| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Klebsiella michiganensis M5al | 1.0 | BWI76_RS06530 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 1.0 | BWI76_RS00390 | | two-component system sensor histidine kinase NtrB | 0.37 | 20 |
| Escherichia coli ECOR38 | 0.98 | HEPCGN_06945 | clpX | ATP-dependent protease ATP-binding subunit ClpX | 0.93 | HEPCGN_12735 | glnL | nitrogen regulation protein NR(II) | low | > 87 |
| Escherichia coli ECRC99 | 0.98 | KEDOAH_19635 | clpX | ATP-dependent protease ATP-binding subunit ClpX | 0.94 | KEDOAH_14045 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia coli BL21 | 0.98 | ECD_00389 | | ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease | 0.94 | ECD_03754 | | sensory histidine kinase in two-component regulatory system with GlnG | low | > 61 |
| Escherichia coli BW25113 | 0.98 | b0438 | clpX | ATP-dependent protease ATP-binding subunit (NCBI) | 0.94 | b3869 | glnL | sensory histidine kinase in two-component regulatory system with GlnG (NCBI) | low | > 76 |
| Escherichia coli ECRC100 | 0.98 | OKFHMN_08330 | clpX | ATP-dependent protease ATP-binding subunit ClpX | 0.94 | OKFHMN_14105 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia coli ECRC98 | 0.98 | JDDGAC_11985 | clpX | ATP-dependent protease ATP-binding subunit ClpX | 0.94 | JDDGAC_17730 | glnL | nitrogen regulation protein NR(II) | low | > 86 |
| Escherichia fergusonii Becca | 0.98 | EFB2_03619 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.93 | EFB2_04747 | | Sensory histidine kinase/phosphatase NtrB | low | > 86 |
| Escherichia coli ECRC102 | 0.98 | NIAGMN_06385 | clpX | ATP-dependent protease ATP-binding subunit ClpX | 0.94 | NIAGMN_11860 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.98 | OHPLBJKB_03235 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.94 | OHPLBJKB_04183 | | Sensory histidine kinase/phosphatase NtrB | low | > 73 |
| Escherichia coli ECRC101 | 0.98 | MCAODC_27555 | clpX | ATP-dependent protease ATP-binding subunit ClpX | 0.94 | MCAODC_04605 | glnL | nitrogen regulation protein NR(II) | low | > 87 |
| Escherichia coli Nissle 1917 | 0.98 | ECOLIN_RS02630 | | ATP-dependent protease ATP-binding subunit ClpX | 0.93 | ECOLIN_RS22300 | | nitrogen regulation protein NR(II) | low | > 55 |
| Escherichia coli ECOR27 | 0.98 | NOLOHH_01265 | clpX | ATP-dependent protease ATP-binding subunit ClpX | 0.94 | NOLOHH_06235 | glnL | nitrogen regulation protein NR(II) | — | — |
| Escherichia coli ECRC62 | 0.98 | BNILDI_22680 | clpX | ATP-dependent protease ATP-binding subunit ClpX | 0.94 | BNILDI_05295 | glnL | nitrogen regulation protein NR(II) | low | > 75 |
| Enterobacter sp. TBS_079 | 0.97 | MPMX20_01029 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.96 | MPMX20_04596 | | Sensory histidine kinase/phosphatase NtrB | low | > 85 |
| Enterobacter asburiae PDN3 | 0.97 | EX28DRAFT_2533 | | endopeptidase Clp ATP-binding regulatory subunit (clpX) | 0.96 | EX28DRAFT_4351 | | Signal transduction histidine kinase, nitrogen specific | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.97 | GFF4354 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.94 | GFF2221 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | low | > 78 |
| Pantoea sp. MT58 | 0.95 | IAI47_14650 | | ATP-dependent protease ATP-binding subunit ClpX | 0.90 | IAI47_00455 | | nitrogen regulation protein NR(II) | — | — |
| Rahnella sp. WP5 | 0.95 | EX31_RS22250 | | ATP-dependent protease ATP-binding subunit ClpX | 0.90 | EX31_RS15875 | | nitrogen regulation protein NR(II) | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.94 | LU632_RS18340 | clpX | ATP-dependent protease ATP-binding subunit ClpX | 0.91 | LU632_RS22140 | glnL | nitrogen regulation protein NR(II) | — | — |
| Serratia liquefaciens MT49 | 0.94 | IAI46_05015 | | ATP-dependent protease ATP-binding subunit ClpX | 0.90 | IAI46_24955 | | nitrogen regulation protein NR(II) | 0.59 | 80 |
| Pectobacterium carotovorum WPP14 | 0.93 | HER17_RS15845 | | ATP-dependent protease ATP-binding subunit ClpX | 0.85 | HER17_RS21435 | | nitrogen regulation protein NR(II) | — | — |
| Dickeya dadantii 3937 | 0.93 | DDA3937_RS05645 | | ATP-dependent protease ATP-binding subunit ClpX | 0.86 | DDA3937_RS00130 | | nitrogen regulation protein NR(II) | low | > 74 |
| Dickeya dianthicola 67-19 | 0.92 | HGI48_RS05690 | | ATP-dependent protease ATP-binding subunit ClpX | 0.86 | HGI48_RS21230 | | nitrogen regulation protein NR(II) | low | > 71 |
| Dickeya dianthicola ME23 | 0.92 | DZA65_RS06015 | | ATP-dependent protease ATP-binding subunit ClpX | 0.86 | DZA65_RS22205 | | nitrogen regulation protein NR(II) | — | — |
| Alteromonas macleodii MIT1002 | 0.84 | MIT1002_02759 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.43 | MIT1002_03185 | | Nitrogen regulation protein NR(II) | low | > 70 |
| Vibrio cholerae E7946 ATCC 55056 | 0.84 | CSW01_09610 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.55 | CSW01_13860 | | nitrogen regulation protein NR(II) | — | — |
