Conservation of cofitness between CSW01_04845 and CSW01_00650 in Vibrio cholerae E7946 ATCC 55056

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_04845 D-alanyl-D-alanine carboxypeptidase 1.0 CSW01_00650 tyrosine recombinase XerC 0.74 3
Shewanella sp. ANA-3 0.69 Shewana3_0991 penicillin-binding protein 6 (RefSeq) 0.47 Shewana3_0393 tyrosine recombinase XerC (RefSeq) low > 73
Shewanella oneidensis MR-1 0.69 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) 0.47 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) — —
Shewanella amazonensis SB2B 0.69 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.47 Sama_3247 integrase/recombinase XerC (RefSeq) — —
Shewanella loihica PV-4 0.68 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.44 Shew_0325 tyrosine recombinase XerC (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.62 MIT1002_01848 D-alanyl-D-alanine carboxypeptidase DacC precursor 0.45 MIT1002_00157 Tyrosine recombinase XerC — —
Pectobacterium carotovorum WPP14 0.58 HER17_RS15260 D-alanyl-D-alanine carboxypeptidase DacA 0.54 HER17_RS01350 tyrosine recombinase XerC low > 75
Pantoea sp. MT58 0.57 IAI47_14040 D-alanyl-D-alanine carboxypeptidase DacA 0.53 IAI47_18400 tyrosine recombinase XerC low > 76
Dickeya dianthicola 67-19 0.57 HGI48_RS06200 D-alanyl-D-alanine carboxypeptidase DacA 0.56 HGI48_RS20045 tyrosine recombinase XerC low > 71
Rahnella sp. WP5 0.57 EX31_RS23105 D-alanyl-D-alanine carboxypeptidase DacA 0.56 EX31_RS15165 tyrosine recombinase XerC low > 89
Dickeya dadantii 3937 0.57 DDA3937_RS06155 D-alanyl-D-alanine carboxypeptidase DacA 0.56 DDA3937_RS19890 tyrosine recombinase XerC — —
Pantoea agglomerans CFBP13505 P0401 0.56 PagCFBP13505_RS03265 D-alanyl-D-alanine carboxypeptidase DacA 0.53 PagCFBP13505_RS15380 tyrosine recombinase XerC — —
Erwinia tracheiphila SCR3 0.56 LU632_RS16390 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.53 LU632_RS24135 xerC tyrosine recombinase XerC — —
Erwinia tracheiphila HP pepo 2.2 0.56 IJEDHG_02480 D-alanyl-D-alanine carboxypeptidase DacC 0.53 IJEDHG_08780 xerC tyrosine recombinase XerC — —
Dickeya dianthicola ME23 0.56 DZA65_RS06545 D-alanyl-D-alanine carboxypeptidase DacA 0.56 DZA65_RS21090 tyrosine recombinase XerC low > 75
Serratia liquefaciens MT49 0.56 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA 0.55 IAI46_00725 tyrosine recombinase XerC low > 87
Klebsiella pneumoniae MKP103 0.55 KDGMDA_16380 D-alanyl-D-alanine carboxypeptidase DacA 0.53 KDGMDA_09700 tyrosine recombinase XerC low > 95
Erwinia amylovora T8 0.55 OLJFJH_17245 D-alanyl-D-alanine carboxypeptidase DacA 0.54 OLJFJH_06415 tyrosine recombinase XerC low > 58
Escherichia coli BL21 0.55 ECD_00601 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) 0.55 ECD_03687 site-specific tyrosine recombinase low > 61
Escherichia coli Nissle 1917 0.55 ECOLIN_RS03445 D-alanyl-D-alanine carboxypeptidase DacA 0.54 ECOLIN_RS21875 tyrosine recombinase XerC — —
Escherichia coli ECOR38 0.55 HEPCGN_00895 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.54 HEPCGN_13125 xerC tyrosine recombinase XerC low > 88
Escherichia coli BW25113 0.55 b0632 dacA D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI) 0.54 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) low > 76
Enterobacter sp. TBS_079 0.55 MPMX20_01291 D-alanyl-D-alanine carboxypeptidase DacA 0.52 MPMX20_04465 Tyrosine recombinase XerC low > 85
Klebsiella michiganensis M5al 0.55 BWI76_RS08020 serine-type D-Ala-D-Ala carboxypeptidase 0.55 BWI76_RS01210 tyrosine recombinase XerC low > 92
Escherichia coli ECRC99 0.55 KEDOAH_20590 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.55 KEDOAH_13730 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC102 0.55 NIAGMN_05435 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.55 NIAGMN_12175 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC98 0.55 JDDGAC_11025 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.55 JDDGAC_18045 xerC tyrosine recombinase XerC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_03074 D-alanyl-D-alanine carboxypeptidase DacA 0.54 OHPLBJKB_04239 Tyrosine recombinase XerC low > 74
