Conservation of cofitness between CSW01_01005 and CSW01_01035 in Vibrio cholerae E7946 ATCC 55056

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 1.0 CSW01_01035 gamma-glutamyltransferase 0.50 4
Escherichia coli HS(pFamp)R (ATCC 700891) 0.65 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J 0.26 OHPLBJKB_00256 Glutathione hydrolase proenzyme low > 74
Escherichia coli BW25113 0.65 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) 0.26 b3447 ggt gamma-glutamyltranspeptidase periplasmic precursor (NCBI) low > 76
Dickeya dadantii 3937 0.65 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.23 DDA3937_RS14030 gamma-glutamyltransferase low > 74
Dickeya dianthicola 67-19 0.65 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.23 HGI48_RS14025 gamma-glutamyltransferase low > 71
Escherichia coli ECRC100 0.65 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.26 OKFHMN_16800 ggt gamma-glutamyltransferase low > 79
Escherichia coli ECRC98 0.65 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.26 JDDGAC_20430 ggt gamma-glutamyltransferase low > 87
Escherichia coli ECRC101 0.65 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.25 MCAODC_07330 ggt gamma-glutamyltransferase low > 88
Escherichia fergusonii Becca 0.65 EFB2_00316 Ribosomal RNA large subunit methyltransferase J 0.26 EFB2_00375 Glutathione hydrolase proenzyme low > 86
Escherichia coli Nissle 1917 0.65 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.26 ECOLIN_RS19715 gamma-glutamyltransferase low > 55
Escherichia coli ECRC99 0.65 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.26 KEDOAH_11340 ggt gamma-glutamyltransferase — —
Escherichia coli ECRC102 0.65 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.26 NIAGMN_14570 ggt gamma-glutamyltransferase low > 80
Escherichia coli ECOR27 0.65 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.26 NOLOHH_08590 ggt gamma-glutamyltransferase low > 76
Escherichia coli ECRC62 0.65 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.26 BNILDI_02915 ggt gamma-glutamyltransferase low > 75
Escherichia coli BL21 0.65 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent 0.26 ECD_03296 gamma-glutamyltranspeptidase low > 61
Enterobacter asburiae PDN3 0.65 EX28DRAFT_4062 Protein involved in catabolism of external DNA 0.26 EX28DRAFT_4279 gamma-glutamyltranspeptidase low > 76
Rahnella sp. WP5 0.65 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.23 EX31_RS22075 gamma-glutamyltransferase low > 89
Dickeya dianthicola ME23 0.65 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.23 DZA65_RS14700 gamma-glutamyltransferase low > 75
Escherichia coli ECOR38 0.65 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.26 HEPCGN_15620 ggt gamma-glutamyltransferase low > 88
Enterobacter sp. TBS_079 0.64 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J 0.25 MPMX20_04323 Glutathione hydrolase proenzyme low > 85
Klebsiella pneumoniae MKP103 0.64 KDGMDA_07435 Ribosomal RNA large subunit methyltransferase J 0.25 KDGMDA_07150 gamma-glutamyltransferase low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.64 GFF515 Protein involved in catabolism of external DNA 0.26 GFF561 Gamma-glutamyltranspeptidase (EC 2.3.2.2) low > 78
Klebsiella michiganensis M5al 0.64 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.26 BWI76_RS26275 gamma-glutamyltransferase low > 92
Erwinia amylovora T8 0.63 OLJFJH_04555 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.25 OLJFJH_04300 gamma-glutamyltransferase low > 58
Serratia liquefaciens MT49 0.63 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.23 IAI46_04820 gamma-glutamyltransferase low > 86
Pectobacterium carotovorum WPP14 0.62 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.22 HER17_RS00330 gamma-glutamyltransferase low > 75
Erwinia tracheiphila SCR3 0.62 LU632_RS19485 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.24 LU632_RS19180 ggt gamma-glutamyltransferase low > 74
Erwinia tracheiphila HP pepo 2.2 0.62 IJEDHG_12575 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.24 IJEDHG_08020 ggt gamma-glutamyltransferase low > 61
Pantoea sp. MT58 0.61 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.25 IAI47_01620 gamma-glutamyltransferase low > 76
Pantoea agglomerans CFBP13505 P0401 0.61 PagCFBP13505_RS17840 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.25 PagCFBP13505_RS18135 gamma-glutamyltransferase low > 74
Shewanella amazonensis SB2B 0.51 Sama_3563 hypothetical protein (RefSeq) 0.25 Sama_1566 gamma-glutamyltransferase (RefSeq) low > 62
