465 | | hypothetical protein | low | > 51 |
| Rhodanobacter denitrificans MT42 | 0.67 | LRK55_RS08290 | | ATP-dependent protease subunit HslV | 0.31 | LRK55_RS15710 | | YdiU family protein | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.67 | LRK54_RS08525 | | ATP-dependent protease subunit HslV | 0.31 | LRK54_RS15955 | | YdiU family protein | — | — |
| Variovorax sp. OAS795 | 0.67 | ABID97_RS06180 | | ATP-dependent protease subunit HslV | 0.40 | ABID97_RS15700 | | protein adenylyltransferase SelO | low | > 91 |
| Rhodanobacter sp. FW510-T8 | 0.67 | OKGIIK_15320 | hslV | ATP-dependent protease subunit HslV | 0.31 | OKGIIK_09030 | selO | YdiU family protein | — | — |
| Pseudomonas stutzeri RCH2 | 0.67 | Psest_3936 | | ATP-dependent protease HslVU, peptidase subunit | 0.42 | Psest_0396 | | Uncharacterized conserved protein | low | > 67 |
| Pseudomonas syringae pv. syringae B728a | 0.66 | Psyr_0395 | | HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B | 0.42 | Psyr_0494 | | Protein of unknown function UPF0061 | low | > 86 |
| Rhodanobacter sp000427505 FW510-R12 | 0.66 | LRK53_RS02310 | | ATP-dependent protease subunit HslV | 0.31 | LRK53_RS12815 | | YdiU family protein | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.66 | Psyr_0395 | | HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B | 0.42 | Psyr_0494 | | Protein of unknown function UPF0061 | low | > 86 |
| Acidovorax sp. GW101-3H11 | 0.66 | Ac3H11_2004 | | ATP-dependent protease HslV (EC 3.4.25.-) | 0.41 | Ac3H11_2534 | | Selenoprotein O and cysteine-containing homologs | low | > 79 |
| Pseudomonas sp. RS175 | 0.65 | PFR28_04999 | | ATP-dependent protease subunit HslV | 0.45 | PFR28_05043 | | Protein adenylyltransferase SelO | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.65 | RR42_RS01060 | | peptidase | 0.38 | RR42_RS11160 | | hypothetical protein | low | > 128 |
| Pseudomonas protegens RBAN4 | 0.64 | FABNJH_02280 | hslV | ATP-dependent protease subunit HslV | 0.42 | FABNJH_02530 | selO | YdiU family protein | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.64 | Pf6N2E2_3769 | | ATP-dependent protease HslV (EC 3.4.25.-) | 0.42 | Pf6N2E2_3692 | | Selenoprotein O and cysteine-containing homologs | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.64 | AO356_09455 | | ATP-dependent protease subunit HslV | 0.43 | AO356_09050 | | hypothetical protein | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.64 | PfGW456L13_289 | | ATP-dependent protease HslV (EC 3.4.25.-) | 0.43 | PfGW456L13_231 | | Selenoprotein O and cysteine-containing homologs | — | — |
| Pseudomonas sp. DMC3 | 0.64 | GFF3086 | | ATP-dependent protease subunit HslV | 0.41 | GFF3135 | | Protein adenylyltransferase SelO | — | — |
| Castellaniella sp019104865 MT123 | 0.64 | ABCV34_RS13415 | | ATP-dependent protease subunit HslV | 0.32 | ABCV34_RS04315 | | YdiU family protein | low | > 48 |
| Paraburkholderia sabiae LMG 24235 | 0.63 | QEN71_RS00335 | | ATP-dependent protease subunit HslV | 0.39 | QEN71_RS21900 | | YdiU family protein | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.63 | H281DRAFT_02206 | | HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B | 0.39 | H281DRAFT_00914 | | Uncharacterized conserved protein YdiU, UPF0061 family | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.63 | ABIE53_000422 | | ATP-dependent HslUV protease subunit HslV | 0.39 | ABIE53_002149 | | uncharacterized protein YdiU (UPF0061 family) | low | > 113 |
