| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Klebsiella michiganensis M5al | 1.0 | BWI76_RS00755 | | ATP-dependent protease subunit HslV | 1.0 | BWI76_RS25280 | | RNase adaptor protein RapZ | 0.40 | 14 |
| Escherichia coli BW25113 | 0.96 | b3932 | hslV | ATP-dependent protease peptidase subunit (NCBI) | 0.97 | b3205 | yhbJ | hypothetical protein (NCBI) | low | > 76 |
| Enterobacter asburiae PDN3 | 0.96 | EX28DRAFT_4405 | | ATP-dependent protease HslVU, peptidase subunit | 0.97 | EX28DRAFT_3259 | | Predicted P-loop-containing kinase | low | > 76 |
| Escherichia coli Nissle 1917 | 0.96 | ECOLIN_RS22640 | | ATP-dependent protease subunit HslV | 0.97 | ECOLIN_RS18440 | | RNase adapter RapZ | low | > 55 |
| Escherichia fergusonii Becca | 0.96 | EFB2_04686 | | ATP-dependent protease subunit HslV | 0.97 | EFB2_00618 | | RNase adapter protein RapZ | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.96 | OHPLBJKB_04119 | | ATP-dependent protease subunit HslV | 0.97 | OHPLBJKB_00495 | | RNase adapter protein RapZ | low | > 73 |
| Escherichia coli BL21 | 0.96 | ECD_03817 | | peptidase component of the HslUV protease | 0.97 | ECD_03070 | | adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase | low | > 61 |
| Escherichia coli ECRC98 | 0.96 | JDDGAC_17360 | hslV | ATP-dependent protease subunit HslV | 0.97 | JDDGAC_21550 | rapZ | RNase adapter RapZ | low | > 86 |
| Escherichia coli ECOR38 | 0.96 | HEPCGN_12380 | hslV | ATP-dependent protease subunit HslV | 0.97 | HEPCGN_16800 | rapZ | RNase adapter RapZ | low | > 87 |
| Escherichia coli ECRC101 | 0.96 | MCAODC_04235 | hslV | ATP-dependent protease subunit HslV | 0.97 | MCAODC_08445 | rapZ | RNase adapter RapZ | low | > 87 |
| Escherichia coli ECRC99 | 0.96 | KEDOAH_14425 | hslV | ATP-dependent protease subunit HslV | 0.97 | KEDOAH_10225 | rapZ | RNase adapter RapZ | — | — |
| Escherichia coli ECRC100 | 0.96 | OKFHMN_13735 | hslV | ATP-dependent protease subunit HslV | 0.97 | OKFHMN_17925 | rapZ | RNase adapter RapZ | 0.85 | 4 |
| Escherichia coli ECRC102 | 0.96 | NIAGMN_11490 | hslV | ATP-dependent protease subunit HslV | 0.97 | NIAGMN_15685 | rapZ | RNase adapter RapZ | — | — |
| Enterobacter sp. TBS_079 | 0.96 | MPMX20_04537 | | ATP-dependent protease subunit HslV | 0.98 | MPMX20_04111 | | RNase adapter protein RapZ | low | > 85 |
| Escherichia coli ECOR27 | 0.96 | NOLOHH_05880 | hslV | ATP-dependent protease subunit HslV | 0.97 | NOLOHH_09725 | rapZ | RNase adapter RapZ | low | > 75 |
| Escherichia coli ECRC62 | 0.95 | BNILDI_05650 | hslV | ATP-dependent protease subunit HslV | 0.97 | BNILDI_01810 | rapZ | RNase adapter RapZ | low | > 75 |
| Rahnella sp. WP5 | 0.94 | EX31_RS14240 | | ATP-dependent protease subunit HslV | 0.95 | EX31_RS12385 | | RNase adapter RapZ | low | > 89 |
| Serratia liquefaciens MT49 | 0.94 | IAI46_24570 | | ATP-dependent protease subunit HslV | 0.95 | IAI46_22485 | | RNase adapter RapZ | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.94 | LU632_RS19670 | hslV | ATP-dependent protease subunit HslV | 0.96 | LU632_RS21295 | rapZ | RNase adapter RapZ | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.94 | HER17_RS00855 | | ATP-dependent protease subunit HslV | 0.96 | HER17_RS20075 | | RNase adapter RapZ | low | > 75 |