Shewanella sp. ANA-3 0.49 Shewana3_4038 hypothetical protein (RefSeq) 0.25 Shewana3_2487 gamma-glutamyltransferase 1 (RefSeq) low > 73
Shewanella oneidensis MR-1 0.48 SO4659 conserved hypothetical protein (NCBI ptt file) 0.26 SO1952 ggt-2 gamma-glutamyltranspeptidase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.48 Shew_3648 hypothetical protein (RefSeq) 0.27 Shew_2158 gamma-glutamyltransferase (RefSeq) low > 60
Azospirillum brasilense Sp245 0.48 AZOBR_RS21900 lactate dehydrogenase 0.47 AZOBR_RS03085 gamma-glutamyltransferase low > 97
Azospirillum sp. SherDot2 0.46 MPMX19_01202 Ribosomal RNA large subunit methyltransferase J 0.28 MPMX19_05752 Glutathione hydrolase proenzyme low > 112
Pseudomonas putida KT2440 0.44 PP_4945 23S rRNA m(6)A2030 methyltransferase 0.39 PP_3535 putative gamma-glutamyltransferase low > 96
Pseudomonas aeruginosa PA14 0.43 IKLFDK_28440 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.22 IKLFDK_06365 gamma-glutamyltransferase low > 100
Sinorhizobium meliloti 1021 0.43 SMc00608 hypothetical protein 0.24 SM_b20585 gamma-glutamyltranspeptidase low > 103
Agrobacterium fabrum C58 0.43 Atu1135 hypothetical protein 0.59 Atu5507 gamma-glutamyltranspeptidase low > 89
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS04360 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.23 ABZR87_RS19795 gamma-glutamyltransferase low > 80
Pseudomonas stutzeri RCH2 0.42 Psest_0408 Protein involved in catabolism of external DNA 0.21 Psest_1413 gamma-glutamyltranspeptidase low > 67
Pseudomonas sp. SVBP6 0.42 COO64_RS17660 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.22 COO64_RS02790 ggt gamma-glutamyltransferase low > 93
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS10595 competence protein ComJ 0.28 HSERO_RS05455 gamma-glutamyltranspeptidase low > 78
Rhizobium sp. OAE497 0.41 ABIE40_RS06520 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.23 ABIE40_RS16090 gamma-glutamyltransferase low > 107
Pseudomonas sp. BP01 0.41 JOY50_RS09970 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.39 JOY50_RS27455 ggt gamma-glutamyltransferase low > 84
Ralstonia solanacearum UW163 0.41 UW163_RS04530 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.38 UW163_RS06945 gamma-glutamyltransferase family protein — —
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS09065 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.38 RALBFv3_RS06680 gamma-glutamyltransferase family protein low > 76
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS23895 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.21 QEN71_RS14675 gamma-glutamyltransferase low > 153
Paraburkholderia graminis OAS925 0.41 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase 0.21 ABIE53_004289 gamma-glutamyltranspeptidase/glutathione hydrolase low > 113
Ralstonia solanacearum PSI07 0.41 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.39 RPSI07_RS10545 gamma-glutamyltransferase family protein low > 81
Ralstonia solanacearum GMI1000 0.40 RS_RS16875 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.36 RS_RS14630 gamma-glutamyltransferase family protein low > 80
Pseudomonas sp. DMC3 0.40 GFF3149 Ribosomal RNA large subunit methyltransferase J 0.39 GFF4505 Glutathione hydrolase proenzyme low > 89
Pseudomonas sp. S08-1 0.40 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase 0.12 OH686_14140 gamma-glutamyltransferase low > 80
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS06880 competence protein ComJ 0.22 BPHYT_RS21360 gamma-glutamyltranspeptidase low > 109
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS09005 competence protein ComJ 0.40 RR42_RS26175 gamma-glutamyltransferase low > 128
Pseudomonas sp. RS175 0.39 PFR28_05056 Ribosomal RNA large subunit methyltransferase J 0.40 PFR28_03672 Glutathione hydrolase proenzyme low > 88
Pseudomonas lactucae CFBP13502 0.39 GEMAOFIL_00676 Ribosomal RNA large subunit methyltransferase J 0.37 GEMAOFIL_00899 Glutathione hydrolase proenzyme low > 93
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_1481 Protein involved in catabolism of external DNA 0.39 Pf1N1B4_2898 Gamma-glutamyltranspeptidase (EC 2.3.2.2) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_4772 Protein of unknown function DUF519 0.22 Psyr_0691 gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03 low > 86
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_4772 Protein of unknown function DUF519 0.22 Psyr_0691 gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03 low > 86
Castellaniella sp019104865 MT123 0.38 ABCV34_RS03075 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.26 ABCV34_RS11415 gamma-glutamyltransferase low > 48
