Conservation of cofitness between Atu0085 and Atu2832 in Agrobacterium fabrum C58

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0085 tRNA pseudouridine 55 synthase 1.0 Atu2832 tRNA modification GTPase 0.28 8
Rhizobium sp. OAE497 0.83 ABIE40_RS00345 tRNA pseudouridine(55) synthase TruB 0.52 ABIE40_RS19220 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 107
Sinorhizobium meliloti 1021 0.80 SMc00321 tRNA pseudouridine synthase B 0.51 SMc02797 tRNA modification GTPase TrmE — —
Rhodopseudomonas palustris CGA009 0.53 TX73_002255 tRNA pseudouridine(55) synthase TruB 0.37 TX73_001535 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 86
Bosea sp. OAE506 0.52 ABIE41_RS04565 tRNA pseudouridine(55) synthase TruB 0.33 ABIE41_RS04680 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 77
Dinoroseobacter shibae DFL-12 0.45 Dshi_3042 tRNA pseudouridine synthase B (RefSeq) 0.37 Dshi_3454 tRNA modification GTPase TrmE (RefSeq) — —
Azospirillum sp. SherDot2 0.44 MPMX19_02524 tRNA pseudouridine synthase B 0.38 MPMX19_02568 tRNA modification GTPase MnmE — —
Magnetospirillum magneticum AMB-1 0.44 AMB_RS20810 tRNA pseudouridine(55) synthase TruB 0.37 AMB_RS00005 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Phaeobacter inhibens DSM 17395 0.43 PGA1_c32950 tRNA pseudouridine synthase B 0.32 PGA1_c35110 tRNA modification GTPase MnmE — —
Caulobacter crescentus NA1000 Δfur 0.43 CCNA_00035 tRNA pseudouridine synthase B 0.38 CCNA_03872 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase low > 67
Caulobacter crescentus NA1000 0.43 CCNA_00035 tRNA pseudouridine synthase B 0.38 CCNA_03872 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.42 A4249_RS13345 tRNA pseudouridine(55) synthase TruB 0.34 A4249_RS13700 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 48
Rhodospirillum rubrum S1H 0.40 Rru_A3783 tRNA pseudouridine synthase B (NCBI) 0.33 Rru_A3624 tRNA modification GTPase TrmE (NCBI) — —
Pseudomonas simiae WCS417 0.34 PS417_23960 pseudouridine synthase 0.29 PS417_28540 tRNA modification GTPase MnmE — —
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_4178 tRNA pseudouridine synthase B 0.28 Psyr_5133 tRNA modification GTPase trmE low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_4178 tRNA pseudouridine synthase B 0.28 Psyr_5133 tRNA modification GTPase trmE low > 86
Pseudomonas stutzeri RCH2 0.33 Psest_0983 tRNA pseudouridine 55 synthase 0.30 Psest_4373 tRNA modification GTPase TrmE — —
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.29 PfGW456L13_670 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Pseudomonas sp. S08-1 0.33 OH686_17155 tRNA pseudouridine(55) synthase 0.29 OH686_12655 tRNA modification GTPase TrmE — —
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_05550 pseudouridine synthase 0.29 AO353_10455 tRNA modification GTPase MnmE low > 101
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_07400 pseudouridine synthase 0.28 AO356_11660 tRNA modification GTPase MnmE — —
Pseudomonas putida KT2440 0.33 PP_4710 tRNA pseudouridine 55 synthase 0.27 PP_0005 GTPase — —
Pseudomonas fluorescens SBW25 0.33 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.28 PFLU_RS30195 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 109
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.28 PFLU_RS30195 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.28 Pf1N1B4_1933 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Pseudomonas sp. RS175 0.33 PFR28_00092 tRNA pseudouridine synthase B 0.28 PFR28_04588 tRNA modification GTPase MnmE — —
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.28 Pf6N2E2_4202 GTPase and tRNA-U34 5-formylation enzyme TrmE — —
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_0108 tRNA pseudouridine 55 synthase 0.27 B158DRAFT_0373 tRNA modification GTPase TrmE low > 40
Paraburkholderia graminis OAS925 0.32 ABIE53_001832 tRNA pseudouridine55 synthase 0.27 ABIE53_000332 tRNA modification GTPase — —
Rhodanobacter denitrificans MT42 0.32 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB 0.28 LRK55_RS08270 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 63
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB 0.28 LRK54_RS08505 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 59
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS08080 tRNA pseudouridine synthase B 0.27 BPHYT_RS19830 tRNA modification GTPase TrmE — —
Dechlorosoma suillum PS 0.31 Dsui_2720 tRNA pseudouridine 55 synthase 0.27 Dsui_0837 tRNA modification GTPase TrmE low > 51
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_05106 tRNA pseudouridine synthase B 0.27 H281DRAFT_02320 tRNA modification GTPase trmE — —
Alteromonas macleodii MIT1002 0.31 MIT1002_01773 tRNA pseudouridine synthase B 0.29 MIT1002_04128 tRNA modification GTPase MnmE — —
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB 0.27 OKGIIK_15285 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 52
Paraburkholderia sabiae LMG 24235 0.30 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB 0.26 QEN71_RS29655 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_2142 tRNA pseudouridine(55) synthase 0.31 Ga0059261_2204 tRNA modification GTPase trmE low > 68
Shewanella loihica PV-4 0.29 Shew_2825 tRNA pseudouridine synthase B (RefSeq) 0.29 Shew_3865 trmE tRNA modification GTPase TrmE (RefSeq) — —
Acinetobacter radioresistens SK82 0.29 MPMX26_02778 tRNA pseudouridine synthase B 0.30 MPMX26_03070 tRNA modification GTPase MnmE low > 36
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_03400 tRNA pseudouridine(55) synthase TruB 0.29 CSW01_00015 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 62
Pectobacterium carotovorum WPP14 0.29 HER17_RS18200 tRNA pseudouridine(55) synthase TruB 0.29 HER17_RS21825 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 75
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS12835 tRNA pseudouridine synthase B 0.26 RR42_RS20805 tRNA modification GTPase TrmE — —
