Conservation of cofitness between Atu0085 and Atu0368 in Agrobacterium fabrum C58

82 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu0085 tRNA pseudouridine 55 synthase 1.0 Atu0368 tRNA pseudouridine synthase I 0.28 5
Rhizobium sp. OAE497 0.83 ABIE40_RS00345 tRNA pseudouridine(55) synthase TruB 0.78 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA low > 107
Sinorhizobium meliloti 1021 0.80 SMc00321 tRNA pseudouridine synthase B 0.74 SMc01099 tRNA pseudouridine synthase A 0.50 76
Rhodopseudomonas palustris CGA009 0.53 TX73_002255 tRNA pseudouridine(55) synthase TruB 0.50 TX73_003225 tRNA pseudouridine(38-40) synthase TruA low > 86
Bosea sp. OAE506 0.52 ABIE41_RS04565 tRNA pseudouridine(55) synthase TruB 0.47 ABIE41_RS00165 tRNA pseudouridine(38-40) synthase TruA 0.38 66
Dinoroseobacter shibae DFL-12 0.45 Dshi_3042 tRNA pseudouridine synthase B (RefSeq) 0.48 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) low > 64
Azospirillum sp. SherDot2 0.44 MPMX19_02524 tRNA pseudouridine synthase B 0.53 MPMX19_02005 tRNA pseudouridine synthase A — —
Magnetospirillum magneticum AMB-1 0.44 AMB_RS20810 tRNA pseudouridine(55) synthase TruB 0.51 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA low > 64
Phaeobacter inhibens DSM 17395 0.43 PGA1_c32950 tRNA pseudouridine synthase B 0.47 PGA1_c05650 tRNA pseudouridine synthase A low > 62
Caulobacter crescentus NA1000 0.43 CCNA_00035 tRNA pseudouridine synthase B 0.51 CCNA_00280 tRNA pseudouridine synthase A low > 66
Caulobacter crescentus NA1000 Δfur 0.43 CCNA_00035 tRNA pseudouridine synthase B 0.51 CCNA_00280 tRNA pseudouridine synthase A low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.42 A4249_RS13345 tRNA pseudouridine(55) synthase TruB 0.46 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA low > 48
Rhodospirillum rubrum S1H 0.40 Rru_A3783 tRNA pseudouridine synthase B (NCBI) 0.50 Rru_A3352 Pseudouridylate synthase (NCBI) — —
Pseudomonas simiae WCS417 0.34 PS417_23960 pseudouridine synthase 0.30 PS417_18565 pseudouridine synthase — —
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_4178 tRNA pseudouridine synthase B 0.31 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_4178 tRNA pseudouridine synthase B 0.31 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas stutzeri RCH2 0.33 Psest_0983 tRNA pseudouridine 55 synthase 0.30 Psest_2585 pseudouridylate synthase I — —
Pseudomonas sp. S08-1 0.33 OH686_17155 tRNA pseudouridine(55) synthase 0.34 OH686_04450 tRNA pseudouridine(38-40) synthase low > 80
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_5086 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.31 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.34 82
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_05550 pseudouridine synthase 0.31 AO353_20660 pseudouridine synthase low > 101
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.30 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25 0.33 PFLU_RS25800 tRNA pseudouridine(55) synthase TruB 0.30 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas putida KT2440 0.33 PP_4710 tRNA pseudouridine 55 synthase 0.32 PP_1994 tRNA pseudouridine (38-40)synthase 0.41 8
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_07400 pseudouridine synthase 0.31 AO356_21435 pseudouridine synthase 0.32 31
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_1159 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.31 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_3351 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.31 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 103
Pseudomonas sp. RS175 0.33 PFR28_00092 tRNA pseudouridine synthase B 0.31 PFR28_02817 tRNA pseudouridine synthase A — —
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_0108 tRNA pseudouridine 55 synthase 0.30 B158DRAFT_1483 pseudouridylate synthase I low > 40
Paraburkholderia graminis OAS925 0.32 ABIE53_001832 tRNA pseudouridine55 synthase 0.32 ABIE53_004807 tRNA pseudouridine38-40 synthase 0.36 6