Escherichia coli ECRC101 0.55 MCAODC_26595 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.55 MCAODC_04925 xerC tyrosine recombinase XerC — —
Escherichia coli ECRC100 0.55 OKFHMN_07380 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.55 OKFHMN_14420 xerC tyrosine recombinase XerC low > 79
Escherichia coli ECRC62 0.55 BNILDI_21765 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.54 BNILDI_04985 xerC tyrosine recombinase XerC low > 75
Escherichia coli ECOR27 0.55 NOLOHH_23755 dacA D-alanyl-D-alanine carboxypeptidase DacA 0.54 NOLOHH_06550 xerC tyrosine recombinase XerC low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF4545 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.55 GFF239 Tyrosine recombinase XerC — —
Enterobacter asburiae PDN3 0.55 EX28DRAFT_2331 D-alanyl-D-alanine carboxypeptidase 0.54 EX28DRAFT_4480 tyrosine recombinase XerC — —
Escherichia fergusonii Becca 0.54 EFB2_03460 D-alanyl-D-alanine carboxypeptidase DacA 0.54 EFB2_04826 Tyrosine recombinase XerC low > 86
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_0079 D-alanyl-D-alanine carboxypeptidase 0.45 B158DRAFT_0244 tyrosine recombinase XerC subunit — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas sp. RS175 0.47 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC 0.38 PFR28_04378 Tyrosine recombinase XerC low > 88
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_4361 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 0.39 Psyr_0185 tyrosine recombinase XerC subunit low > 86
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.38 AO356_12725 recombinase XerC low > 104
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.38 Pf1N1B4_2171 Tyrosine recombinase XerC — —
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.38 Pf6N2E2_4416 Tyrosine recombinase XerC 0.27 69
Pseudomonas segetis P6 0.46 ACVTMO_RS05235 D-alanyl-D-alanine carboxypeptidase family protein 0.40 ACVTMO_RS22525 xerC tyrosine recombinase XerC — —
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_06455 D-alanyl-D-alanine carboxypeptidase 0.38 AO353_09050 recombinase XerC low > 101
Pseudomonas sp. DMC3 0.46 GFF3884 D-alanyl-D-alanine carboxypeptidase DacC 0.38 GFF370 Tyrosine recombinase XerC low > 89
Pseudomonas sp. SVBP6 0.46 COO64_RS15590 D-alanyl-D-alanine carboxypeptidase family protein 0.39 COO64_RS01270 xerC tyrosine recombinase XerC low > 93
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.38 PfGW456L13_842 Tyrosine recombinase XerC — —
Pseudomonas stutzeri RCH2 0.46 Psest_0516 D-alanyl-D-alanine carboxypeptidase 0.40 Psest_3767 tyrosine recombinase XerC low > 67
Pseudomonas fluorescens SBW25 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.34 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas simiae WCS417 0.46 PS417_24705 D-alanyl-D-alanine carboxypeptidase 0.34 PS417_27595 recombinase XerC low > 88
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase 0.34 PFLU_RS29280 tyrosine recombinase XerC low > 109
Pseudomonas orientalis W4I3 0.46 QF045_RS26990 D-alanyl-D-alanine carboxypeptidase family protein 0.37 QF045_RS01960 tyrosine recombinase XerC — —
Pseudomonas lactucae CFBP13502 0.46 GEMAOFIL_05094 D-alanyl-D-alanine carboxypeptidase DacC 0.37 GEMAOFIL_05657 Tyrosine recombinase XerC low > 96
Pseudomonas sp. BP01 0.45 JOY50_RS17720 D-alanyl-D-alanine carboxypeptidase family protein 0.39 JOY50_RS22610 xerC tyrosine recombinase XerC low > 84
Pseudomonas putida KT2440 0.45 PP_4803 D-alanyl-D-alanine carboxypeptidase 0.39 PP_5230 Tyrosine recombinase XerC low > 96
Pseudomonas sp. S08-1 0.45 OH686_09300 D-alanyl-D-alanine carboxypeptidase 0.38 OH686_13785 tyrosine recombinase XerC low > 80
Marinobacter adhaerens HP15 0.45 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase 0.44 HP15_250 site-specific tyrosine recombinase XerC — —
Pseudomonas aeruginosa MRSN321 0.45 DY961_RS12860 D-alanyl-D-alanine carboxypeptidase family protein 0.40 DY961_RS12285 xerC;go_function=site-specific tyrosine recombinase XerC low > 100