Pantoea sp. MT58 0.28 IAI47_17015 tRNA pseudouridine(55) synthase TruB 0.28 IAI47_18830 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 76
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.28 Xcc-8004.5407.1 GTPase and tRNA-U34 5-formylation enzyme TrmE 0.40 22
Escherichia coli ECRC101 0.28 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.29 MCAODC_05495 tRNA modification GTPase MnmE — —
Dickeya dadantii 3937 0.28 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB 0.29 DDA3937_RS21310 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.64 53
Escherichia coli BL21 0.28 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.29 ECD_03590 tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase low > 60
Variovorax sp. OAS795 0.28 ABID97_RS16475 tRNA pseudouridine(55) synthase TruB 0.29 ABID97_RS02655 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_00534 tRNA pseudouridine synthase B 0.29 OHPLBJKB_04346 tRNA modification GTPase MnmE — —
Escherichia coli ECRC98 0.28 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.29 JDDGAC_18605 tRNA modification GTPase MnmE — —
Escherichia coli ECOR38 0.28 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.29 HEPCGN_13680 tRNA modification GTPase MnmE low > 85
Escherichia coli ECRC101 0.28 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB 0.29 OKFHMN_14985 tRNA modification GTPase MnmE — —
Escherichia coli ECRC102 0.28 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB 0.29 NIAGMN_12740 tRNA modification GTPase MnmE — —
Shewanella amazonensis SB2B 0.28 Sama_0963 pseudouridylate synthase (RefSeq) 0.30 Sama_0008 trmE tRNA modification GTPase TrmE (RefSeq) — —
Escherichia coli BW25113 0.28 b3166 truB tRNA pseudouridine synthase B (NCBI) 0.29 b3706 trmE tRNA modification GTPase (NCBI) low > 76
Escherichia coli ECRC99 0.28 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB 0.29 KEDOAH_13165 tRNA modification GTPase MnmE — —
Escherichia coli Nissle 1917 0.28 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB 0.29 ECOLIN_RS21345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 52
Escherichia fergusonii Becca 0.27 EFB2_00657 tRNA pseudouridine synthase B 0.29 EFB2_04925 tRNA modification GTPase MnmE low > 86
Lysobacter sp. OAE881 0.27 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB 0.29 ABIE51_RS00735 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 62
Enterobacter asburiae PDN3 0.27 EX28DRAFT_3217 tRNA pseudouridine(55) synthase 0.29 EX28DRAFT_3993 tRNA modification GTPase TrmE — —
Erwinia tracheiphila SCR3 0.27 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB 0.28 LU632_RS25300 mnmE tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Klebsiella michiganensis M5al 0.27 BWI76_RS25080 tRNA pseudouridine(55) synthase 0.28 BWI76_RS00050 tRNA modification GTPase — —
Escherichia coli ECOR27 0.27 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.29 NOLOHH_07125 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Enterobacter sp. TBS_079 0.27 MPMX20_04071 tRNA pseudouridine synthase B 0.29 MPMX20_04650 tRNA modification GTPase MnmE low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.28 GFF1750 GTPase and tRNA-U34 5-formylation enzyme TrmE low > 78
Escherichia coli ECRC62 0.27 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB 0.29 BNILDI_04405 tRNA modification GTPase MnmE — —
Dickeya dianthicola 67-19 0.27 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB 0.29 HGI48_RS21710 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 0.66 39
Rahnella sp. WP5 0.27 EX31_RS08530 tRNA pseudouridine(55) synthase TruB 0.29 EX31_RS06000 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 89
Serratia liquefaciens MT49 0.27 IAI46_01945 tRNA pseudouridine(55) synthase TruB 0.29 IAI46_25250 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 86
Shewanella sp. ANA-3 0.27 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) 0.31 Shewana3_0005 trmE tRNA modification GTPase TrmE (RefSeq) 0.39 30
Variovorax sp. SCN45 0.27 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.28 GFF3275 tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmE — —
Dickeya dianthicola ME23 0.27 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB 0.29 DZA65_RS22695 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 75
Ralstonia solanacearum PSI07 0.27 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB 0.28 RPSI07_RS23950 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Ralstonia solanacearum UW163 0.27 UW163_RS13150 tRNA pseudouridine(55) synthase TruB 0.28 UW163_RS04170 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB 0.28 ABZR87_RS05350 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 80
Ralstonia solanacearum IBSBF1503 0.27 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB 0.28 RALBFv3_RS09410 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Ralstonia solanacearum GMI1000 0.27 RS_RS06470 tRNA pseudouridine(55) synthase TruB 0.28 RS_RS00020 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE — —
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB 0.29 ABZR86_RS15115 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE low > 74
Acidovorax sp. GW101-3H11 0.26 Ac3H11_2865 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.28 Ac3H11_4264 GTPase and tRNA-U34 5-formylation enzyme TrmE low > 79
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_1222 truB tRNA pseudouridine synthase B 0.20 Synpcc7942_1582 trmE tRNA modification GTPase TrmE — —
Marinobacter adhaerens HP15 0.26 HP15_3065 tRNA pseudouridine synthase B 0.27 HP15_3698 tRNA modification GTPase TrmE — —
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU0505 truB tRNA pseudouridine synthase B (TIGR) 0.20 DVU1079 trmE tRNA modification GTPase TrmE (TIGR) low > 55

Not shown: 0 genomes with orthologs for Atu0085 only; 17 genomes with orthologs for Atu2832 only