| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Burkholderia phytofirmans PsJN | 1.0 | BPHYT_RS33915 | | isopropylmalate isomerase | 1.0 | BPHYT_RS14895 | | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.91 | 14 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.97 | H281DRAFT_06075 | | 3-isopropylmalate dehydratase, large subunit | 0.95 | H281DRAFT_03922 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Paraburkholderia graminis OAS925 | 0.96 | ABIE53_004801 | | 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit | 0.91 | ABIE53_003154 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.95 | QEN71_RS17605 | | 3-isopropylmalate dehydratase large subunit | 0.90 | QEN71_RS04085 | | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.75 | 41 |
| Ralstonia solanacearum PSI07 | 0.87 | RPSI07_RS14695 | | 3-isopropylmalate dehydratase large subunit | 0.69 | RPSI07_RS19695 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.87 | ABZR87_RS14540 | | 3-isopropylmalate dehydratase large subunit | 0.70 | ABZR87_RS09465 | | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.91 | 5 |
| Ralstonia solanacearum UW163 | 0.87 | UW163_RS11105 | | 3-isopropylmalate dehydratase large subunit | 0.69 | UW163_RS16035 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.87 | RALBFv3_RS02620 | | 3-isopropylmalate dehydratase large subunit | 0.69 | RALBFv3_RS13775 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.87 | RS_RS10000 | | 3-isopropylmalate dehydratase large subunit | 0.69 | RS_RS04510 | | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.56 | 1 |
| Cupriavidus basilensis FW507-4G11 | 0.86 | RR42_RS14400 | | isopropylmalate isomerase | 0.67 | RR42_RS04475 | | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.83 | 10 |
| Herbaspirillum seropedicae SmR1 | 0.80 | HSERO_RS16515 | | isopropylmalate isomerase | 0.62 | HSERO_RS18420 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Kangiella aquimarina DSM 16071 | 0.73 | B158DRAFT_1319 | | 3-isopropylmalate dehydratase, large subunit | 0.21 | B158DRAFT_2432 | | 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) | low | > 40 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.72 | Xcc-8004.1049.1 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | 0.15 | Xcc-8004.3281.1 | | 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) | 0.83 | 23 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.72 | Psyr_1983 | | 3-isopropylmalate dehydratase, large subunit | 0.25 | Psyr_0888 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.72 | Psyr_1983 | | 3-isopropylmalate dehydratase, large subunit | 0.25 | Psyr_0888 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Pseudomonas simiae WCS417 | 0.72 | PS417_18600 | | isopropylmalate isomerase | 0.21 | PS417_12855 | | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.80 | 26 |
| Pseudomonas fluorescens SBW25-INTG | 0.71 | PFLU_RS20580 | | 3-isopropylmalate dehydratase large subunit | 0.21 | PFLU_RS13540 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.71 | PFLU_RS20580 | | 3-isopropylmalate dehydratase large subunit | 0.21 | PFLU_RS13540 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 109 |
| Rhodospirillum rubrum S1H | 0.69 | Rru_A1189 | | 3-isopropylmalate dehydratase large subunit region (NCBI) | 0.12 | Rru_A0295 | | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | — | — |
| Azospirillum sp. SherDot2 | 0.68 | MPMX19_01998 | | 3-isopropylmalate dehydratase large subunit | 0.13 | MPMX19_02233 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Azospirillum brasilense Sp245 | 0.68 | AZOBR_RS03545 | | isopropylmalate isomerase | 0.14 | AZOBR_RS03090 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Sinorhizobium meliloti 1021 | 0.66 | SMc03823 | | isopropylmalate isomerase large subunit | 0.17 | SMc00333 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Bosea sp. OAE506 | 0.66 | ABIE41_RS11660 | | 3-isopropylmalate dehydratase large subunit | 0.14 | ABIE41_RS03910 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Rhizobium sp. OAE497 | 0.65 | ABIE40_RS18380 | | 3-isopropylmalate dehydratase large subunit | 0.24 | ABIE40_RS05420 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Agrobacterium fabrum C58 | 0.65 | Atu2709 | | 3-isopropylmalate dehydratase, large subunit | 0.22 | Atu0642 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.64 | TX73_001245 | | 3-isopropylmalate dehydratase large subunit | 0.14 | TX73_000320 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Magnetospirillum magneticum AMB-1 | 0.64 | AMB_RS20560 | | 3-isopropylmalate dehydratase large subunit | 0.15 | AMB_RS21555 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Pantoea sp. MT58 | 0.62 | IAI47_16010 | | 3-isopropylmalate dehydratase large subunit | 0.54 | IAI47_12860 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Escherichia fergusonii Becca | 0.62 | EFB2_03973 | | 3-isopropylmalate dehydratase large subunit | 0.55 | EFB2_03156 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 86 |
