Conservation of cofitness between BWI76_RS02575 and BWI76_RS25280 in Klebsiella michiganensis M5al

78 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Klebsiella michiganensis M5al 1.0 BWI76_RS02575 exoribonuclease R 1.0 BWI76_RS25280 RNase adaptor protein RapZ 0.25 14
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.90 GFF832 '3'-to-5' exoribonuclease RNase R' transl_table=11 0.98 GFF2949 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 78
Enterobacter asburiae PDN3 0.89 EX28DRAFT_3376 ribonuclease R 0.97 EX28DRAFT_3259 Predicted P-loop-containing kinase low > 76
Enterobacter sp. TBS_079 0.89 MPMX20_00460 Ribonuclease R 0.98 MPMX20_04111 RNase adapter protein RapZ low > 85
Escherichia coli Nissle 1917 0.88 ECOLIN_RS24265 ribonuclease R 0.97 ECOLIN_RS18440 RNase adapter RapZ low > 55
Escherichia fergusonii Becca 0.88 EFB2_04356 Ribonuclease R 0.97 EFB2_00618 RNase adapter protein RapZ low > 86
Escherichia coli BW25113 0.88 b4179 vacB putative enzyme (VIMSS) 0.97 b3205 yhbJ hypothetical protein (NCBI) low > 76
Escherichia coli BL21 0.88 ECD_04046 exoribonuclease R, RNase R 0.97 ECD_03070 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase low > 61
Escherichia coli ECOR27 0.88 NOLOHH_04485 rnr ribonuclease R 0.97 NOLOHH_09725 rapZ RNase adapter RapZ low > 75
Escherichia coli ECRC62 0.88 BNILDI_07005 rnr ribonuclease R 0.97 BNILDI_01810 rapZ RNase adapter RapZ low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.88 OHPLBJKB_03863 Ribonuclease R 0.97 OHPLBJKB_00495 RNase adapter protein RapZ low > 73
Escherichia coli ECRC102 0.88 NIAGMN_10070 rnr ribonuclease R 0.97 NIAGMN_15685 rapZ RNase adapter RapZ — —
Escherichia coli ECRC99 0.88 KEDOAH_15935 rnr ribonuclease R 0.97 KEDOAH_10225 rapZ RNase adapter RapZ — —
Escherichia coli ECRC101 0.88 MCAODC_02735 rnr ribonuclease R 0.97 MCAODC_08445 rapZ RNase adapter RapZ low > 87
Escherichia coli ECRC98 0.88 JDDGAC_15860 rnr ribonuclease R 0.97 JDDGAC_21550 rapZ RNase adapter RapZ 0.93 20
Escherichia coli ECOR38 0.88 HEPCGN_10450 rnr ribonuclease R 0.97 HEPCGN_16800 rapZ RNase adapter RapZ 0.87 19
Escherichia coli ECRC100 0.88 OKFHMN_12220 rnr ribonuclease R 0.97 OKFHMN_17925 rapZ RNase adapter RapZ 0.94 2
Pantoea sp. MT58 0.79 IAI47_02625 ribonuclease R 0.97 IAI47_17200 RNase adapter RapZ low > 76
Rahnella sp. WP5 0.77 EX31_RS08785 ribonuclease R 0.95 EX31_RS12385 RNase adapter RapZ low > 89
Erwinia tracheiphila SCR3 0.77 LU632_RS21750 rnr ribonuclease R 0.96 LU632_RS21295 rapZ RNase adapter RapZ low > 74
Serratia liquefaciens MT49 0.76 IAI46_01660 ribonuclease R 0.95 IAI46_22485 RNase adapter RapZ low > 86
Pectobacterium carotovorum WPP14 0.76 HER17_RS03835 ribonuclease R 0.96 HER17_RS20075 RNase adapter RapZ low > 75
Dickeya dadantii 3937 0.76 DDA3937_RS17260 ribonuclease R 0.96 DDA3937_RS01515 RNase adapter RapZ low > 74
Dickeya dianthicola 67-19 0.76 HGI48_RS17315 ribonuclease R 0.96 HGI48_RS01430 RNase adapter RapZ low > 71
Dickeya dianthicola ME23 0.76 DZA65_RS18405 ribonuclease R 0.96 DZA65_RS01495 RNase adapter RapZ low > 75
Vibrio cholerae E7946 ATCC 55056 0.62 CSW01_13155 ribonuclease R 0.60 CSW01_12830 RNase adaptor protein RapZ low > 62
Shewanella loihica PV-4 0.56 Shew_3289 ribonuclease R (RefSeq) 0.55 Shew_3314 hypothetical protein (RefSeq) — —
