Conservation of cofitness between Atu1515 and Atu0368 in Agrobacterium fabrum C58

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu1515 hypothetical protein 1.0 Atu0368 tRNA pseudouridine synthase I 0.26 2
Rhizobium sp. OAE497 0.72 ABIE40_RS10895 tRNA dihydrouridine(20/20a) synthase DusA 0.78 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA low > 107
Sinorhizobium meliloti 1021 0.60 SMc04235 tRNA-dihydrouridine synthase A 0.74 SMc01099 tRNA pseudouridine synthase A 0.70 24
Caulobacter crescentus NA1000 0.56 CCNA_01364 NIFR3-like protein 0.51 CCNA_00280 tRNA pseudouridine synthase A 0.64 3
Caulobacter crescentus NA1000 Δfur 0.56 CCNA_01364 NIFR3-like protein 0.51 CCNA_00280 tRNA pseudouridine synthase A low > 67
Shewanella sp. ANA-3 0.54 Shewana3_0718 tRNA-dihydrouridine synthase A (RefSeq) 0.31 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) low > 73
Shewanella amazonensis SB2B 0.53 Sama_3055 tRNA-dihydrouridine synthase A (RefSeq) 0.34 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) low > 62
Shewanella loihica PV-4 0.53 Shew_0536 tRNA-dihydrouridine synthase A (RefSeq) 0.31 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.52 A4249_RS10515 tRNA dihydrouridine(20/20a) synthase DusA 0.46 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA low > 48
Bosea sp. OAE506 0.52 ABIE41_RS21285 tRNA dihydrouridine(20/20a) synthase DusA 0.47 ABIE41_RS00165 tRNA pseudouridine(38-40) synthase TruA low > 77
Azospirillum brasilense Sp245 0.52 AZOBR_RS15935 tRNA-dihydrouridine synthase A 0.52 AZOBR_RS03570 tRNA pseudouridine synthase A — —
Synechococcus elongatus PCC 7942 0.52 Synpcc7942_2066 tRNA-dihydrouridine synthase A 0.23 Synpcc7942_2207 truA tRNA pseudouridine synthase A — —
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_01985 tRNA dihydrouridine(20/20a) synthase DusA 0.33 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA low > 62
Phaeobacter inhibens DSM 17395 0.52 PGA1_c19230 tRNA-dihydrouridine synthase A 0.47 PGA1_c05650 tRNA pseudouridine synthase A low > 62
Serratia liquefaciens MT49 0.52 IAI46_22970 tRNA dihydrouridine(20/20a) synthase DusA 0.31 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS18350 tRNA dihydrouridine(20/20a) synthase DusA 0.27 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA low > 74
Azospirillum sp. SherDot2 0.51 MPMX19_00670 tRNA-dihydrouridine(20/20a) synthase 0.53 MPMX19_02005 tRNA pseudouridine synthase A — —
Dinoroseobacter shibae DFL-12 0.51 Dshi_2512 TIM-barrel protein, yjbN family (RefSeq) 0.48 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) low > 64
Pectobacterium carotovorum WPP14 0.51 HER17_RS03680 tRNA dihydrouridine(20/20a) synthase DusA 0.31 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75
Enterobacter sp. TBS_079 0.51 MPMX20_00265 tRNA-dihydrouridine(20/20a) synthase 0.31 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Rhodopseudomonas palustris CGA009 0.51 TX73_010150 tRNA dihydrouridine(20/20a) synthase DusA 0.50 TX73_003225 tRNA pseudouridine(38-40) synthase TruA low > 86
Enterobacter asburiae PDN3 0.51 EX28DRAFT_4263 tRNA dihydrouridine synthase A 0.32 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase low > 76
Dickeya dadantii 3937 0.51 DDA3937_RS17480 tRNA dihydrouridine(20/20a) synthase DusA 0.32 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA low > 74
Rhodanobacter denitrificans FW104-10B01 0.50 LRK54_RS05995 tRNA dihydrouridine(20/20a) synthase DusA 0.26 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA low > 59
Rhodanobacter sp. FW510-T8 0.50 OKGIIK_00625 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.25 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA — —
Rhodanobacter denitrificans MT42 0.50 LRK55_RS05750 tRNA dihydrouridine(20/20a) synthase DusA 0.26 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA low > 63
Klebsiella michiganensis M5al 0.50 BWI76_RS01900 tRNA-dihydrouridine synthase A 0.31 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA low > 92