| Enterobacter asburiae PDN3 | 0.62 | EX28DRAFT_3668 | | 3-isopropylmalate dehydratase, large subunit | 0.54 | EX28DRAFT_2027 | | 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) | 0.61 | 63 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.62 | GFF166 | | 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) | 0.55 | GFF3665 | | 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) | low | > 78 |
| Escherichia coli ECRC62 | 0.62 | BNILDI_08540 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.54 | BNILDI_20300 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.98 | 27 |
| Escherichia coli ECOR38 | 0.62 | HEPCGN_08705 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.54 | HEPCGN_23035 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.96 | 41 |
| Escherichia coli Nissle 1917 | 0.62 | ECOLIN_RS00390 | | 3-isopropylmalate dehydratase large subunit | 0.55 | ECOLIN_RS04810 | | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.81 | 32 |
| Escherichia coli BL21 | 0.62 | ECD_00074 | | 3-isopropylmalate dehydratase large subunit | 0.54 | ECD_00912 | | 5-enolpyruvylshikimate-3-phosphate synthetase | 0.80 | 45 |
| Escherichia coli BW25113 | 0.62 | b0072 | leuC | isopropylmalate isomerase large subunit (NCBI) | 0.54 | b0908 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) | 0.91 | 41 |
| Escherichia coli ECOR27 | 0.62 | NOLOHH_03070 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.54 | NOLOHH_22045 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.89 | 56 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.62 | OHPLBJKB_03585 | | 3-isopropylmalate dehydratase large subunit | 0.54 | OHPLBJKB_02760 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 73 |
| Rahnella sp. WP5 | 0.62 | EX31_RS03690 | | 3-isopropylmalate dehydratase large subunit | 0.56 | EX31_RS18250 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.62 | CCNA_00196 | | 3-isopropylmalate dehydratase large subunit | 0.15 | CCNA_03704 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.62 | CCNA_00196 | | 3-isopropylmalate dehydratase large subunit | 0.15 | CCNA_03704 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Dickeya dianthicola 67-19 | 0.62 | HGI48_RS18065 | | 3-isopropylmalate dehydratase large subunit | 0.54 | HGI48_RS09685 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Dickeya dianthicola ME23 | 0.62 | DZA65_RS19210 | | 3-isopropylmalate dehydratase large subunit | 0.54 | DZA65_RS09995 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Escherichia coli ECRC98 | 0.61 | JDDGAC_14320 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.54 | JDDGAC_09095 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.93 | 23 |
| Escherichia coli ECRC99 | 0.61 | KEDOAH_17430 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.54 | KEDOAH_22250 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Escherichia coli ECRC102 | 0.61 | NIAGMN_08575 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.54 | NIAGMN_03205 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Escherichia coli ECRC100 | 0.61 | OKFHMN_10725 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.54 | OKFHMN_05485 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.97 | 29 |
| Escherichia coli ECRC101 | 0.61 | MCAODC_01240 | leuC1 | 3-isopropylmalate dehydratase large subunit 1 | 0.54 | MCAODC_24875 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.88 | 43 |
| Klebsiella michiganensis M5al | 0.61 | BWI76_RS04670 | | 3-isopropylmalate dehydratase large subunit | 0.54 | BWI76_RS09760 | | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.80 | 51 |
| Enterobacter sp. TBS_079 | 0.61 | MPMX20_00767 | | 3-isopropylmalate dehydratase large subunit 1 | 0.55 | MPMX20_01567 | | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.85 | 41 |
| Dickeya dadantii 3937 | 0.61 | DDA3937_RS18125 | | 3-isopropylmalate dehydratase large subunit | 0.55 | DDA3937_RS09675 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Pectobacterium carotovorum WPP14 | 0.61 | HER17_RS03075 | | 3-isopropylmalate dehydratase large subunit | 0.52 | HER17_RS12285 | | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.94 | 41 |
| Rhodanobacter denitrificans FW104-10B01 | 0.60 | LRK54_RS07375 | | 3-isopropylmalate dehydratase large subunit | 0.16 | LRK54_RS00390 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Rhodanobacter denitrificans MT42 | 0.60 | LRK55_RS07105 | | 3-isopropylmalate dehydratase large subunit | 0.17 | LRK55_RS00130 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 63 |
| Vibrio cholerae E7946 ATCC 55056 | 0.59 | CSW01_12605 | | 3-isopropylmalate dehydratase large subunit | 0.58 | CSW01_08705 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 62 |