Shewanella sp. ANA-3 0.56 Shewana3_0697 RNAse R (RefSeq) 0.57 Shewana3_0669 hypothetical protein (RefSeq) low > 73
Shewanella oneidensis MR-1 0.55 SO3935 vacB ribonuclease R (NCBI ptt file) 0.57 SO3964 conserved hypothetical protein (NCBI ptt file) 0.59 9
Alteromonas macleodii MIT1002 0.54 MIT1002_03606 Ribonuclease R 0.59 MIT1002_00824 glmZ(sRNA)-inactivating NTPase low > 70
Shewanella amazonensis SB2B 0.53 Sama_3067 exoribonuclease II (RefSeq) 0.57 Sama_3091 hypothetical protein (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.50 B158DRAFT_1989 ribonuclease R 0.49 B158DRAFT_2077 Predicted P-loop-containing kinase low > 40
Pseudomonas sp. S08-1 0.49 OH686_15910 ribonuclease R 0.47 OH686_08560 RNase adapter protein RapZ low > 80
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_08610 exoribonuclease R 0.47 AO356_07050 glmZ(sRNA)-inactivating NTPase low > 104
Pseudomonas fluorescens FW300-N2E2 0.49 Pf6N2E2_3607 3'-to-5' exoribonuclease RNase R 0.47 Pf6N2E2_3270 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 103
Pseudomonas simiae WCS417 0.49 PS417_02555 exoribonuclease R 0.48 PS417_04330 glmZ(sRNA)-inactivating NTPase — —
Pseudomonas fluorescens FW300-N2E3 0.49 AO353_13200 exoribonuclease R 0.48 AO353_05195 glmZ(sRNA)-inactivating NTPase low > 101
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_0579 RNAse R 0.46 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 low > 86
Pseudomonas fluorescens SBW25 0.49 PFLU_RS02625 ribonuclease R 0.48 PFLU_RS04385 RNase adapter RapZ low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_0579 RNAse R 0.46 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 low > 86
Pseudomonas fluorescens SBW25-INTG 0.49 PFLU_RS02625 ribonuclease R 0.48 PFLU_RS04385 RNase adapter RapZ low > 109
Pseudomonas sp. RS175 0.48 PFR28_05130 Ribonuclease R 0.47 PFR28_00170 RNase adapter protein RapZ low > 88
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_144 3'-to-5' exoribonuclease RNase R 0.46 PfGW456L13_5017 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 87
Pseudomonas fluorescens FW300-N1B4 0.48 Pf1N1B4_1403 3'-to-5' exoribonuclease RNase R 0.48 Pf1N1B4_1083 Hypothetical ATP-binding protein UPF0042, contains P-loop — —
Pseudomonas stutzeri RCH2 0.48 Psest_0691 ribonuclease R 0.47 Psest_3316 Predicted P-loop-containing kinase low > 67
Pseudomonas putida KT2440 0.48 PP_4880 exoribonuclease R 0.47 PP_0949 putative ATP-binding protein UPF0042 low > 96
Marinobacter adhaerens HP15 0.44 HP15_622 exoribonuclease R 0.51 HP15_2445 protein yhbJ low > 73
Dechlorosoma suillum PS 0.44 Dsui_3128 ribonuclease R 0.40 Dsui_0990 putative P-loop-containing kinase low > 51
Rhodanobacter denitrificans MT42 0.42 LRK55_RS00235 ribonuclease R 0.45 LRK55_RS12560 RNase adapter RapZ low > 63
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS00495 ribonuclease R 0.45 LRK54_RS12860 RNase adapter RapZ low > 59
Lysobacter sp. OAE881 0.42 ABIE51_RS07475 ribonuclease R 0.45 ABIE51_RS15975 RNase adapter RapZ low > 62
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_06755 rnr ribonuclease R 0.45 OKGIIK_02250 rapZ RNase adapter RapZ 0.82 39
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS13065 ribonuclease R 0.43 RR42_RS02060 nucleotide-binding protein low > 128
Ralstonia solanacearum PSI07 0.42 RPSI07_RS18030 ribonuclease R 0.44 RPSI07_RS22155 RNase adapter RapZ low > 81