Rhodanobacter denitrificans MT42 0.32 LRK55_RS00810 tRNA pseudouridine(55) synthase TruB 0.26 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA low > 63
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS01035 tRNA pseudouridine(55) synthase TruB 0.26 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA low > 59
Burkholderia phytofirmans PsJN 0.31 BPHYT_RS08080 tRNA pseudouridine synthase B 0.32 BPHYT_RS33885 tRNA pseudouridine synthase A 0.69 1
Dechlorosoma suillum PS 0.31 Dsui_2720 tRNA pseudouridine 55 synthase 0.34 Dsui_3194 pseudouridylate synthase I low > 51
Paraburkholderia bryophila 376MFSha3.1 0.31 H281DRAFT_05106 tRNA pseudouridine synthase B 0.32 H281DRAFT_06069 tRNA pseudouridine38-40 synthase low > 103
Alteromonas macleodii MIT1002 0.31 MIT1002_01773 tRNA pseudouridine synthase B 0.33 MIT1002_02529 tRNA pseudouridine synthase A low > 70
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_05860 truB tRNA pseudouridine(55) synthase TruB 0.25 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA — —
Paraburkholderia sabiae LMG 24235 0.30 QEN71_RS23090 tRNA pseudouridine(55) synthase TruB 0.33 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA low > 153
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_2142 tRNA pseudouridine(55) synthase 0.46 Ga0059261_0647 tRNA pseudouridine(38-40) synthase 0.30 32
Shewanella loihica PV-4 0.29 Shew_2825 tRNA pseudouridine synthase B (RefSeq) 0.31 Shew_2306 tRNA pseudouridine synthase A (RefSeq) — —
Pectobacterium carotovorum WPP14 0.29 HER17_RS18200 tRNA pseudouridine(55) synthase TruB 0.31 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75
Acinetobacter radioresistens SK82 0.29 MPMX26_02778 tRNA pseudouridine synthase B 0.29 MPMX26_00352 tRNA pseudouridine synthase A low > 36
Vibrio cholerae E7946 ATCC 55056 0.29 CSW01_03400 tRNA pseudouridine(55) synthase TruB 0.33 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA low > 62
Cupriavidus basilensis FW507-4G11 0.28 RR42_RS12835 tRNA pseudouridine synthase B 0.31 RR42_RS14370 tRNA pseudouridine synthase A — —
Pantoea sp. MT58 0.28 IAI47_17015 tRNA pseudouridine(55) synthase TruB 0.28 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA low > 76
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.2004.1 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.30 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 74
Escherichia coli ECRC101 0.28 MCAODC_08645 truB tRNA pseudouridine(55) synthase TruB 0.32 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase — —
Dickeya dadantii 3937 0.28 DDA3937_RS03080 tRNA pseudouridine(55) synthase TruB 0.32 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA low > 74
Escherichia coli ECOR38 0.28 HEPCGN_17000 truB tRNA pseudouridine(55) synthase TruB 0.32 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase low > 85
Escherichia coli Nissle 1917 0.28 ECOLIN_RS18185 tRNA pseudouridine(55) synthase TruB 0.32 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA low > 52
Escherichia coli BL21 0.28 ECD_03033 tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase 0.32 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.28 OHPLBJKB_00534 tRNA pseudouridine synthase B 0.32 OHPLBJKB_01387 tRNA pseudouridine synthase A low > 73
Escherichia coli ECRC102 0.28 NIAGMN_15885 truB tRNA pseudouridine(55) synthase TruB 0.32 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli BW25113 0.28 b3166 truB tRNA pseudouridine synthase B (NCBI) 0.31 b2318 truA tRNA pseudouridine synthase A (NCBI) low > 76
Variovorax sp. OAS795 0.28 ABID97_RS16475 tRNA pseudouridine(55) synthase TruB 0.29 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA low > 91
Escherichia coli ECRC99 0.28 KEDOAH_10025 truB tRNA pseudouridine(55) synthase TruB 0.32 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC101 0.28 OKFHMN_18125 truB tRNA pseudouridine(55) synthase TruB 0.32 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC98 0.28 JDDGAC_21750 truB tRNA pseudouridine(55) synthase TruB 0.32 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Shewanella amazonensis SB2B 0.28 Sama_0963 pseudouridylate synthase (RefSeq) 0.34 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) low > 62
