Conservation of cofitness between CSW01_00650 and CSW01_04845 in Vibrio cholerae E7946 ATCC 55056

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_00650 tyrosine recombinase XerC 1.0 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 0.74 9
Dickeya dadantii 3937 0.56 DDA3937_RS19890 tyrosine recombinase XerC 0.57 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA — —
Dickeya dianthicola 67-19 0.56 HGI48_RS20045 tyrosine recombinase XerC 0.57 HGI48_RS06200 D-alanyl-D-alanine carboxypeptidase DacA low > 71
Dickeya dianthicola ME23 0.56 DZA65_RS21090 tyrosine recombinase XerC 0.56 DZA65_RS06545 D-alanyl-D-alanine carboxypeptidase DacA low > 75
Rahnella sp. WP5 0.56 EX31_RS15165 tyrosine recombinase XerC 0.57 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA low > 89
Klebsiella michiganensis M5al 0.55 BWI76_RS01210 tyrosine recombinase XerC 0.55 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase low > 92
Serratia liquefaciens MT49 0.55 IAI46_00725 tyrosine recombinase XerC 0.56 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF239 Tyrosine recombinase XerC 0.55 GFF4545 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Escherichia coli ECRC101 0.55 MCAODC_04925 xerC tyrosine recombinase XerC 0.55 MCAODC_26595 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECRC100 0.55 OKFHMN_14420 xerC tyrosine recombinase XerC 0.55 OKFHMN_07380 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 79
Escherichia coli ECRC98 0.55 JDDGAC_18045 xerC tyrosine recombinase XerC 0.55 JDDGAC_11025 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli BL21 0.55 ECD_03687 site-specific tyrosine recombinase 0.55 ECD_00601 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) low > 61
Escherichia coli ECRC102 0.55 NIAGMN_12175 xerC tyrosine recombinase XerC 0.55 NIAGMN_05435 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli ECRC99 0.55 KEDOAH_13730 xerC tyrosine recombinase XerC 0.55 KEDOAH_20590 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli Nissle 1917 0.54 ECOLIN_RS21875 tyrosine recombinase XerC 0.55 ECOLIN_RS03445 D-alanyl-D-alanine carboxypeptidase DacA — —
Escherichia coli BW25113 0.54 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.55 b0632 dacA D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) low > 76
Escherichia fergusonii Becca 0.54 EFB2_04826 Tyrosine recombinase XerC 0.54 EFB2_03460 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_04239 Tyrosine recombinase XerC 0.55 OHPLBJKB_03074 D-alanyl-D-alanine carboxypeptidase DacA low > 74
Escherichia coli ECOR38 0.54 HEPCGN_13125 xerC tyrosine recombinase XerC 0.55 HEPCGN_00895 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 88
Escherichia coli ECOR27 0.54 NOLOHH_06550 xerC tyrosine recombinase XerC 0.55 NOLOHH_23755 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 76
Escherichia coli ECRC62 0.54 BNILDI_04985 xerC tyrosine recombinase XerC 0.55 BNILDI_21765 dacA D-alanyl-D-alanine carboxypeptidase DacA low > 75
Enterobacter asburiae PDN3 0.54 EX28DRAFT_4480 tyrosine recombinase XerC 0.55 EX28DRAFT_2331 D-alanyl-D-alanine carboxypeptidase — —
Pectobacterium carotovorum WPP14 0.54 HER17_RS01350 tyrosine recombinase XerC 0.58 HER17_RS15260 D-alanyl-D-alanine carboxypeptidase DacA low > 75
Erwinia amylovora T8 0.54 OLJFJH_06415 tyrosine recombinase XerC 0.55 OLJFJH_17245 D-alanyl-D-alanine carboxypeptidase DacA low > 58
Klebsiella pneumoniae MKP103 0.53 KDGMDA_09700 tyrosine recombinase XerC 0.55 KDGMDA_16380 D-alanyl-D-alanine carboxypeptidase DacA 0.22 82
Erwinia tracheiphila HP pepo 2.2 0.53 IJEDHG_08780 xerC tyrosine recombinase XerC 0.56 IJEDHG_02480 D-alanyl-D-alanine carboxypeptidase DacC — —
Erwinia tracheiphila SCR3 0.53 LU632_RS24135 xerC tyrosine recombinase XerC 0.56 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA — —
Pantoea sp. MT58 0.53 IAI47_18400 tyrosine recombinase XerC 0.57 IAI47_14040 D-alanyl-D-alanine carboxypeptidase DacA low > 76
Pantoea agglomerans CFBP13505 P0401 0.53 PagCFBP13505_RS15380 tyrosine recombinase XerC 0.56 PagCFBP13505_RS03265 D-alanyl-D-alanine carboxypeptidase DacA — —
