Conservation of cofitness between Atu0085 and Atu2831 in Agrobacterium fabrum C58

81 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0085 tRNA pseudouridine 55 synthase 1.0 Atu2831 glucose inhibited division protein A 0.29 4
Sinorhizobium meliloti 1021 0.80 SMc00321 tRNA pseudouridine synthase B 0.71 SMc02798 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA — —
Rhodopseudomonas palustris CGA009 0.53 TX73_002255 tRNA pseudouridine(55) synthase TruB 0.58 TX73_001530 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 86
Bosea sp. OAE506 0.52 ABIE41_RS04565 tRNA pseudouridine(55) synthase TruB 0.58 ABIE41_RS04685 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Dinoroseobacter shibae DFL-12 0.45 Dshi_3042 tRNA pseudouridine synthase B (RefSeq) 0.53 Dshi_3455 glucose inhibited division protein A (RefSeq) — —
Azospirillum sp. SherDot2 0.44 MPMX19_02524 tRNA pseudouridine synthase B 0.56 MPMX19_02569 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG — —
Magnetospirillum magneticum AMB-1 0.44 AMB_RS20810 tRNA pseudouridine(55) synthase TruB 0.57 AMB_RS00010 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 64
Phaeobacter inhibens DSM 17395 0.43 PGA1_c32950 tRNA pseudouridine synthase B 0.54 PGA1_c35100 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG — —
Caulobacter crescentus NA1000 Δfur 0.43 CCNA_00035 tRNA pseudouridine synthase B 0.58 CCNA_03871 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA low > 67
Caulobacter crescentus NA1000 0.43 CCNA_00035 tRNA pseudouridine synthase B 0.58 CCNA_03871 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.42 A4249_RS13345 tRNA pseudouridine(55) synthase TruB 0.55 A4249_RS13705 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 48
Rhodospirillum rubrum S1H 0.40 Rru_A3783 tRNA pseudouridine synthase B (NCBI) 0.53 Rru_A3625 Glucose-inhibited division protein A subfamily (NCBI) — —
Pseudomonas simiae WCS417 0.34 PS417_23960 pseudouridine synthase 0.46 PS417_28520 tRNA uridine 5-carboxymethylaminomethyl modification protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_4178 tRNA pseudouridine synthase B 0.46 Psyr_5132 Glucose-inhibited division protein A subfamily low > 86
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_4178 tRNA pseudouridine synthase B 0.46 Psyr_5132 Glucose-inhibited division protein A subfamily low > 86
Pseudomonas stutzeri RCH2 0.33 Psest_0983 tRNA pseudouridine 55 synthase 0.45 Psest_4365 glucose-inhibited division protein A — —
Pseudomonas sp. S08-1 0.33 OH686_17155 tRNA pseudouridine(55) synthase 0.46 OH686_12660 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_05550 pseudouridine synthase 0.45 AO353_10445 tRNA uridine 5-carboxymethylaminomethyl modification protein low > 101
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.45 PfGW456L13_671 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Pseudomonas putida KT2440 0.33 PP_4710 tRNA pseudouridine 55 synthase 0.46 PP_0004 tRNA uridine 5-carboxymethylaminomethyl modification enzyme — —
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_07400 pseudouridine synthase 0.46 AO356_11665 tRNA uridine 5-carboxymethylaminomethyl modification protein — —
Pseudomonas fluorescens SBW25 0.33 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.46 PFLU_RS30175 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.46 PFLU_RS30175 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.46 Pf6N2E2_4203 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Pseudomonas sp. RS175 0.33 PFR28_00092 tRNA pseudouridine synthase B 0.46 PFR28_04587 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG — —
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.45 Pf1N1B4_1934 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Paraburkholderia graminis OAS925 0.32 ABIE53_001832 tRNA pseudouridine55 synthase 0.45 ABIE53_000264 tRNA uridine 5-carboxymethylaminomethyl modification enzyme — —
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_0108 tRNA pseudouridine 55 synthase 0.47 B158DRAFT_0377 glucose-inhibited division protein A low > 40
Rhodanobacter denitrificans MT42 0.32 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB 0.45 LRK55_RS09830 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 63
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB 0.45 LRK54_RS10190 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.64 31
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS08080 tRNA pseudouridine synthase B 0.45 BPHYT_RS19440 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG — —
Dechlorosoma suillum PS 0.31 Dsui_2720 tRNA pseudouridine 55 synthase 0.45 Dsui_0846 glucose-inhibited division protein A low > 51
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_05106 tRNA pseudouridine synthase B 0.45 H281DRAFT_02385 tRNA uridine 5-carboxymethylaminomethyl modification enzyme — —
Alteromonas macleodii MIT1002 0.31 MIT1002_01773 tRNA pseudouridine synthase B 0.47 MIT1002_04124 Glucose-inhibited division protein A low > 70
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB 0.44 OKGIIK_13725 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 52
Paraburkholderia sabiae LMG 24235 0.30 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB 0.45 QEN71_RS29345 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_2142 tRNA pseudouridine(55) synthase 0.44 Ga0059261_2205 glucose-inhibited division protein A low > 68
Shewanella loihica PV-4 0.29 Shew_2825 tRNA pseudouridine synthase B (RefSeq) 0.46 Shew_3856 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_03400 tRNA pseudouridine(55) synthase TruB 0.45 CSW01_14055 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 62
Acinetobacter radioresistens SK82 0.29 MPMX26_02778 tRNA pseudouridine synthase B 0.45 MPMX26_01147 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG low > 36
Pectobacterium carotovorum WPP14 0.29 HER17_RS18200 tRNA pseudouridine(55) synthase TruB 0.46 HER17_RS21600 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 75
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS12835 tRNA pseudouridine synthase B 0.44 RR42_RS20215 tRNA uridine 5-carboxymethylaminomethyl modification protein — —
