| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Kangiella aquimarina DSM 16071 | 1.0 | B158DRAFT_2215 | | Na+/H+-dicarboxylate symporters | 1.0 | B158DRAFT_0164 | | tRNA-U20-dihydrouridine synthase | 0.57 | 18 |
| Alteromonas macleodii MIT1002 | 0.48 | MIT1002_01702 | | Glutamate-aspartate carrier protein | 0.68 | MIT1002_03957 | | putative tRNA-dihydrouridine synthase | low | > 70 |
| Shewanella amazonensis SB2B | 0.45 | Sama_1319 | | symporter for L-glutamate, L-glutamine, and L-aspartate (from data) | 0.64 | Sama_3225 | | tRNA-dihydrouridine synthase B (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.45 | Shew_2227 | | sodium:dicarboxylate symporter (RefSeq) | 0.60 | Shew_0330 | | nifR3 family TIM-barrel protein (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.45 | Shewana3_1726 | | sodium:dicarboxylate symporter (RefSeq) | 0.62 | Shewana3_0399 | | nifR3 family TIM-barrel protein (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.44 | SO1948 | | sodium:dicarboxylate symporter family protein (NCBI ptt file) | 0.63 | SO0394 | | conserved hypothetical protein (NCBI ptt file) | low | > 76 |
| Pseudomonas stutzeri RCH2 | 0.38 | Psest_4075 | | symporter for L-glutamate, L-glutamine, and L-proline (from data) | 0.64 | Psest_1016 | | putative TIM-barrel protein, nifR3 family | low | > 67 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.35 | CA264_00335 | | dicarboxylate/amino acid:cation symporter | 0.33 | CA264_17860 | | tRNA dihydrouridine synthase DusB | low | > 74 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.31 | Echvi_1519 | | Na+/H+-dicarboxylate symporters | 0.33 | Echvi_1531 | | putative TIM-barrel protein, nifR3 family | low | > 79 |
| Sphingomonas koreensis DSMZ 15582 | 0.29 | Ga0059261_3350 | | Na+/H+-dicarboxylate symporters | 0.41 | Ga0059261_0140 | | tRNA-U20-dihydrouridine synthase | low | > 68 |
| Vibrio cholerae E7946 ATCC 55056 | 0.27 | CSW01_05920 | | dicarboxylate/amino acid:cation symporter | 0.63 | CSW01_01495 | | tRNA dihydrouridine synthase DusB | low | > 62 |
| Acinetobacter radioresistens SK82 | 0.27 | MPMX26_02728 | | Proton/glutamate-aspartate symporter | 0.56 | MPMX26_02127 | | tRNA-dihydrouridine synthase B | low | > 36 |
| Dyella japonica UNC79MFTsu3.2 | 0.27 | ABZR86_RS00450 | | dicarboxylate/amino acid:cation symporter | 0.57 | ABZR86_RS11525 | | tRNA dihydrouridine synthase DusB | low | > 74 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.27 | A4249_RS05595 | | dicarboxylate/amino acid:cation symporter | 0.33 | A4249_RS04810 | | tRNA dihydrouridine synthase DusB | low | > 48 |
| Lysobacter sp. OAE881 | 0.27 | ABIE51_RS06350 | | dicarboxylate/amino acid:cation symporter | 0.57 | ABIE51_RS16450 | | tRNA dihydrouridine synthase DusB | low | > 62 |
| Pectobacterium carotovorum WPP14 | 0.26 | HER17_RS14145 | | glutamate/aspartate:proton symporter GltP | 0.63 | HER17_RS20235 | | tRNA dihydrouridine synthase DusB | low | > 75 |
| Serratia liquefaciens MT49 | 0.26 | IAI46_01410 | | glutamate/aspartate:proton symporter GltP | 0.64 | IAI46_22775 | | tRNA dihydrouridine synthase DusB | low | > 86 |
| Pantoea sp. MT58 | 0.26 | IAI47_17710 | | glutamate/aspartate:proton symporter GltP | 0.62 | IAI47_02385 | | tRNA dihydrouridine synthase DusB | low | > 76 |
| Dickeya dianthicola 67-19 | 0.26 | HGI48_RS07365 | | glutamate/aspartate:proton symporter GltP | 0.63 | HGI48_RS01295 | | tRNA dihydrouridine synthase DusB | low | > 71 |
| Dickeya dianthicola ME23 | 0.25 | DZA65_RS07875 | | glutamate/aspartate:proton symporter GltP | 0.63 | DZA65_RS01355 | | tRNA dihydrouridine synthase DusB | low | > 75 |