Enterobacter sp. TBS_079 0.52 MPMX20_04465 Tyrosine recombinase XerC 0.55 MPMX20_01291 D-alanyl-D-alanine carboxypeptidase DacA low > 85
Shewanella sp. ANA-3 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.69 Shewana3_0991 penicillin-binding protein 6 (RefSeq) low > 73
Shewanella oneidensis MR-1 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.69 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) 0.69 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Alteromonas macleodii MIT1002 0.45 MIT1002_00157 Tyrosine recombinase XerC 0.62 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor — —
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.50 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase — —
Shewanella loihica PV-4 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) 0.68 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) low > 60
Marinobacter adhaerens HP15 0.44 HP15_250 site-specific tyrosine recombinase XerC 0.45 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase — —
Pseudomonas segetis P6 0.40 MPMX49_04536 Tyrosine recombinase XerC 0.46 MPMX49_01056 D-alanyl-D-alanine carboxypeptidase DacC — —
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.847.1 Site-specific tyrosine recombinase 0.42 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Methylophilus sp. DMC18 0.40 GFF1535 Tyrosine recombinase XerC 0.39 GFF2179 D-alanyl-D-alanine carboxypeptidase DacC low > 43
Pseudomonas aeruginosa PUPa3 0.40 DQ20_RS49840 xerC;go_function=site-specific tyrosine recombinase XerC 0.45 DQ20_RS48190 D-alanyl-D-alanine carboxypeptidase family protein low > 101
Pseudomonas aeruginosa MRSN321 0.40 DY961_RS12285 xerC;go_function=site-specific tyrosine recombinase XerC 0.45 DY961_RS12860 D-alanyl-D-alanine carboxypeptidase family protein low > 100
Pseudomonas aeruginosa PA14 0.40 IKLFDK_27050 tyrosine recombinase XerC 0.45 IKLFDK_20625 serine-type D-Ala-D-Ala carboxypeptidase low > 98
Pseudomonas stutzeri RCH2 0.40 Psest_3767 tyrosine recombinase XerC 0.46 Psest_0516 D-alanyl-D-alanine carboxypeptidase low > 67
Pseudomonas sp. SVBP6 0.39 COO64_RS01270 xerC tyrosine recombinase XerC 0.46 COO64_RS15590 D-alanyl-D-alanine carboxypeptidase family protein low > 93
Pseudomonas sp. BP01 0.39 JOY50_RS22610 xerC tyrosine recombinase XerC 0.45 JOY50_RS17720 D-alanyl-D-alanine carboxypeptidase family protein low > 84
Pseudomonas putida KT2440 0.39 PP_5230 Tyrosine recombinase XerC 0.45 PP_4803 D-alanyl-D-alanine carboxypeptidase low > 96
Pseudomonas syringae pv. syringae B728a 0.39 Psyr_0185 tyrosine recombinase XerC subunit 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.39 Psyr_0185 tyrosine recombinase XerC subunit 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 low > 86
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_842 Tyrosine recombinase XerC 0.46 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas sp. S08-1 0.38 OH686_13785 tyrosine recombinase XerC 0.45 OH686_09300 D-alanyl-D-alanine carboxypeptidase low > 80
Pseudomonas sp. DMC3 0.38 GFF370 Tyrosine recombinase XerC 0.46 GFF3884 D-alanyl-D-alanine carboxypeptidase DacC low > 89
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_2171 Tyrosine recombinase XerC 0.46 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_4416 Tyrosine recombinase XerC 0.46 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.27 76
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_12725 recombinase XerC 0.46 AO356_15330 D-alanyl-D-alanine carboxypeptidase low > 104
Lysobacter sp. OAE881 0.38 ABIE51_RS03035 tyrosine recombinase XerC 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein low > 62
Rhodanobacter denitrificans MT42 0.38 LRK55_RS08300 tyrosine recombinase XerC 0.41 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein — —
Pseudomonas sp. RS175 0.38 PFR28_04378 Tyrosine recombinase XerC 0.47 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC low > 88
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_09050 recombinase XerC 0.46 AO353_06455 D-alanyl-D-alanine carboxypeptidase low > 101
Rhodanobacter sp000427505 FW510-R12 0.37 LRK53_RS02315 tyrosine recombinase XerC 0.41 LRK53_RS17780 D-alanyl-D-alanine carboxypeptidase — —