| Dickeya dadantii 3937 | 0.93 | DDA3937_RS00920 | | ATP-dependent protease subunit HslV | 0.96 | DDA3937_RS01515 | | RNase adapter RapZ | low | > 74 |
| Dickeya dianthicola ME23 | 0.93 | DZA65_RS21500 | | ATP-dependent protease subunit HslV | 0.96 | DZA65_RS01495 | | RNase adapter RapZ | low | > 75 |
| Dickeya dianthicola 67-19 | 0.93 | HGI48_RS20455 | | ATP-dependent protease subunit HslV | 0.96 | HGI48_RS01430 | | RNase adapter RapZ | low | > 71 |
| Pantoea sp. MT58 | 0.92 | IAI47_00850 | | ATP-dependent protease subunit HslV | 0.97 | IAI47_17200 | | RNase adapter RapZ | low | > 76 |
| Shewanella amazonensis SB2B | 0.83 | Sama_0441 | | ATP-dependent protease peptidase subunit (RefSeq) | 0.57 | Sama_3091 | | hypothetical protein (RefSeq) | low | > 62 |
| Vibrio cholerae E7946 ATCC 55056 | 0.82 | CSW01_13515 | | HslU--HslV peptidase proteolytic subunit | 0.60 | CSW01_12830 | | RNase adaptor protein RapZ | low | > 62 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.82 | GFF2314 | | ATP-dependent protease HslV (EC 3.4.25.-) | 0.98 | GFF2949 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | low | > 78 |
| Shewanella loihica PV-4 | 0.82 | Shew_0375 | | ATP-dependent protease peptidase subunit (RefSeq) | 0.55 | Shew_3314 | | hypothetical protein (RefSeq) | — | — |
| Kangiella aquimarina DSM 16071 | 0.78 | B158DRAFT_0748 | | ATP-dependent protease HslVU, peptidase subunit | 0.49 | B158DRAFT_2077 | | Predicted P-loop-containing kinase | 0.43 | 39 |
| Shewanella sp. ANA-3 | 0.77 | Shewana3_3699 | | ATP-dependent protease peptidase subunit (RefSeq) | 0.57 | Shewana3_0669 | | hypothetical protein (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.77 | SO4162 | hslV | ATP-dependent protease HslV (NCBI ptt file) | 0.57 | SO3964 | | conserved hypothetical protein (NCBI ptt file) | low | > 76 |
| Marinobacter adhaerens HP15 | 0.75 | HP15_466 | | ATP-dependent protease peptidase subunit | 0.51 | HP15_2445 | | protein yhbJ | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.74 | MIT1002_03660 | | ATP-dependent protease subunit HslV | 0.59 | MIT1002_00824 | | glmZ(sRNA)-inactivating NTPase | low | > 70 |
| Pseudomonas fluorescens SBW25-INTG | 0.74 | PFLU_RS01965 | | ATP-dependent protease subunit HslV | 0.48 | PFLU_RS04385 | | RNase adapter RapZ | 0.31 | 35 |
| Pseudomonas fluorescens SBW25 | 0.74 | PFLU_RS01965 | | ATP-dependent protease subunit HslV | 0.48 | PFLU_RS04385 | | RNase adapter RapZ | 0.63 | 10 |
| Pseudomonas simiae WCS417 | 0.74 | PS417_01920 | | ATP-dependent protease subunit HslV | 0.48 | PS417_04330 | | glmZ(sRNA)-inactivating NTPase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.73 | Pf1N1B4_1552 | | ATP-dependent protease HslV (EC 3.4.25.-) | 0.48 | Pf1N1B4_1083 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.73 | AO353_12430 | | ATP-dependent protease subunit HslV | 0.48 | AO353_05195 | | glmZ(sRNA)-inactivating NTPase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.72 | ABZR86_RS15035 | | ATP-dependent protease subunit HslV | 0.45 | ABZR86_RS19800 | | RNase adapter RapZ | low | > 74 |
| Pseudomonas putida KT2440 | 0.70 | PP_5000 | | peptidase component of the ATP-dependent HslVU protease | 0.47 | PP_0949 | | putative ATP-binding protein UPF0042 | 0.14 | 21 |
