Conservation of cofitness between BPHYT_RS01650 and BPHYT_RS14845 in Burkholderia phytofirmans PsJN

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS01650 23S rRNA methyltransferase 1.0 BPHYT_RS14845 cysteine synthase 0.33 13
Paraburkholderia bryophila 376MFSha3.1 0.94 H281DRAFT_02203 SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase 0.99 H281DRAFT_03911 cysteine synthase — —
Paraburkholderia graminis OAS925 0.94 ABIE53_000425 23S rRNA (cytosine1962-C5)-methyltransferase 0.94 ABIE53_003144 cysteine synthase B low > 113
Paraburkholderia sabiae LMG 24235 0.92 QEN71_RS00350 class I SAM-dependent rRNA methyltransferase 0.94 QEN71_RS04135 cysteine synthase CysM — —
Ralstonia sp. UNC404CL21Col 0.76 ABZR87_RS05070 class I SAM-dependent rRNA methyltransferase 0.82 ABZR87_RS09515 cysteine synthase CysM low > 80
Ralstonia solanacearum PSI07 0.76 RPSI07_RS23695 class I SAM-dependent rRNA methyltransferase 0.82 RPSI07_RS19645 cysteine synthase CysM — —
Ralstonia solanacearum IBSBF1503 0.76 RALBFv3_RS09670 class I SAM-dependent rRNA methyltransferase 0.82 RALBFv3_RS13825 cysteine synthase CysM — —
Ralstonia solanacearum UW163 0.76 UW163_RS03910 class I SAM-dependent rRNA methyltransferase 0.82 UW163_RS15985 cysteine synthase CysM — —
Ralstonia solanacearum GMI1000 0.75 RS_RS00255 class I SAM-dependent rRNA methyltransferase 0.83 RS_RS04560 cysteine synthase CysM — —
Cupriavidus basilensis FW507-4G11 0.71 RR42_RS01670 23S rRNA methyltransferase 0.81 RR42_RS04535 cysteine synthase low > 128
Dechlorosoma suillum PS 0.56 Dsui_0653 putative SAM-dependent methyltransferase 0.79 Dsui_1954 cysteine synthase B — —
Shewanella amazonensis SB2B 0.49 Sama_2965 putative SAM-dependent methyltransferase (RefSeq) 0.30 Sama_1508 cysteine synthase A (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_06820 ribosomal RNA large subunit methyltransferase I 0.64 CSW01_02845 cysteine synthase CysM low > 62
Shewanella oneidensis MR-1 0.49 SO1149 hypothetical SAM-dependent methyltransferase (NCBI ptt file) 0.59 SO3598 cysM cysteine synthase B (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.48 Shewana3_0977 SAM-dependent methyltransferase (RefSeq) 0.59 Shewana3_3188 cysM cysteine synthase B (RefSeq) low > 73
Variovorax sp. SCN45 0.47 GFF4489 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) 0.75 GFF6025 Cysteine synthase B (EC 2.5.1.47) — —
Alteromonas macleodii MIT1002 0.47 MIT1002_01688 Ribosomal RNA large subunit methyltransferase I 0.31 MIT1002_02237 Cysteine synthase A — —
Klebsiella michiganensis M5al 0.47 BWI76_RS10045 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.61 BWI76_RS20685 cysteine synthase B — —
Escherichia coli ECRC100 0.46 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.59 OKFHMN_22170 cysM cysteine synthase B low > 80
Escherichia coli ECRC99 0.46 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.59 KEDOAH_06050 cysM cysteine synthase B — —
Escherichia coli ECRC62 0.46 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.60 BNILDI_12715 cysM cysteine synthase B low > 75
Escherichia coli ECRC101 0.46 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.59 MCAODC_12700 cysM cysteine synthase B low > 87
Escherichia coli ECRC102 0.46 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.59 NIAGMN_19940 cysM cysteine synthase B — —
Escherichia coli ECRC98 0.46 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.59 JDDGAC_26120 cysM cysteine synthase B low > 86
Enterobacter asburiae PDN3 0.46 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases 0.60 EX28DRAFT_0209 cysteine synthase B — —