| Shewanella sp. ANA-3 | 0.84 | Shewana3_2660 | clpX | ATP-dependent protease ATP-binding subunit ClpX (RefSeq) | 0.47 | Shewana3_0259 | | signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) | low | > 73 |
| Shewanella amazonensis SB2B | 0.83 | Sama_1225 | clpX | ATP-dependent protease ATP-binding subunit ClpX (RefSeq) | 0.45 | Sama_3426 | | nitrogen regulation protein (RefSeq) | low | > 62 |
| Shewanella oneidensis MR-1 | 0.83 | SO1795 | clpX | ATP-dependent Clp protease, ATP-binding subunit ClpX (NCBI ptt file) | 0.47 | SO4471 | ntrB | nitrogen regulation protein (NCBI ptt file) | 0.56 | 21 |
| Shewanella loihica PV-4 | 0.82 | Shew_2507 | clpX | ATP-dependent protease ATP-binding subunit (RefSeq) | 0.45 | Shew_3560 | | signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) | — | — |
| Marinobacter adhaerens HP15 | 0.76 | HP15_2184 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.39 | HP15_426 | | signal transduction histidine kinase, nitrogen specific, NtrB | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.75 | Psyr_1748 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.43 | Psyr_4821 | | PAS/PAC sensor signal transduction histidine kinase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.75 | Psyr_1748 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.43 | Psyr_4821 | | PAS/PAC sensor signal transduction histidine kinase | low | > 86 |
| Pseudomonas putida KT2440 | 0.75 | PP_2301 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.43 | PP_5047 | | two-component system sensory histidine kinase/phosphatase GlnL/GlnG | — | — |
| Pseudomonas sp. RS175 | 0.75 | PFR28_01229 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.42 | PFR28_04945 | | Sensory histidine kinase/phosphatase NtrB | — | — |
| Pseudomonas stutzeri RCH2 | 0.75 | Psest_2286 | | endopeptidase Clp ATP-binding regulatory subunit (clpX) | 0.40 | Psest_3931 | | Signal transduction histidine kinase, nitrogen specific | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.75 | AO356_01745 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.42 | AO356_09725 | | histidine kinase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.75 | Pf6N2E2_2217 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.42 | Pf6N2E2_3825 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.75 | PfGW456L13_2553 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.42 | PfGW456L13_346 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.75 | Pf1N1B4_3946 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.42 | Pf1N1B4_1610 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.75 | AO353_20180 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.42 | AO353_12150 | | histidine kinase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.75 | ABZR86_RS07325 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.26 | ABZR86_RS15510 | | ATP-binding protein | — | — |
| Pseudomonas sp. S08-1 | 0.75 | OH686_03640 | | ATP-dependent Clp protease, ATP-binding subunit ClpX | 0.41 | OH686_10635 | | Nitrogen regulation protein NtrB | low | > 80 |
| Pseudomonas fluorescens SBW25-INTG | 0.74 | PFLU_RS19165 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.42 | PFLU_RS01690 | | nitrogen regulation protein NR(II) | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.74 | PFLU_RS19165 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.42 | PFLU_RS01690 | | nitrogen regulation protein NR(II) | low | > 109 |
| Pseudomonas simiae WCS417 | 0.74 | PS417_17230 | | Clp protease ATP-binding protein | 0.43 | PS417_01640 | | histidine kinase | — | — |
| Kangiella aquimarina DSM 16071 | 0.74 | B158DRAFT_1037 | | endopeptidase Clp ATP-binding regulatory subunit (clpX) | 0.28 | B158DRAFT_0715 | | Signal transduction histidine kinase, nitrogen specific | low | > 40 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.74 | Xcc-8004.4047.1 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.23 | Xcc-8004.251.1 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | — | — |
| Lysobacter sp. OAE881 | 0.74 | ABIE51_RS14150 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.26 | ABIE51_RS01365 | | ATP-binding protein | — | — |
| Rhodanobacter sp. FW510-T8 | 0.74 | OKGIIK_08035 | clpX | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.26 | OKGIIK_14470 | | PAS domain-containing sensor histidine kinase | — | — |
| Rhodanobacter denitrificans MT42 | 0.73 | LRK55_RS16455 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.22 | LRK55_RS07735 | | ATP-binding protein | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.73 | LRK54_RS16730 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.22 | LRK54_RS07985 | | ATP-binding protein | low | > 59 |
| Dechlorosoma suillum PS | 0.73 | Dsui_2197 | | endopeptidase Clp ATP-binding regulatory subunit ClpX | 0.39 | Dsui_1050 | | signal transduction histidine kinase, nitrogen specific | low | > 51 |