| Variovorax sp. SCN45 | 0.70 | GFF4484 | | ATP-dependent protease subunit HslV (EC 3.4.25.2) | 0.40 | GFF2356 | | RNase adapter protein RapZ | low | > 127 |
| Rhodanobacter denitrificans FW104-10B01 | 0.69 | LRK54_RS08525 | | ATP-dependent protease subunit HslV | 0.45 | LRK54_RS12860 | | RNase adapter RapZ | — | — |
| Rhodanobacter denitrificans MT42 | 0.69 | LRK55_RS08290 | | ATP-dependent protease subunit HslV | 0.45 | LRK55_RS12560 | | RNase adapter RapZ | — | — |
| Rhodanobacter sp. FW510-T8 | 0.69 | OKGIIK_15320 | hslV | ATP-dependent protease subunit HslV | 0.45 | OKGIIK_02250 | rapZ | RNase adapter RapZ | — | — |
| Dechlorosoma suillum PS | 0.69 | Dsui_0581 | | ATP-dependent protease HslVU, peptidase subunit | 0.40 | Dsui_0990 | | putative P-loop-containing kinase | low | > 51 |
| Pseudomonas stutzeri RCH2 | 0.69 | Psest_3936 | | ATP-dependent protease HslVU, peptidase subunit | 0.47 | Psest_3316 | | Predicted P-loop-containing kinase | low | > 67 |
| Variovorax sp. OAS795 | 0.69 | ABID97_RS06180 | | ATP-dependent protease subunit HslV | 0.39 | ABID97_RS23710 | | RNase adapter RapZ | low | > 91 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.68 | Psyr_0395 | | HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B | 0.46 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | 0.27 | 41 |
| Pseudomonas syringae pv. syringae B728a | 0.68 | Psyr_0395 | | HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B | 0.46 | Psyr_4150 | | Uncharacterized P-loop ATPase protein UPF0042 | low | > 86 |
| Acidovorax sp. GW101-3H11 | 0.68 | Ac3H11_2004 | | ATP-dependent protease HslV (EC 3.4.25.-) | 0.42 | Ac3H11_3459 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | low | > 79 |
| Pseudomonas sp. S08-1 | 0.68 | OH686_10095 | | ATP-dependent protease HslVU, peptidase subunit | 0.47 | OH686_08560 | | RNase adapter protein RapZ | low | > 80 |
| Pseudomonas sp. RS175 | 0.68 | PFR28_04999 | | ATP-dependent protease subunit HslV | 0.47 | PFR28_00170 | | RNase adapter protein RapZ | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.67 | PfGW456L13_289 | | ATP-dependent protease HslV (EC 3.4.25.-) | 0.46 | PfGW456L13_5017 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.66 | Pf6N2E2_3769 | | ATP-dependent protease HslV (EC 3.4.25.-) | 0.47 | Pf6N2E2_3270 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.66 | AO356_09455 | | ATP-dependent protease subunit HslV | 0.47 | AO356_07050 | | glmZ(sRNA)-inactivating NTPase | low | > 104 |
| Castellaniella sp019104865 MT123 | 0.66 | ABCV34_RS13415 | | ATP-dependent protease subunit HslV | 0.39 | ABCV34_RS14330 | | RNase adapter RapZ | low | > 48 |
| Cupriavidus basilensis FW507-4G11 | 0.64 | RR42_RS01060 | | peptidase | 0.43 | RR42_RS02060 | | nucleotide-binding protein | low | > 128 |
| Rhodospirillum rubrum S1H | 0.63 | Rru_A3599 | | 20S proteasome, A and B subunits (NCBI) | 0.36 | Rru_A3448 | | Uncharacterized P-loop ATPase protein UPF0042 (NCBI) | low | > 58 |