| Burkholderia phytofirmans PsJN | 0.63 | BPHYT_RS01635 | | ATP-dependent protease subunit HslV | 0.39 | BPHYT_RS09550 | | hypothetical protein | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.61 | GFF552 | | ATP-dependent protease HslV (EC 3.4.25.-) | 0.38 | GFF4580 | | Selenoprotein O and cysteine-containing homologs | low | > 90 |
| Ralstonia solanacearum PSI07 | 0.60 | RPSI07_RS23735 | | ATP-dependent protease subunit HslV | 0.40 | RPSI07_RS16295 | | YdiU family protein | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.60 | RS_RS00215 | | HslU--HslV peptidase proteolytic subunit | 0.40 | RS_RS08830 | | YdiU family protein | low | > 80 |
| Sinorhizobium meliloti 1021 | 0.60 | SMc02575 | | ATP-dependent protease peptidase subunit | 0.31 | SMc00453 | | hypothetical protein | low | > 103 |
| Ralstonia solanacearum IBSBF1503 | 0.60 | RALBFv3_RS09630 | | ATP-dependent protease subunit HslV | 0.41 | RALBFv3_RS01180 | | YdiU family protein | low | > 76 |
| Ralstonia solanacearum UW163 | 0.60 | UW163_RS03950 | | ATP-dependent protease subunit HslV | 0.41 | UW163_RS14490 | | YdiU family protein | — | — |
| Herbaspirillum seropedicae SmR1 | 0.59 | HSERO_RS00910 | | peptidase | 0.42 | HSERO_RS11220 | | hypothetical protein | low | > 78 |
| Ralstonia sp. UNC404CL21Col | 0.59 | ABZR87_RS05115 | | ATP-dependent protease subunit HslV | 0.40 | ABZR87_RS12630 | | protein adenylyltransferase SelO | low | > 80 |
| Rhodopseudomonas palustris CGA009 | 0.59 | TX73_001600 | | ATP-dependent protease subunit HslV | 0.33 | TX73_015750 | | YdiU family protein | low | > 86 |
| Bosea sp. OAE506 | 0.58 | ABIE41_RS04430 | | ATP-dependent protease subunit HslV | 0.30 | ABIE41_RS01530 | | protein adenylyltransferase SelO | low | > 77 |
| Dinoroseobacter shibae DFL-12 | 0.57 | Dshi_3440 | | 20S proteasome A and B subunits (RefSeq) | 0.29 | Dshi_1157 | | protein of unknown function UPF0061 (RefSeq) | low | > 64 |
| Rhizobium sp. OAE497 | 0.56 | ABIE40_RS19465 | | ATP-dependent protease subunit HslV | 0.33 | ABIE40_RS04755 | | protein adenylyltransferase SelO | low | > 107 |
| Agrobacterium fabrum C58 | 0.55 | Atu0044 | | heat shock protein hslV | 0.32 | Atu0945 | | hypothetical protein | low | > 89 |
| Lysobacter sp. OAE881 | 0.54 | ABIE51_RS03040 | | ATP-dependent protease subunit HslV | 0.31 | ABIE51_RS12255 | | protein adenylyltransferase SelO | low | > 62 |
| Xanthobacter sp. DMC5 | 0.53 | GFF2411 | | ATP-dependent protease subunit HslV | 0.33 | GFF2077 | | Protein adenylyltransferase SelO | — | — |
| Phaeobacter inhibens DSM 17395 | 0.52 | PGA1_c35260 | | ATP-dependent protease HslV | 0.28 | PGA1_c11360 | | Uncharacterized conserved protein | low | > 62 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.44 | CA264_04815 | | ATP-dependent protease subunit HslV | 0.30 | CA264_03360 | | hypothetical protein | low | > 74 |
Not shown: 16 genomes with orthologs for CSW01_13515 only; 6 genomes with orthologs for CSW01_09655 only