Escherichia coli BW25113 0.46 b0967 yccW predicted methyltransferase (RefSeq) 0.60 b2421 cysM cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) low > 76
Escherichia coli BL21 0.46 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent 0.60 ECD_02321 cysteine synthase B (O-acetylserine sulfhydrolase B) low > 61
Enterobacter sp. TBS_079 0.46 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I 0.60 MPMX20_03313 Cysteine synthase B — —
Escherichia coli Nissle 1917 0.46 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.60 ECOLIN_RS13900 cysteine synthase B — —
Escherichia coli ECOR27 0.46 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.60 NOLOHH_13850 cysM cysteine synthase B low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I 0.60 OHPLBJKB_01302 Cysteine synthase B low > 73
Escherichia fergusonii Becca 0.46 EFB2_03104 Ribosomal RNA large subunit methyltransferase I 0.60 EFB2_01456 Cysteine synthase B low > 86
Escherichia coli ECOR38 0.46 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.60 HEPCGN_21345 cysM cysteine synthase B low > 87
Erwinia tracheiphila SCR3 0.46 LU632_RS10090 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.55 LU632_RS06675 cysM cysteine synthase CysM low > 74
Pantoea sp. MT58 0.46 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.54 IAI47_05405 cysteine synthase CysM low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF3258 LSU m5C1962 methyltransferase RlmI 0.61 GFF2055 Cysteine synthase (EC 2.5.1.47) low > 78
Variovorax sp. OAS795 0.45 ABID97_RS06155 class I SAM-dependent methyltransferase 0.74 ABID97_RS07880 cysteine synthase CysM — —
Acidovorax sp. GW101-3H11 0.45 Ac3H11_2000 LSU m5C1962 methyltransferase RlmI 0.73 Ac3H11_644 Cysteine synthase B (EC 2.5.1.47) — —
Pedobacter sp. GW460-11-11-14-LB5 0.44 CA265_RS19815 RlmI/RlmK family 23S rRNA methyltransferase 0.55 CA265_RS10150 cysteine synthase B low > 88
Rahnella sp. WP5 0.44 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.60 EX31_RS20205 cysteine synthase CysM low > 89
Serratia liquefaciens MT49 0.44 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI 0.55 IAI46_18490 cysteine synthase CysM low > 86
Mucilaginibacter yixingensis YX-36 DSM 26809 0.42 ABZR88_RS22040 class I SAM-dependent rRNA methyltransferase 0.54 ABZR88_RS13695 cysteine synthase CysM — —
Bacteroides ovatus ATCC 8483 0.35 BACOVA_05134 hypothetical protein 0.37 BACOVA_04596 cysteine synthase A low > 94
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS18215 class I SAM-dependent rRNA methyltransferase 0.36 ABI39_RS02185 cysteine synthase A low > 72
Parabacteroides merdae CL09T00C40 0.34 HMPREF1078_RS13685 class I SAM-dependent rRNA methyltransferase 0.38 HMPREF1078_RS08075 cysteine synthase A — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.33 CA264_05605 RlmI/RlmK family 23S rRNA methyltransferase 0.57 CA264_08940 cysteine synthase B 0.36 58
Bacteroides thetaiotaomicron VPI-5482 0.33 BT4331 conserved hypothetical protein (NCBI ptt file) 0.40 BT1852 cysteine synthase A (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS05925 class I SAM-dependent rRNA methyltransferase 0.36 HMPREF1181_RS14120 cysteine synthase A low > 56
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS05890 class I SAM-dependent rRNA methyltransferase 0.36 HMPREF1058_RS02875 cysteine synthase A low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_3350 Predicted SAM-dependent methyltransferases 0.56 Echvi_0220 cysteine synthase B — —
Desulfovibrio vulgaris Miyazaki F 0.30 DvMF_1714 protein of unknown function Met10 (RefSeq) 0.34 DvMF_2658 cysteine synthase (RefSeq) — —
Fusobacterium nucleatum SB010 0.29 HUW76_04950 class I SAM-dependent rRNA methyltransferase 0.27 HUW76_04155 cysteine synthase A — —