| Paraburkholderia sabiae LMG 24235 | 0.63 | QEN71_RS00335 | | ATP-dependent protease subunit HslV | 0.42 | QEN71_RS01735 | | RNase adapter RapZ | low | > 153 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.62 | GFF552 | | ATP-dependent protease HslV (EC 3.4.25.-) | 0.42 | GFF828 | | Hypothetical ATP-binding protein UPF0042, contains P-loop | low | > 90 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.62 | H281DRAFT_02206 | | HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B | 0.41 | H281DRAFT_01931 | | UPF0042 nucleotide-binding protein | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.62 | HSERO_RS00910 | | peptidase | 0.40 | HSERO_RS19535 | | nucleotide-binding protein | low | > 78 |
| Burkholderia phytofirmans PsJN | 0.62 | BPHYT_RS01635 | | ATP-dependent protease subunit HslV | 0.41 | BPHYT_RS02885 | | glmZ(sRNA)-inactivating NTPase | — | — |
| Paraburkholderia graminis OAS925 | 0.62 | ABIE53_000422 | | ATP-dependent HslUV protease subunit HslV | 0.39 | ABIE53_000714 | | UPF0042 nucleotide-binding protein | low | > 113 |
| Sphingomonas koreensis DSMZ 15582 | 0.61 | Ga0059261_3341 | | ATP-dependent protease HslVU, peptidase subunit | 0.31 | Ga0059261_0917 | | Predicted P-loop-containing kinase | low | > 68 |
| Azospirillum brasilense Sp245 | 0.60 | AZOBR_RS01655 | | peptidase | 0.36 | AZOBR_RS30485 | | nucleotide-binding protein | — | — |
| Ralstonia sp. UNC404CL21Col | 0.60 | ABZR87_RS05115 | | ATP-dependent protease subunit HslV | 0.44 | ABZR87_RS07035 | | RNase adapter RapZ | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.59 | RS_RS00215 | | HslU--HslV peptidase proteolytic subunit | 0.44 | RS_RS01995 | | RNase adaptor protein RapZ | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.59 | RALBFv3_RS09630 | | ATP-dependent protease subunit HslV | 0.44 | RALBFv3_RS11145 | | RNase adapter RapZ | low | > 76 |
| Ralstonia solanacearum UW163 | 0.59 | UW163_RS03950 | | ATP-dependent protease subunit HslV | 0.44 | UW163_RS02435 | | RNase adapter RapZ | — | — |
| Ralstonia solanacearum PSI07 | 0.59 | RPSI07_RS23735 | | ATP-dependent protease subunit HslV | 0.44 | RPSI07_RS22155 | | RNase adapter RapZ | low | > 81 |
| Lysobacter sp. OAE881 | 0.58 | ABIE51_RS03040 | | ATP-dependent protease subunit HslV | 0.45 | ABIE51_RS15975 | | RNase adapter RapZ | low | > 62 |
| Desulfovibrio vulgaris Miyazaki F | 0.56 | DvMF_0485 | | ATP-dependent protease peptidase subunit (RefSeq) | 0.36 | DvMF_0424 | | hypothetical protein (RefSeq) | low | > 51 |
| Azospirillum sp. SherDot2 | 0.55 | MPMX19_02548 | | ATP-dependent protease subunit HslV | 0.36 | MPMX19_02622 | | Nucleotide-binding protein | low | > 112 |
| Dinoroseobacter shibae DFL-12 | 0.55 | Dshi_3440 | | 20S proteasome A and B subunits (RefSeq) | 0.34 | Dshi_0209 | | hypothetical protein (RefSeq) | low | > 64 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.54 | DVU1577 | hslV | ATP-dependent protease hslV (TIGR) | 0.37 | DVU1631 | | conserved hypothetical protein (TIGR) | low | > 55 |
| Magnetospirillum magneticum AMB-1 | 0.53 | AMB_RS22950 | | HslU--HslV peptidase proteolytic subunit | 0.36 | AMB_RS22235 | | RNase adaptor protein RapZ | low | > 64 |
| Phaeobacter inhibens DSM 17395 | 0.53 | PGA1_c35260 | | ATP-dependent protease HslV | 0.34 | PGA1_c01180 | | Predicted P-loop-containing kinase | low | > 62 |
Not shown: 10 genomes with orthologs for BWI76_RS00755 only; 5 genomes with orthologs for BWI76_RS25280 only