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS10985 ribonuclease R 0.44 ABZR87_RS07035 RNase adapter RapZ low > 80
Ralstonia solanacearum GMI1000 0.41 RS_RS06155 ribonuclease R 0.44 RS_RS01995 RNase adaptor protein RapZ low > 80
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS15345 ribonuclease R 0.44 RALBFv3_RS11145 RNase adapter RapZ low > 76
Ralstonia solanacearum UW163 0.41 UW163_RS12810 ribonuclease R 0.44 UW163_RS02435 RNase adapter RapZ — —
Paraburkholderia graminis OAS925 0.41 ABIE53_001940 ribonuclease R 0.39 ABIE53_000714 UPF0042 nucleotide-binding protein low > 113
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_00712 RNAse R 0.41 H281DRAFT_01931 UPF0042 nucleotide-binding protein low > 103
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS22925 ribonuclease R 0.42 QEN71_RS01735 RNase adapter RapZ low > 153
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS08455 ribonuclease R 0.41 BPHYT_RS02885 glmZ(sRNA)-inactivating NTPase low > 109
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.3370.1 3'-to-5' exoribonuclease RNase R 0.44 Xcc-8004.1658.1 hypothetical protein low > 74
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS08270 ribonuclease R 0.45 ABZR86_RS19800 RNase adapter RapZ low > 74
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS09290 ribonuclease R 0.40 HSERO_RS19535 nucleotide-binding protein low > 78
Castellaniella sp019104865 MT123 0.37 ABCV34_RS06625 ribonuclease R 0.39 ABCV34_RS14330 RNase adapter RapZ low > 48
Acinetobacter radioresistens SK82 0.35 MPMX26_02684 Ribonuclease R 0.42 MPMX26_00547 RNase adapter protein RapZ low > 36
Acidovorax sp. GW101-3H11 0.35 Ac3H11_412 3'-to-5' exoribonuclease RNase R 0.42 Ac3H11_3459 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.35 GFF4921 3'-to-5' exoribonuclease RNase R 0.42 GFF828 Hypothetical ATP-binding protein UPF0042, contains P-loop low > 90
Variovorax sp. SCN45 0.35 GFF399 3'-to-5' exoribonuclease RNase R 0.40 GFF2356 RNase adapter protein RapZ low > 127
Variovorax sp. OAS795 0.35 ABID97_RS17200 ribonuclease R 0.39 ABID97_RS23710 RNase adapter RapZ low > 91
Azospirillum brasilense Sp245 0.25 AZOBR_RS16165 ribonuclease R 0.36 AZOBR_RS30485 nucleotide-binding protein low > 97
Magnetospirillum magneticum AMB-1 0.24 AMB_RS04465 ribonuclease R 0.36 AMB_RS22235 RNase adaptor protein RapZ low > 64
Desulfovibrio vulgaris Hildenborough JW710 0.24 DVU2467 rnr ribonuclease R (TIGR) 0.37 DVU1631 conserved hypothetical protein (TIGR) 0.30 48
Rhodospirillum rubrum S1H 0.23 Rru_A3203 ribonuclease R (NCBI) 0.36 Rru_A3448 Uncharacterized P-loop ATPase protein UPF0042 (NCBI) low > 58
Azospirillum sp. SherDot2 0.23 MPMX19_01812 Ribonuclease R 0.36 MPMX19_02622 Nucleotide-binding protein low > 112
Phaeobacter inhibens DSM 17395 0.23 PGA1_c36430 putative ribonuclease R 0.34 PGA1_c01180 Predicted P-loop-containing kinase low > 62
Sphingomonas koreensis DSMZ 15582 0.20 Ga0059261_3266 ribonuclease R 0.31 Ga0059261_0917 Predicted P-loop-containing kinase low > 68
Dinoroseobacter shibae DFL-12 0.19 Dshi_0015 ribonuclease R (RefSeq) 0.34 Dshi_0209 hypothetical protein (RefSeq) low > 64

Not shown: 15 genomes with orthologs for BWI76_RS02575 only; 4 genomes with orthologs for BWI76_RS25280 only