Escherichia coli BL21 0.50 ECD_03921 tRNA-dihydrouridine synthase A 0.32 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Dickeya dianthicola ME23 0.50 DZA65_RS18620 tRNA dihydrouridine(20/20a) synthase DusA 0.32 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF1418 tRNA dihydrouridine synthase A (EC 1.-.-.-) 0.31 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.50 12
Escherichia coli ECRC98 0.50 JDDGAC_16580 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.32 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECOR38 0.50 HEPCGN_11560 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.32 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase low > 85
Escherichia fergusonii Becca 0.50 EFB2_04556 tRNA-dihydrouridine(20/20a) synthase 0.31 EFB2_01540 tRNA pseudouridine synthase A low > 86
Escherichia coli ECRC99 0.50 KEDOAH_15205 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.32 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC62 0.50 BNILDI_06330 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.32 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECRC101 0.50 OKFHMN_12945 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.32 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase — —
Pantoea sp. MT58 0.50 IAI47_17865 tRNA dihydrouridine(20/20a) synthase DusA 0.28 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA low > 76
Escherichia coli ECOR27 0.50 NOLOHH_05195 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.32 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA low > 57
Rahnella sp. WP5 0.50 EX31_RS11865 tRNA dihydrouridine(20/20a) synthase DusA 0.30 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA low > 89
Escherichia coli ECRC102 0.50 NIAGMN_10790 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.32 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03994 tRNA-dihydrouridine(20/20a) synthase 0.32 OHPLBJKB_01387 tRNA pseudouridine synthase A low > 73
Escherichia coli BW25113 0.50 b4049 dusA tRNA-dihydrouridine synthase A (RefSeq) 0.31 b2318 truA tRNA pseudouridine synthase A (NCBI) low > 76
Dickeya dianthicola 67-19 0.50 HGI48_RS17540 tRNA dihydrouridine(20/20a) synthase DusA 0.32 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Escherichia coli Nissle 1917 0.50 ECOLIN_RS23355 tRNA dihydrouridine(20/20a) synthase DusA 0.32 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA low > 52
Escherichia coli ECRC101 0.49 MCAODC_03455 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.32 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.48 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.31 Psyr_1662 tRNA pseudouridine synthase low > 86
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.5010.1 tRNA dihydrouridine synthase A 0.30 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 74
Pseudomonas syringae pv. syringae B728a 0.48 Psyr_1936 tRNA-U16,U17-dihydrouridine synthase 0.31 Psyr_1662 tRNA pseudouridine synthase low > 86
Kangiella aquimarina DSM 16071 0.48 B158DRAFT_2018 tRNA dihydrouridine synthase A 0.30 B158DRAFT_1483 pseudouridylate synthase I low > 40
Lysobacter sp. OAE881 0.47 ABIE51_RS03925 tRNA dihydrouridine(20/20a) synthase DusA 0.31 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA low > 62
Erwinia tracheiphila SCR3 0.46 LU632_RS23765 dusA tRNA dihydrouridine(20/20a) synthase DusA 0.30 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA — —
Pseudomonas putida KT2440 0.46 PP_2169 tRNA-dihydrouridine synthase A 0.32 PP_1994 tRNA pseudouridine (38-40)synthase 0.22 56
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_2257 tRNA dihydrouridine synthase A 0.31 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.27 87
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS17905 tRNA-dihydrouridine synthase A 0.32 HSERO_RS16485 tRNA pseudouridine synthase A low > 78
Pseudomonas simiae WCS417 0.46 PS417_07740 tRNA-dihydrouridine synthase A 0.30 PS417_18565 pseudouridine synthase — —