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_12840 lactate dehydrogenase 0.38 AO353_14670 gamma-glutamyltransferase low > 101
Rhodospirillum rubrum S1H 0.38 Rru_A1938 Protein of unknown function DUF519 (NCBI) 0.24 Rru_A0385 Gamma-glutamyltransferase (NCBI) low > 58
Pseudomonas fluorescens SBW25 0.38 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.37 PFLU_RS03510 gamma-glutamyltransferase low > 109
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_08990 lactate dehydrogenase 0.38 AO356_16305 gamma-glutamyltransferase low > 104
Pseudomonas simiae WCS417 0.38 PS417_02200 lactate dehydrogenase 0.38 PS417_03410 gamma-glutamyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.37 PFLU_RS03510 gamma-glutamyltransferase low > 109
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_219 Protein involved in catabolism of external DNA 0.39 PfGW456L13_1563 Gamma-glutamyltranspeptidase (EC 2.3.2.2) low > 87
Rhodanobacter sp000427505 FW510-R12 0.38 LRK53_RS08040 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.19 LRK53_RS15220 gamma-glutamyltransferase low > 59
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS21180 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.19 ABZR86_RS20010 gamma-glutamyltransferase low > 74
Bosea sp. OAE506 0.37 ABIE41_RS11490 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.45 ABIE41_RS04890 gamma-glutamyltransferase low > 77
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS02005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.19 LRK54_RS13360 gamma-glutamyltransferase low > 59
Rhodopseudomonas palustris CGA009 0.36 TX73_006025 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.24 TX73_000130 gamma-glutamyltransferase low > 86
Rhodanobacter denitrificans MT42 0.36 LRK55_RS01780 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.19 LRK55_RS13100 gamma-glutamyltransferase low > 63
Rhodanobacter sp. FW510-T8 0.36 OKGIIK_04560 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.19 OKGIIK_02600 ggt gamma-glutamyltransferase low > 53
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.1778.1 Protein involved in catabolism of external DNA 0.19 Xcc-8004.2158.1 Gamma-glutamyltranspeptidase (EC 2.3.2.2) low > 74
Alteromonas macleodii MIT1002 0.36 MIT1002_02015 Ribosomal RNA large subunit methyltransferase J 0.42 MIT1002_02259 Gamma-glutamyltranspeptidase precursor low > 70
Acinetobacter baumannii LAC-4 0.35 RR41_RS02490 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.31 RR41_RS14735 gamma-glutamyltransferase low > 55
Lysobacter sp. OAE881 0.33 ABIE51_RS14285 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.20 ABIE51_RS15105 gamma-glutamyltransferase low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF1683 Protein involved in catabolism of external DNA 0.37 GFF3824 Gamma-glutamyltranspeptidase (EC 2.3.2.2) low > 90
Variovorax sp. OAS795 0.32 ABID97_RS25005 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.24 ABID97_RS09895 gamma-glutamyltransferase low > 91
Xanthobacter sp. DMC5 0.32 GFF4654 Ribosomal RNA large subunit methyltransferase J 0.16 GFF3143 Glutathione hydrolase-like YwrD proenzyme — —
Marinobacter adhaerens HP15 0.31 HP15_2563 protein containing DUF519 0.25 HP15_1357 gamma-glutamyltranspeptidase periplasmic precursor low > 73
Variovorax sp. SCN45 0.31 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) 0.24 GFF3077 Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13) low > 127
Acidovorax sp. GW101-3H11 0.31 Ac3H11_3047 Protein involved in catabolism of external DNA 0.42 Ac3H11_4929 Gamma-glutamyltranspeptidase (EC 2.3.2.2) low > 79
Sphingobium sp. HT1-2 0.29 GFF540 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) 0.36 GFF978 Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13) low > 95
Phaeobacter inhibens DSM 17395 0.29 PGA1_c26480 Protein involved in catabolism of external DNA 0.53 PGA1_c28250 gamma-glutamyltranspeptidase Ggt low > 62
Caulobacter crescentus NA1000 0.25 CCNA_01152 external DNA uptake/catabolism protein 0.34 CCNA_00565 gamma-glutamyltranspeptidase low > 66
Caulobacter crescentus NA1000 Δfur 0.25 CCNA_01152 external DNA uptake/catabolism protein 0.34 CCNA_00565 gamma-glutamyltranspeptidase low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS02525 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.35 A4249_RS14305 gamma-glutamyltransferase family protein 0.75 17

Not shown: 5 genomes with orthologs for CSW01_01005 only; 10 genomes with orthologs for CSW01_01035 only