| Variovorax sp. SCN45 | 0.72 | GFF488 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.33 | GFF3067 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | 0.88 | 56 |
| Paraburkholderia graminis OAS925 | 0.72 | ABIE53_002116 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.33 | ABIE53_002805 | | two-component system nitrogen regulation sensor histidine kinase GlnL | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.72 | H281DRAFT_00897 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.33 | H281DRAFT_00453 | | two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL | — | — |
| Burkholderia phytofirmans PsJN | 0.72 | BPHYT_RS09455 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.33 | BPHYT_RS12940 | | signal transduction histidine kinase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.72 | QEN71_RS21980 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.32 | QEN71_RS05670 | | nitrogen regulation protein NR(II) | low | > 153 |
| Acidovorax sp. GW101-3H11 | 0.71 | Ac3H11_936 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.35 | Ac3H11_4431 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | — | — |
| Ralstonia solanacearum PSI07 | 0.71 | RPSI07_RS16130 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.35 | RPSI07_RS17820 | | PAS domain-containing sensor histidine kinase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.71 | RS_RS08650 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.36 | RS_RS06315 | | PAS domain-containing sensor histidine kinase | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.71 | RR42_RS09025 | | Clp protease ATP-binding protein | 0.34 | RR42_RS12985 | | histidine kinase | — | — |
| Ralstonia solanacearum UW163 | 0.71 | UW163_RS14655 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.35 | UW163_RS12995 | | PAS domain-containing sensor histidine kinase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.71 | RALBFv3_RS01345 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.35 | RALBFv3_RS15535 | | PAS domain-containing sensor histidine kinase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.71 | ABZR87_RS12790 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.33 | ABZR87_RS11065 | | nitrogen regulation protein NR(II) | low | > 80 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.70 | GFF4043 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.34 | GFF5270 | | Nitrogen regulation protein NtrB (EC 2.7.13.3) | low | > 90 |
| Herbaspirillum seropedicae SmR1 | 0.70 | HSERO_RS12910 | | ATP-dependent protease | 0.36 | HSERO_RS15685 | | histidine kinase | — | — |
| Bosea sp. OAE506 | 0.70 | ABIE41_RS18055 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.23 | ABIE41_RS16790 | | ATP-binding protein | — | — |
| Azospirillum sp. SherDot2 | 0.69 | MPMX19_01547 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.25 | MPMX19_01111 | | Sensory histidine kinase/phosphatase NtrB | — | — |
| Rhodopseudomonas palustris CGA009 | 0.69 | TX73_015350 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.23 | TX73_013415 | | nitrogen regulation protein NR(II) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.69 | Ga0059261_0096 | | endopeptidase Clp ATP-binding regulatory subunit (clpX) | 0.16 | Ga0059261_0139 | | Signal transduction histidine kinase, nitrogen specific | — | — |
| Agrobacterium fabrum C58 | 0.69 | Atu1259 | | ATP-dependent Clp protease, ATP-binding subunit | 0.22 | Atu1445 | | two component sensor kinase | — | — |
| Sinorhizobium meliloti 1021 | 0.69 | SMc01904 | | ATP-dependent protease ATP-binding subunit ClpX | 0.21 | SMc01042 | | nitrogen regulation protein | — | — |
| Castellaniella sp019104865 MT123 | 0.69 | ABCV34_RS05130 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.30 | ABCV34_RS03535 | | nitrogen regulation protein NR(II) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.69 | AMB_RS14040 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.25 | AMB_RS11945 | | PAS domain-containing sensor histidine kinase | — | — |
| Azospirillum brasilense Sp245 | 0.69 | AZOBR_RS07140 | | ATP-dependent protease | 0.24 | AZOBR_RS14425 | | ATPase | — | — |
| Rhizobium sp. OAE497 | 0.69 | ABIE40_RS07095 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.22 | ABIE40_RS09085 | | nitrogen regulation protein NR(II) | — | — |
| Rhodospirillum rubrum S1H | 0.67 | Rru_A1551 | | ClpX, ATPase regulatory subunit (NCBI) | 0.24 | Rru_A1677 | | Signal transduction histidine kinase, nitrogen specific, NtrB (NCBI) | — | — |
| Acinetobacter radioresistens SK82 | 0.66 | MPMX26_00409 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.37 | MPMX26_01293 | | Sensory histidine kinase/phosphatase NtrB | low | > 36 |
| Dinoroseobacter shibae DFL-12 | 0.66 | Dshi_1387 | | ATP-dependent Clp protease, ATP-binding subunit ClpX (RefSeq) | 0.21 | Dshi_1575 | | signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq) | low | > 64 |
Not shown: 20 genomes with orthologs for BWI76_RS06530 only; 0 genomes with orthologs for BWI76_RS00390 only