| Serratia liquefaciens MT49 | 0.59 | IAI46_03345 | | 3-isopropylmalate dehydratase large subunit | 0.54 | IAI46_08640 | | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.70 | 30 |
| Phaeobacter inhibens DSM 17395 | 0.59 | PGA1_c29780 | | 3-isopropylmalate dehydratase large subunit | 0.13 | PGA1_c04810 | | 3-phosphoshikimate 1-carboxyvinyltransferase AroA | — | — |
| Shewanella oneidensis MR-1 | 0.59 | SO4234 | leuC | 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) | 0.56 | SO2404 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) | 0.88 | 66 |
| Shewanella loihica PV-4 | 0.59 | Shew_3470 | | isopropylmalate isomerase large subunit (RefSeq) | 0.56 | Shew_1952 | | 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_3759 | | isopropylmalate isomerase large subunit (RefSeq) | 0.56 | Shewana3_1975 | | 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) | 0.92 | 33 |
| Erwinia tracheiphila SCR3 | 0.58 | LU632_RS02870 | leuC | 3-isopropylmalate dehydratase large subunit | 0.51 | LU632_RS09795 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.77 | 33 |
| Shewanella amazonensis SB2B | 0.58 | Sama_0337 | | isopropylmalate isomerase large subunit (RefSeq) | 0.56 | Sama_1734 | | 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.58 | Dshi_0085 | | 3-isopropylmalate dehydratase, large subunit (RefSeq) | 0.14 | Dshi_1022 | | 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.58 | Ga0059261_4223 | | 3-isopropylmalate dehydratase, large subunit | 0.14 | Ga0059261_0167 | | 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) | — | — |
| Mycobacterium tuberculosis H37Rv | 0.57 | Rv2988c | | Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) | 0.16 | Rv3227 | | 3-phosphoshikimate 1-carboxyvinyltransferase AroA (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) | — | — |
| Alteromonas macleodii MIT1002 | 0.57 | MIT1002_00947 | | 3-isopropylmalate dehydratase large subunit | 0.53 | MIT1002_02191 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Bifidobacterium breve UCC2003 | 0.54 | BBR_RS19630 | | 3-isopropylmalate dehydratase large subunit | 0.17 | BBR_RS14370 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 34 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.52 | ABZR88_RS11595 | | 3-isopropylmalate dehydratase large subunit | 0.25 | ABZR88_RS07000 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.51 | CA264_09435 | | 3-isopropylmalate dehydratase large subunit | 0.21 | CA264_13100 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 74 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.51 | CA265_RS15830 | | 3-isopropylmalate dehydratase large subunit | 0.24 | CA265_RS11640 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.50 | BT1860 | | 3-isopropylmalate dehydratase large subunit (NCBI ptt file) | 0.28 | BT2186 | | 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (from data) | — | — |
| Bacteroides stercoris CC31F | 0.50 | HMPREF1181_RS14145 | | 3-isopropylmalate dehydratase large subunit | 0.26 | HMPREF1181_RS09330 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 56 |
| Phocaeicola dorei CL03T12C01 | 0.50 | ABI39_RS10200 | | 3-isopropylmalate dehydratase large subunit | 0.27 | ABI39_RS09575 | | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.68 | 67 |
| Bacteroides ovatus ATCC 8483 | 0.50 | BACOVA_04603 | | 3-isopropylmalate dehydratase, large subunit | 0.28 | BACOVA_03157 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.49 | HMPREF1058_RS14550 | | 3-isopropylmalate dehydratase large subunit | 0.27 | HMPREF1058_RS13970 | | 3-phosphoshikimate 1-carboxyvinyltransferase | low | > 67 |
| Parabacteroides merdae CL09T00C40 | 0.49 | HMPREF1078_RS16660 | | 3-isopropylmalate dehydratase large subunit | 0.26 | HMPREF1078_RS05635 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.49 | Echvi_2059 | | 3-isopropylmalate dehydratase, large subunit | 0.25 | Echvi_0122 | | 5-enolpyruvylshikimate-3-phosphate synthase | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.49 | ABZR86_RS15960 | | 3-isopropylmalate dehydratase large subunit | 0.18 | ABZR86_RS02230 | | 3-phosphoshikimate 1-carboxyvinyltransferase | 0.89 | 66 |
| Lysobacter sp. OAE881 | 0.48 | ABIE51_RS17575 | | 3-isopropylmalate dehydratase large subunit | 0.18 | ABIE51_RS12135 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Synechococcus elongatus PCC 7942 | 0.47 | Synpcc7942_1898 | leuC | isopropylmalate isomerase large subunit | 0.15 | Synpcc7942_0232 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.47 | OKGIIK_13585 | leuC | 3-isopropylmalate dehydratase large subunit | 0.17 | OKGIIK_06920 | aroA | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.46 | A4249_RS10005 | | 3-isopropylmalate dehydratase large subunit | 0.16 | A4249_RS10920 | | 3-phosphoshikimate 1-carboxyvinyltransferase | — | — |
Not shown: 17 genomes with orthologs for BPHYT_RS33915 only; 5 genomes with orthologs for BPHYT_RS14895 only