| Dickeya dadantii 3937 | 0.25 | DDA3937_RS07490 | | glutamate/aspartate:proton symporter GltP | 0.63 | DDA3937_RS01375 | | tRNA dihydrouridine synthase DusB | low | > 74 |
| Escherichia coli ECOR27 | 0.25 | NOLOHH_05035 | gltP | glutamate/aspartate:proton symporter GltP | 0.64 | NOLOHH_09470 | dusB | tRNA dihydrouridine synthase DusB | low | > 75 |
| Escherichia coli ECRC102 | 0.25 | NIAGMN_10630 | gltP | glutamate/aspartate:proton symporter GltP | 0.64 | NIAGMN_15445 | dusB | tRNA dihydrouridine synthase DusB | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.25 | OHPLBJKB_03963 | | Proton/glutamate-aspartate symporter | 0.55 | OHPLBJKB_00445 | | putative tRNA-dihydrouridine synthase | 0.55 | 62 |
| Escherichia coli ECRC100 | 0.25 | OKFHMN_12785 | gltP | glutamate/aspartate:proton symporter GltP | 0.64 | OKFHMN_17685 | dusB | tRNA dihydrouridine synthase DusB | low | > 80 |
| Escherichia coli BL21 | 0.25 | ECD_03949 | | glutamate/aspartate:proton symporter | 0.64 | ECD_03118 | | tRNA-dihydrouridine synthase B | low | > 61 |
| Escherichia coli ECRC101 | 0.25 | MCAODC_03295 | gltP | glutamate/aspartate:proton symporter GltP | 0.64 | MCAODC_08205 | dusB | tRNA dihydrouridine synthase DusB | low | > 87 |
| Escherichia coli ECOR38 | 0.25 | HEPCGN_11410 | gltP | glutamate/aspartate:proton symporter GltP | 0.64 | HEPCGN_16505 | dusB | tRNA dihydrouridine synthase DusB | low | > 87 |
| Escherichia coli ECRC98 | 0.25 | JDDGAC_16420 | gltP | glutamate/aspartate:proton symporter GltP | 0.56 | JDDGAC_21310 | dusB | tRNA dihydrouridine synthase DusB | low | > 86 |
| Escherichia coli ECRC62 | 0.25 | BNILDI_06490 | gltP | glutamate/aspartate:proton symporter GltP | 0.64 | BNILDI_02050 | dusB | tRNA dihydrouridine synthase DusB | low | > 75 |
| Escherichia fergusonii Becca | 0.25 | EFB2_04512 | | Proton/glutamate-aspartate symporter | 0.64 | EFB2_00564 | | tRNA-dihydrouridine synthase B | low | > 86 |
| Escherichia coli ECRC99 | 0.25 | KEDOAH_15365 | gltP | glutamate/aspartate:proton symporter GltP | 0.56 | KEDOAH_10465 | dusB | tRNA dihydrouridine synthase DusB | — | — |
| Escherichia coli Nissle 1917 | 0.25 | ECOLIN_RS23590 | | glutamate/aspartate:proton symporter GltP | 0.64 | ECOLIN_RS18725 | | tRNA dihydrouridine synthase DusB | 0.88 | 14 |
| Escherichia coli BW25113 | 0.25 | b4077 | gltP | glutamate/aspartate:proton symporter (NCBI) | 0.64 | b3260 | dusB | tRNA-dihydrouridine synthase B (NCBI) | low | > 76 |
| Enterobacter asburiae PDN3 | 0.25 | EX28DRAFT_4231 | | Na+/H+-dicarboxylate symporters | 0.63 | EX28DRAFT_3313 | | putative TIM-barrel protein, nifR3 family | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.25 | GFF1460 | | Glutamate-aspartate carrier protein | 0.54 | GFF2124 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | low | > 78 |
| Klebsiella michiganensis M5al | 0.24 | BWI76_RS02105 | | glutamate/aspartate:proton symporter GltP | 0.64 | BWI76_RS25565 | | tRNA dihydrouridine synthase DusB | — | — |
| Enterobacter sp. TBS_079 | 0.24 | MPMX20_00292 | | Proton/glutamate-aspartate symporter | 0.64 | MPMX20_04169 | | tRNA-dihydrouridine synthase B | low | > 85 |
| Pseudomonas fluorescens SBW25 | 0.24 | PFLU_RS00460 | | glutamate/aspartate:proton symporter GltP | 0.61 | PFLU_RS03025 | | tRNA dihydrouridine synthase DusB | low | > 109 |
| Pseudomonas simiae WCS417 | 0.24 | PS417_00470 | | glutamate:protein symporter | 0.61 | PS417_02950 | | tRNA-dihydrouridine synthase B | low | > 88 |
| Pseudomonas fluorescens SBW25-INTG | 0.24 | PFLU_RS00460 | | glutamate/aspartate:proton symporter GltP | 0.61 | PFLU_RS03025 | | tRNA dihydrouridine synthase DusB | low | > 109 |
| Pseudomonas putida KT2440 | 0.24 | PP_0137 | | glutamate/aspartate-proton DAACS transporter | 0.63 | PP_4820 | | tRNA-dihydrouridine synthase B | low | > 96 |