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.45 Xcc-8004.488.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 0.43 13
Pantoea sp. MT58 0.28 IAI47_17015 tRNA pseudouridine(55) synthase TruB 0.45 IAI47_00300 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 76
Dickeya dadantii 3937 0.28 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB 0.46 DDA3937_RS21605 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 74
Escherichia coli ECRC101 0.28 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.46 MCAODC_05290 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia coli ECOR38 0.28 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.47 HEPCGN_13500 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 85
Escherichia coli ECRC98 0.28 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.46 JDDGAC_18405 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Shewanella amazonensis SB2B 0.28 Sama_0963 pseudouridylate synthase (RefSeq) 0.45 Sama_3655 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) — —
Escherichia coli ECRC99 0.28 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB 0.46 KEDOAH_13365 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia coli BW25113 0.28 b3166 truB tRNA pseudouridine synthase B (NCBI) 0.47 b3741 gidA glucose-inhibited division protein A (NCBI) low > 76
Variovorax sp. OAS795 0.28 ABID97_RS16475 tRNA pseudouridine(55) synthase TruB 0.45 ABID97_RS02905 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia coli BL21 0.28 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.47 ECD_03625 5-methylaminomethyl-2-thiouridine modification at tRNA U34 low > 60
Escherichia coli ECRC102 0.28 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB 0.46 NIAGMN_12540 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia coli ECRC101 0.28 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB 0.46 OKFHMN_14785 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_00534 tRNA pseudouridine synthase B 0.47 OHPLBJKB_04312 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG — —
Escherichia coli Nissle 1917 0.28 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB 0.47 ECOLIN_RS21515 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 52
Lysobacter sp. OAE881 0.27 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB 0.46 ABIE51_RS01205 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 62
Escherichia fergusonii Becca 0.27 EFB2_00657 tRNA pseudouridine synthase B 0.47 EFB2_04892 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG low > 86
Enterobacter asburiae PDN3 0.27 EX28DRAFT_3217 tRNA pseudouridine(55) synthase 0.46 EX28DRAFT_4017 glucose-inhibited division protein A — —
Klebsiella michiganensis M5al 0.27 BWI76_RS25080 tRNA pseudouridine(55) synthase 0.46 BWI76_RS00230 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Erwinia tracheiphila SCR3 0.27 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB 0.45 LU632_RS24815 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Dickeya dianthicola 67-19 0.27 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB 0.47 HGI48_RS21380 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG 0.72 17
Enterobacter sp. TBS_079 0.27 MPMX20_04071 tRNA pseudouridine synthase B 0.46 MPMX20_04626 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG 0.21 67
Escherichia coli ECOR27 0.27 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.47 NOLOHH_06920 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Escherichia coli ECRC62 0.27 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB 0.47 BNILDI_04605 mnmG tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.46 GFF1716 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA low > 78
Serratia liquefaciens MT49 0.27 IAI46_01945 tRNA pseudouridine(55) synthase TruB 0.46 IAI46_25110 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 86
Rahnella sp. WP5 0.27 EX31_RS08530 tRNA pseudouridine(55) synthase TruB 0.46 EX31_RS06140 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 89
Dickeya dianthicola ME23 0.27 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB 0.46 DZA65_RS22360 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 75
Shewanella sp. ANA-3 0.27 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) 0.45 Shewana3_0002 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA (RefSeq) 0.33 71
Variovorax sp. SCN45 0.27 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.45 GFF3336 tRNA-5-carboxymethylaminomethyl-2-thiouridine(34) synthesis protein MnmG — —
Ralstonia solanacearum PSI07 0.27 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB 0.44 RPSI07_RS08410 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Ralstonia solanacearum UW163 0.27 UW163_RS13150 tRNA pseudouridine(55) synthase TruB 0.45 UW163_RS04745 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB 0.44 ABZR87_RS04125 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 80
Ralstonia solanacearum GMI1000 0.27 RS_RS06470 tRNA pseudouridine(55) synthase TruB 0.44 RS_RS16675 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Ralstonia solanacearum IBSBF1503 0.27 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB 0.45 RALBFv3_RS08865 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG — —
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB 0.45 ABZR86_RS15760 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG low > 74
Acidovorax sp. GW101-3H11 0.26 Ac3H11_2865 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.45 Ac3H11_4956 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA low > 79
Marinobacter adhaerens HP15 0.26 HP15_3065 tRNA pseudouridine synthase B 0.47 HP15_3690 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_1222 truB tRNA pseudouridine synthase B 0.38 Synpcc7942_2423 gidA tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA — —
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU0505 truB tRNA pseudouridine synthase B (TIGR) 0.42 DVU1828 gidA glucose inhibited division protein A (TIGR) low > 55

Not shown: 1 genomes with orthologs for Atu0085 only; 17 genomes with orthologs for Atu2831 only