Pseudomonas aeruginosa PUPa3 0.45 DQ20_RS48190 D-alanyl-D-alanine carboxypeptidase family protein 0.40 DQ20_RS49840 xerC;go_function=site-specific tyrosine recombinase XerC low > 101
Pseudomonas aeruginosa PA14 0.45 IKLFDK_20625 serine-type D-Ala-D-Ala carboxypeptidase 0.40 IKLFDK_27050 tyrosine recombinase XerC low > 98
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.40 Xcc-8004.847.1 Site-specific tyrosine recombinase — —
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase 0.37 OKGIIK_15325 xerC tyrosine recombinase XerC low > 53
Rhodanobacter sp000427505 FW510-R12 0.41 LRK53_RS17780 D-alanyl-D-alanine carboxypeptidase 0.37 LRK53_RS02315 tyrosine recombinase XerC — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase 0.37 LRK54_RS08535 tyrosine recombinase XerC low > 59
Rhodanobacter denitrificans MT42 0.41 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein 0.38 LRK55_RS08300 tyrosine recombinase XerC — —
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein 0.37 ABZR86_RS15025 tyrosine recombinase XerC — —
Lysobacter sp. OAE881 0.40 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein 0.38 ABIE51_RS03035 tyrosine recombinase XerC low > 62
Cupriavidus basilensis FW507-4G11 0.39 RR42_RS01680 cytochrome C550 0.31 RR42_RS00615 recombinase XerC low > 128
Methylophilus sp. DMC18 0.39 GFF2179 D-alanyl-D-alanine carboxypeptidase DacC 0.40 GFF1535 Tyrosine recombinase XerC low > 43
Dechlorosoma suillum PS 0.37 Dsui_0899 D-alanyl-D-alanine carboxypeptidase 0.37 Dsui_0651 tyrosine recombinase XerC low > 51
Burkholderia phytofirmans PsJN 0.37 BPHYT_RS02415 cytochrome C550 0.36 BPHYT_RS01655 tyrosine recombinase XerC — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase 0.35 RPSI07_RS23690 tyrosine recombinase XerC low > 81
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein 0.34 ABZR87_RS05065 tyrosine recombinase XerC low > 80
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 0.34 H281DRAFT_02202 integrase/recombinase XerC — —
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein 0.35 QEN71_RS00355 tyrosine recombinase XerC — —
Paraburkholderia graminis OAS925 0.36 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) 0.33 ABIE53_000426 integrase/recombinase XerC — —
Herbaspirillum seropedicae SmR1 0.35 HSERO_RS21530 cytochrome C550 0.35 HSERO_RS21475 recombinase XerC low > 78
Ralstonia solanacearum GMI1000 0.35 RS_RS01610 D-alanyl-D-alanine carboxypeptidase 0.34 RS_RS00260 Tyrosine recombinase XerC 1 low > 80
Castellaniella sp019104865 MT123 0.34 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein 0.34 ABCV34_RS13455 tyrosine recombinase XerC low > 48
Ralstonia solanacearum UW163 0.34 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase 0.33 UW163_RS03905 tyrosine recombinase XerC — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase 0.33 RALBFv3_RS09675 tyrosine recombinase XerC low > 76
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.31 GFF547 Tyrosine recombinase XerC low > 90
Azospirillum brasilense Sp245 0.33 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase 0.23 AZOBR_RS03965 tyrosine recombinase XerC — —
Acidovorax sp. GW101-3H11 0.32 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.31 Ac3H11_1995 Tyrosine recombinase XerC — —
Variovorax sp. OAS795 0.32 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein 0.33 ABID97_RS06150 tyrosine recombinase XerC low > 91
Bosea sp. OAE506 0.30 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein 0.21 ABIE41_RS07870 tyrosine recombinase XerC — —
Magnetospirillum magneticum AMB-1 0.30 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase 0.25 AMB_RS21485 tyrosine recombinase XerC — —
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase 0.22 Ga0059261_2764 Site-specific recombinase XerD — —
Rhodopseudomonas palustris CGA009 0.26 TX73_014370 D-alanyl-D-alanine carboxypeptidase 0.22 TX73_000945 tyrosine recombinase XerC low > 86
Agrobacterium fabrum C58 0.21 Atu1499 penicillin binding protein 0.24 Atu2628 site-specific recombinase — —

Not shown: 9 genomes with orthologs for CSW01_04845 only; 8 genomes with orthologs for CSW01_00650 only