| Pseudomonas syringae pv. syringae B728a | 0.24 | Psyr_0174 | | Sodium:dicarboxylate symporter | 0.62 | Psyr_4404 | | tRNA-U20-dihydrouridine synthase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.24 | Psyr_0174 | | Sodium:dicarboxylate symporter | 0.62 | Psyr_4404 | | tRNA-U20-dihydrouridine synthase | low | > 86 |
| Pseudomonas fluorescens GW456-L13 | 0.24 | PfGW456L13_578 | | Glutamate-aspartate carrier protein | 0.62 | PfGW456L13_55 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.23 | AO353_10990 | | glutamate:protein symporter | 0.62 | AO353_13660 | | tRNA-dihydrouridine synthase B | low | > 101 |
| Pseudomonas fluorescens FW300-N2C3 | 0.23 | AO356_11400 | | glutamate:protein symporter | 0.63 | AO356_08215 | | tRNA-dihydrouridine synthase B | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.23 | Pf6N2E2_4148 | | Glutamate-aspartate carrier protein | 0.63 | Pf6N2E2_3517 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | low | > 103 |
| Rhodospirillum rubrum S1H | 0.23 | Rru_A1437 | | Sodium:dicarboxylate symporter (NCBI) | 0.34 | Rru_A1676 | | Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI) | low | > 58 |
| Pseudomonas sp. RS175 | 0.23 | PFR28_04638 | | Proton/glutamate-aspartate symporter | 0.63 | PFR28_05216 | | tRNA-dihydrouridine synthase B | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.23 | Pf1N1B4_1888 | | Glutamate-aspartate carrier protein | 0.63 | Pf1N1B4_1313 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | low | > 87 |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_03595 | | C4-dicarboxylate transport protein 2 | 0.43 | MPMX19_01110 | | tRNA-dihydrouridine synthase B | low | > 112 |
| Azospirillum brasilense Sp245 | 0.22 | AZOBR_RS21140 | | C4-dicarboxylate ABC transporter | 0.43 | AZOBR_RS14420 | | tRNA-dihydrouridine synthase | low | > 97 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.22 | ABZR88_RS07700 | | dicarboxylate/amino acid:cation symporter | 0.33 | ABZR88_RS22340 | | tRNA dihydrouridine synthase DusB | low | > 71 |
| Agrobacterium fabrum C58 | 0.22 | Atu3298 | | C4-dicarboxylate transporter DctA | 0.36 | Atu1444 | | nitrogen regulation protein | 0.23 | 45 |
| Cupriavidus basilensis FW507-4G11 | 0.21 | RR42_RS26130 | | C4-dicarboxylate ABC transporter | 0.56 | RR42_RS02730 | | tRNA-dihydrouridine synthase B | low | > 128 |
| Caulobacter crescentus NA1000 Δfur | 0.21 | CCNA_00264 | | C4-dicarboxylate transport protein | 0.30 | CCNA_01813 | | tRNA-dihydrouridine synthase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.21 | CCNA_00264 | | C4-dicarboxylate transport protein | 0.30 | CCNA_01813 | | tRNA-dihydrouridine synthase | low | > 66 |
| Rhizobium sp. OAE497 | 0.21 | ABIE40_RS26345 | | dicarboxylate/amino acid:cation symporter | 0.35 | ABIE40_RS09080 | | tRNA dihydrouridine synthase DusB | low | > 107 |
| Castellaniella sp019104865 MT123 | 0.21 | ABCV34_RS02715 | | dicarboxylate/amino acid:cation symporter | 0.55 | ABCV34_RS07960 | | tRNA dihydrouridine synthase DusB | low | > 48 |
| Herbaspirillum seropedicae SmR1 | 0.21 | HSERO_RS19090 | | C4-dicarboxylate ABC transporter | 0.56 | HSERO_RS02050 | | tRNA-dihydrouridine synthase B | low | > 78 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.21 | CA265_RS15560 | | glutamate/aspartate:proton symporter GltP | 0.33 | CA265_RS21125 | | tRNA dihydrouridine synthase DusB | low | > 88 |
| Variovorax sp. SCN45 | 0.21 | GFF5354 | | C4-dicarboxylate transport protein | 0.55 | GFF2144 | | tRNA-dihydrouridine synthase DusB | low | > 127 |
| Rahnella sp. WP5 | 0.21 | EX31_RS05445 | | dicarboxylate/amino acid:cation symporter | 0.65 | EX31_RS12180 | | tRNA dihydrouridine synthase DusB | low | > 89 |