Azospirillum brasilense Sp245 0.28 AZOBR_RS01190 SAM-dependent methyltransferase 0.31 AZOBR_RS01080 cysteine synthase — —
Xanthomonas campestris pv. campestris strain 8004 0.27 Xcc-8004.5393.1 LSU m5C1962 methyltransferase RlmI 0.36 Xcc-8004.1247.1 Cysteine synthase (EC 2.5.1.47) low > 74
Pseudomonas sp. RS175 0.26 PFR28_04274 Ribosomal RNA large subunit methyltransferase I 0.67 PFR28_03225 Cysteine synthase B — —
Azospirillum sp. SherDot2 0.26 MPMX19_00203 Ribosomal RNA large subunit methyltransferase I 0.30 MPMX19_00237 Cysteine synthase low > 112
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_977 LSU m5C1962 methyltransferase RlmI 0.67 PfGW456L13_2032 Cysteine synthase B (EC 2.5.1.47) low > 87
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_13260 SAM-dependent methyltransferase 0.67 AO356_19050 cysteine synthase low > 104
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_4566 LSU m5C1962 methyltransferase RlmI 0.67 Pf6N2E2_5721 Cysteine synthase B (EC 2.5.1.47) — —
Magnetospirillum magneticum AMB-1 0.26 AMB_RS22065 class I SAM-dependent rRNA methyltransferase 0.32 AMB_RS01005 cysteine synthase A — —
Pseudomonas putida KT2440 0.26 PP_5127 ribosomal RNA large subunit methyltransferase I 0.68 PP_1654 cysteine synthase B low > 96
Lysobacter sp. OAE881 0.26 ABIE51_RS00980 class I SAM-dependent rRNA methyltransferase 0.35 ABIE51_RS16995 cysteine synthase A low > 62
Pseudomonas simiae WCS417 0.26 PS417_26880 SAM-dependent methyltransferase 0.68 PS417_20160 cysteine synthase low > 88
Pseudomonas sp. S08-1 0.25 OH686_14110 23S rRNA (cytosine(1962)-C(5))-methyltransferase 0.67 OH686_18950 cysteine synthase B — —
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_2307 LSU m5C1962 methyltransferase RlmI 0.67 Pf1N1B4_3506 Cysteine synthase B (EC 2.5.1.47) low > 87
Phaeobacter inhibens DSM 17395 0.25 PGA1_c19990 ribosomal RNA large subunit methyltransferase I 0.25 PGA1_c13950 cysteine synthase CysK — —
Pseudomonas stutzeri RCH2 0.25 Psest_0236 Predicted SAM-dependent methyltransferases 0.67 Psest_1638 cysteine synthase B — —
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_08330 SAM-dependent methyltransferase 0.68 AO353_02720 cysteine synthase low > 101
Pseudomonas fluorescens SBW25 0.25 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.67 PFLU_RS22105 cysteine synthase CysM low > 109
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS06920 class I SAM-dependent rRNA methyltransferase 0.35 LRK54_RS00905 cysteine synthase A low > 59
Pseudomonas syringae pv. syringae B728a 0.25 Psyr_4764 SAM-dependent methyltransferase 0.66 Psyr_3697 cysteine synthase — —
Rhodanobacter denitrificans MT42 0.25 LRK55_RS06665 class I SAM-dependent rRNA methyltransferase 0.35 LRK55_RS00680 cysteine synthase A low > 63
Pseudomonas syringae pv. syringae B728a ΔmexB 0.25 Psyr_4764 SAM-dependent methyltransferase 0.66 Psyr_3697 cysteine synthase — —
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase 0.67 PFLU_RS22105 cysteine synthase CysM low > 109
Marinobacter adhaerens HP15 0.24 HP15_460 SAM-dependent methyltransferase 0.69 HP15_789 cysteine synthase B — —
Desulfovibrio vulgaris Hildenborough JW710 0.24 DVU0495 conserved hypothetical protein (TIGR) 0.39 DVU0663 cysK cysteine synthase A (TIGR) — —
Rhodospirillum rubrum S1H 0.23 Rru_A3333 hypothetical protein (NCBI) 0.34 Rru_A3794 Cysteine synthase (NCBI) — —
Dinoroseobacter shibae DFL-12 0.23 Dshi_1771 hypothetical protein (RefSeq) 0.25 Dshi_0891 cysteine synthase A (RefSeq) low > 64

Not shown: 4 genomes with orthologs for BPHYT_RS01650 only; 21 genomes with orthologs for BPHYT_RS14845 only