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC 0.42 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase low > 53
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS08535 tyrosine recombinase XerC 0.41 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase low > 59
Pseudomonas orientalis W4I3 0.37 QF045_RS01960 tyrosine recombinase XerC 0.46 QF045_RS26990 D-alanyl-D-alanine carboxypeptidase family protein — —
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS15025 tyrosine recombinase XerC 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein — —
Dechlorosoma suillum PS 0.37 Dsui_0651 tyrosine recombinase XerC 0.37 Dsui_0899 D-alanyl-D-alanine carboxypeptidase low > 51
Pseudomonas lactucae CFBP13502 0.37 GEMAOFIL_05657 Tyrosine recombinase XerC 0.46 GEMAOFIL_05094 D-alanyl-D-alanine carboxypeptidase DacC low > 96
Burkholderia phytofirmans PsJN 0.36 BPHYT_RS01655 tyrosine recombinase XerC 0.37 BPHYT_RS02415 cytochrome C550 — —
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS21475 recombinase XerC 0.35 HSERO_RS21530 cytochrome C550 low > 78
Ralstonia solanacearum PSI07 0.35 RPSI07_RS23690 tyrosine recombinase XerC 0.36 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase low > 81
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS00355 tyrosine recombinase XerC 0.36 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein — —
Pseudomonas simiae WCS417 0.34 PS417_27595 recombinase XerC 0.46 PS417_24705 D-alanyl-D-alanine carboxypeptidase low > 88
Pseudomonas fluorescens SBW25-INTG 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Pseudomonas fluorescens SBW25 0.34 PFLU_RS29280 tyrosine recombinase XerC 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_02202 integrase/recombinase XerC 0.36 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 — —
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS05065 tyrosine recombinase XerC 0.36 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein low > 80
Ralstonia solanacearum GMI1000 0.34 RS_RS00260 Tyrosine recombinase XerC 1 0.35 RS_RS01610 D-alanyl-D-alanine carboxypeptidase low > 80
Castellaniella sp019104865 MT123 0.34 ABCV34_RS13455 tyrosine recombinase XerC 0.34 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein low > 48
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS09675 tyrosine recombinase XerC 0.34 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase low > 76
Ralstonia solanacearum UW163 0.33 UW163_RS03905 tyrosine recombinase XerC 0.34 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase — —
Variovorax sp. OAS795 0.33 ABID97_RS06150 tyrosine recombinase XerC 0.32 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein low > 91
Paraburkholderia graminis OAS925 0.33 ABIE53_000426 integrase/recombinase XerC 0.36 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) — —
Acidovorax sp. GW101-3H11 0.31 Ac3H11_1995 Tyrosine recombinase XerC 0.32 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF547 Tyrosine recombinase XerC 0.33 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 90
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS00615 recombinase XerC 0.39 RR42_RS01680 cytochrome C550 low > 128
Magnetospirillum magneticum AMB-1 0.25 AMB_RS21485 tyrosine recombinase XerC 0.30 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase — —
Agrobacterium fabrum C58 0.24 Atu2628 site-specific recombinase 0.21 Atu1499 penicillin binding protein — —
Azospirillum brasilense Sp245 0.23 AZOBR_RS03965 tyrosine recombinase XerC 0.33 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase — —
Rhodopseudomonas palustris CGA009 0.22 TX73_000945 tyrosine recombinase XerC 0.26 TX73_014370 D-alanyl-D-alanine carboxypeptidase low > 86
Sphingomonas koreensis DSMZ 15582 0.22 Ga0059261_2764 Site-specific recombinase XerD 0.28 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase — —
Bosea sp. OAE506 0.21 ABIE41_RS07870 tyrosine recombinase XerC 0.30 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein — —

Not shown: 8 genomes with orthologs for CSW01_00650 only; 9 genomes with orthologs for CSW01_04845 only