| Dechlorosoma suillum PS | 0.21 | Dsui_3158 | | Na+/H+ dicarboxylate symporter | 0.57 | Dsui_1593 | | putative TIM-barrel protein, nifR3 family | low | > 51 |
| Acidovorax sp. GW101-3H11 | 0.20 | Ac3H11_719 | | Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate | 0.51 | Ac3H11_3996 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | low | > 79 |
| Pseudomonas sp. S08-1 | 0.20 | OH686_20585 | | Na+/H+-dicarboxylate symporter | 0.64 | OH686_07610 | | tRNA-dihydrouridine synthase DusB | low | > 80 |
| Sinorhizobium meliloti 1021 | 0.20 | SM_b20611 | | C4-dicarboxylate transporter DctA | 0.35 | SMc01041 | | NIFR3-like protein | low | > 103 |
| Variovorax sp. OAS795 | 0.20 | ABID97_RS23115 | | dicarboxylate/amino acid:cation symporter | 0.56 | ABID97_RS24735 | | tRNA dihydrouridine synthase DusB | low | > 91 |
| Rhodopseudomonas palustris CGA009 | 0.19 | TX73_012660 | | dicarboxylate/amino acid:cation symporter | 0.36 | TX73_013410 | | tRNA dihydrouridine synthase DusB | low | > 86 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.19 | H281DRAFT_02039 | | aerobic C4-dicarboxylate transport protein | 0.58 | H281DRAFT_04249 | | tRNA-U20-dihydrouridine synthase | low | > 103 |
| Ralstonia sp. UNC404CL21Col | 0.19 | ABZR87_RS06625 | | dicarboxylate/amino acid:cation symporter | 0.59 | ABZR87_RS07650 | | tRNA dihydrouridine synthase DusB | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.19 | RS_RS01625 | | C4-dicarboxylate transporter 1 | 0.58 | RS_RS02515 | | tRNA dihydrouridine synthase DusB | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.19 | RALBFv3_RS10785 | | dicarboxylate/amino acid:cation symporter | 0.58 | RALBFv3_RS11695 | | tRNA dihydrouridine synthase DusB | low | > 76 |
| Burkholderia phytofirmans PsJN | 0.19 | BPHYT_RS02510 | | C4-dicarboxylate ABC transporter | 0.56 | BPHYT_RS16585 | | tRNA-dihydrouridine synthase B | low | > 109 |
| Ralstonia solanacearum UW163 | 0.19 | UW163_RS02795 | | dicarboxylate/amino acid:cation symporter | 0.58 | UW163_RS01890 | | tRNA dihydrouridine synthase DusB | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.19 | QEN71_RS26995 | | C4-dicarboxylate transporter DctA | 0.57 | QEN71_RS26770 | | tRNA dihydrouridine synthase DusB | low | > 153 |
| Ralstonia solanacearum PSI07 | 0.19 | RPSI07_RS14855 | | dicarboxylate/amino acid:cation symporter | 0.59 | RPSI07_RS21520 | | tRNA dihydrouridine synthase DusB | low | > 81 |
| Paraburkholderia graminis OAS925 | 0.19 | ABIE53_004012 | | aerobic C4-dicarboxylate transport protein | 0.56 | ABIE53_003489 | | tRNA-dihydrouridine synthase B | low | > 113 |
| Rhodanobacter sp. FW510-T8 | 0.18 | OKGIIK_06560 | gltP | dicarboxylate/amino acid:cation symporter | 0.58 | OKGIIK_11770 | dusB | tRNA dihydrouridine synthase DusB | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.18 | LRK54_RS00700 | | dicarboxylate/amino acid:cation symporter | 0.58 | LRK54_RS12140 | | tRNA dihydrouridine synthase DusB | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.18 | LRK55_RS00475 | | dicarboxylate/amino acid:cation symporter | 0.58 | LRK55_RS11875 | | tRNA dihydrouridine synthase DusB | low | > 63 |
| Bacteroides ovatus ATCC 8483 | 0.09 | BACOVA_00510 | | transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein | 0.33 | BACOVA_02724 | | TIM-barrel protein, nifR3 family | low | > 94 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.08 | BT1223 | | Na+/H+-dicarboxylate symporter (NCBI ptt file) | 0.33 | BT3073 | | putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) | — | — |
Not shown: 2 genomes with orthologs for B158DRAFT_2215 only; 13 genomes with orthologs for B158DRAFT_0164 only