Pseudomonas fluorescens SBW25-INTG 0.46 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.30 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25 0.46 PFLU_RS07810 tRNA dihydrouridine(20/20a) synthase DusA 0.30 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_02170 tRNA-dihydrouridine synthase A 0.31 AO356_21435 pseudouridine synthase low > 104
Pseudomonas stutzeri RCH2 0.45 Psest_2706 tRNA dihydrouridine synthase A 0.30 Psest_2585 pseudouridylate synthase I low > 67
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS22650 tRNA dihydrouridine(20/20a) synthase DusA 0.33 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA low > 153
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS08700 tRNA-dihydrouridine synthase A 0.32 BPHYT_RS33885 tRNA pseudouridine synthase A low > 109
Marinobacter adhaerens HP15 0.45 HP15_2240 tRNA-dihydrouridine synthase, TIM-barrel, YjbN 0.33 HP15_1829 tRNA pseudouridine synthase A low > 73
Pseudomonas sp. RS175 0.44 PFR28_01143 tRNA-dihydrouridine(20/20a) synthase 0.31 PFR28_02817 tRNA pseudouridine synthase A low > 88
Pseudomonas sp. S08-1 0.44 OH686_22745 tRNA-dihydrouridine(20/20a) synthase 0.34 OH686_04450 tRNA pseudouridine(38-40) synthase low > 80
Pseudomonas fluorescens FW300-N1B4 0.44 Pf1N1B4_57 tRNA dihydrouridine synthase A 0.31 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.27 3
Rhodospirillum rubrum S1H 0.44 Rru_A1621 Dihydrouridine synthase TIM-barrel protein yjbN (NCBI) 0.50 Rru_A3352 Pseudouridylate synthase (NCBI) — —
Ralstonia solanacearum PSI07 0.44 RPSI07_RS17630 tRNA dihydrouridine(20/20a) synthase DusA 0.34 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA low > 81
Paraburkholderia graminis OAS925 0.44 ABIE53_001975 tRNA-dihydrouridine synthase A 0.32 ABIE53_004807 tRNA pseudouridine38-40 synthase low > 113
Variovorax sp. SCN45 0.44 GFF928 tRNA-dihydrouridine(20/20a) synthase (EC 1.3.1.91) 0.30 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) 0.65 59
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_00295 tRNA-dihydrouridine synthase A 0.31 AO353_20660 pseudouridine synthase low > 101
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS11300 tRNA dihydrouridine(20/20a) synthase DusA 0.34 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA low > 80
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_00766 tRNA-U16,U17-dihydrouridine synthase 0.32 H281DRAFT_06069 tRNA pseudouridine38-40 synthase low > 103
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS15730 tRNA dihydrouridine(20/20a) synthase DusA 0.35 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum UW163 0.44 UW163_RS13175 tRNA dihydrouridine(20/20a) synthase DusA 0.35 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA — —
Alteromonas macleodii MIT1002 0.44 MIT1002_03387 putative tRNA-dihydrouridine synthase 0.33 MIT1002_02529 tRNA pseudouridine synthase A low > 70
Ralstonia solanacearum GMI1000 0.44 RS_RS06510 tRNA dihydrouridine(20/20a) synthase DusA 0.35 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA low > 80
Acinetobacter radioresistens SK82 0.44 MPMX26_00482 tRNA-dihydrouridine(20/20a) synthase 0.29 MPMX26_00352 tRNA pseudouridine synthase A low > 36
Acidovorax sp. GW101-3H11 0.44 Ac3H11_2288 tRNA dihydrouridine synthase A 0.30 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 79
Variovorax sp. OAS795 0.43 ABID97_RS13915 tRNA dihydrouridine(20/20a) synthase DusA 0.29 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA low > 91
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS12665 tRNA-dihydrouridine synthase A 0.31 RR42_RS14370 tRNA pseudouridine synthase A — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF4791 tRNA dihydrouridine synthase A 0.28 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 90
Pseudomonas fluorescens GW456-L13 0.41 PfGW456L13_3987 tRNA dihydrouridine synthase A 0.31 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Castellaniella sp019104865 MT123 0.40 ABCV34_RS04335 tRNA dihydrouridine(20/20a) synthase DusA 0.33 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA 0.96 20

Not shown: 1 genomes with orthologs for Atu1515 only; 18 genomes with orthologs for Atu0368 only