Escherichia fergusonii Becca 0.27 EFB2_00657 tRNA pseudouridine synthase B 0.31 EFB2_01540 tRNA pseudouridine synthase A low > 86
Lysobacter sp. OAE881 0.27 ABIE51_RS08405 tRNA pseudouridine(55) synthase TruB 0.31 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA low > 62
Erwinia tracheiphila SCR3 0.27 LU632_RS21050 truB tRNA pseudouridine(55) synthase TruB 0.30 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA — —
Klebsiella michiganensis M5al 0.27 BWI76_RS25080 tRNA pseudouridine(55) synthase 0.31 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA low > 92
Enterobacter asburiae PDN3 0.27 EX28DRAFT_3217 tRNA pseudouridine(55) synthase 0.32 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase low > 76
Dickeya dianthicola 67-19 0.27 HGI48_RS03250 tRNA pseudouridine(55) synthase TruB 0.32 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF1500 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.31 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 78
Enterobacter sp. TBS_079 0.27 MPMX20_04071 tRNA pseudouridine synthase B 0.31 MPMX20_03253 tRNA pseudouridine synthase A 0.22 45
Escherichia coli ECOR27 0.27 NOLOHH_09925 truB tRNA pseudouridine(55) synthase TruB 0.32 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA low > 57
Escherichia coli ECRC62 0.27 BNILDI_01610 truB tRNA pseudouridine(55) synthase TruB 0.32 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA — —
Serratia liquefaciens MT49 0.27 IAI46_01945 tRNA pseudouridine(55) synthase TruB 0.31 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Rahnella sp. WP5 0.27 EX31_RS08530 tRNA pseudouridine(55) synthase TruB 0.30 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA low > 89
Variovorax sp. SCN45 0.27 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.30 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) low > 127
Dickeya dianthicola ME23 0.27 DZA65_RS03245 tRNA pseudouridine(55) synthase TruB 0.32 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA low > 75
Shewanella sp. ANA-3 0.27 Shewana3_1032 tRNA pseudouridine synthase B (RefSeq) 0.31 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) low > 73
Ralstonia solanacearum PSI07 0.27 RPSI07_RS17665 tRNA pseudouridine(55) synthase TruB 0.34 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA low > 81
Ralstonia solanacearum GMI1000 0.27 RS_RS06470 tRNA pseudouridine(55) synthase TruB 0.35 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA low > 80
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS11220 tRNA pseudouridine(55) synthase TruB 0.34 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA low > 80
Ralstonia solanacearum IBSBF1503 0.27 RALBFv3_RS15690 tRNA pseudouridine(55) synthase TruB 0.35 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA — —
Ralstonia solanacearum UW163 0.27 UW163_RS13150 tRNA pseudouridine(55) synthase TruB 0.35 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA — —
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS06015 tRNA pseudouridine(55) synthase TruB 0.27 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA low > 74
Acidovorax sp. GW101-3H11 0.26 Ac3H11_2865 tRNA pseudouridine synthase B (EC 4.2.1.70) 0.30 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 79
Marinobacter adhaerens HP15 0.26 HP15_3065 tRNA pseudouridine synthase B 0.33 HP15_1829 tRNA pseudouridine synthase A low > 73
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_1222 truB tRNA pseudouridine synthase B 0.23 Synpcc7942_2207 truA tRNA pseudouridine synthase A — —
Desulfovibrio vulgaris Hildenborough JW710 0.21 DVU0505 truB tRNA pseudouridine synthase B (TIGR) 0.23 DVU0911 truA tRNA pseudouridine synthase A (TIGR) low > 55

Not shown: 0 genomes with orthologs for Atu0085 only; 18 genomes with orthologs for Atu0368 only