Conservation of cofitness between Dshi_1938 and Dshi_0315 in Dinoroseobacter shibae DFL-12

83 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dinoroseobacter shibae DFL-12 1.0 Dshi_1938 tRNA pseudouridine synthase A (RefSeq) 1.0 Dshi_0315 pseudouridine synthase, RluA family (RefSeq) 0.35 19
Phaeobacter inhibens DSM 17395 0.72 PGA1_c05650 tRNA pseudouridine synthase A 0.64 PGA1_c01950 ribosomal large subunit pseudouridine synthase C — —
Rhizobium sp. OAE497 0.53 ABIE40_RS01915 tRNA pseudouridine(38-40) synthase TruA 0.38 ABIE40_RS09915 RluA family pseudouridine synthase 0.27 51
Azospirillum sp. SherDot2 0.53 MPMX19_02005 tRNA pseudouridine synthase A 0.44 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C — —
Azospirillum brasilense Sp245 0.52 AZOBR_RS03570 tRNA pseudouridine synthase A 0.43 AZOBR_RS06905 pseudouridine synthase — —
Agrobacterium fabrum C58 0.50 Atu0368 tRNA pseudouridine synthase I 0.39 Atu1471 ribosomal large subunit pseudouridine synthase C — —
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_00280 tRNA pseudouridine synthase A 0.37 CCNA_02059 ribosomal large subunit pseudouridine synthase C low > 67
Caulobacter crescentus NA1000 0.50 CCNA_00280 tRNA pseudouridine synthase A 0.37 CCNA_02059 ribosomal large subunit pseudouridine synthase C low > 66
Sinorhizobium meliloti 1021 0.49 SMc01099 tRNA pseudouridine synthase A 0.39 SMc01275 ribosomal large subunit pseudouridine synthase C protein 0.71 29
Magnetospirillum magneticum AMB-1 0.49 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA 0.39 AMB_RS15620 RluA family pseudouridine synthase low > 64
Sphingomonas koreensis DSMZ 15582 0.48 Ga0059261_0647 tRNA pseudouridine(38-40) synthase 0.38 Ga0059261_1033 pseudouridine synthase, RluA family — —
Rhodospirillum rubrum S1H 0.47 Rru_A3352 Pseudouridylate synthase (NCBI) 0.40 Rru_A2659 Pseudouridine synthase, RluD (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.46 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA 0.35 A4249_RS07865 RluA family pseudouridine synthase low > 48
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA 0.20 QEN71_RS04500 RluA family pseudouridine synthase 0.75 16
Ralstonia solanacearum UW163 0.36 UW163_RS11130 tRNA pseudouridine(38-40) synthase TruA 0.20 UW163_RS11840 RluA family pseudouridine synthase — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS02595 tRNA pseudouridine(38-40) synthase TruA 0.20 RALBFv3_RS14375 RluA family pseudouridine synthase — —
Ralstonia solanacearum PSI07 0.35 RPSI07_RS14720 tRNA pseudouridine(38-40) synthase TruA 0.21 RPSI07_RS19085 RluA family pseudouridine synthase low > 81
Ralstonia solanacearum GMI1000 0.35 RS_RS09975 tRNA pseudouridine(38-40) synthase TruA 0.21 RS_RS05155 RluA family pseudouridine synthase low > 80
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS14510 tRNA pseudouridine(38-40) synthase TruA 0.21 ABZR87_RS10090 RluA family pseudouridine synthase low > 80
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS14370 tRNA pseudouridine synthase A 0.21 RR42_RS14155 pseudouridine synthase — —
Paraburkholderia graminis OAS925 0.34 ABIE53_004807 tRNA pseudouridine38-40 synthase 0.20 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_06069 tRNA pseudouridine38-40 synthase 0.20 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase low > 103
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS33885 tRNA pseudouridine synthase A 0.20 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C 0.65 18
Pseudomonas sp. S08-1 0.33 OH686_04450 tRNA pseudouridine(38-40) synthase 0.24 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase low > 80
Alteromonas macleodii MIT1002 0.33 MIT1002_02529 tRNA pseudouridine synthase A 0.22 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C low > 70
Dechlorosoma suillum PS 0.32 Dsui_3194 pseudouridylate synthase I 0.22 Dsui_2437 pseudouridine synthase, RluA family low > 51
Variovorax sp. OAS795 0.32 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA 0.22 ABID97_RS08250 RluA family pseudouridine synthase low > 91
Shewanella amazonensis SB2B 0.32 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) 0.22 Sama_1988 pseudouridylate synthase (RefSeq) low > 62
Acidovorax sp. GW101-3H11 0.32 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.21 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 79
Variovorax sp. SCN45 0.32 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) 0.23 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) low > 127
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS16485 tRNA pseudouridine synthase A 0.19 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C low > 78
Rahnella sp. WP5 0.31 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA 0.21 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 89
Pseudomonas putida KT2440 0.31 PP_1994 tRNA pseudouridine (38-40)synthase 0.22 PP_1906 ribosomal large subunit pseudouridine synthase C low > 96
Vibrio cholerae E7946 ATCC 55056 0.31 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA 0.24 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 62
Enterobacter asburiae PDN3 0.31 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase 0.23 EX28DRAFT_1844 pseudouridine synthase, RluA family low > 76
Enterobacter sp. TBS_079 0.31 MPMX20_03253 tRNA pseudouridine synthase A 0.23 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C low > 85
Serratia liquefaciens MT49 0.31 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA 0.20 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Castellaniella sp019104865 MT123 0.31 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA 0.21 ABCV34_RS08415 RluA family pseudouridine synthase low > 48
Klebsiella michiganensis M5al 0.30 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA 0.22 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.24 14
Escherichia coli ECRC101 0.30 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase 0.22 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Shewanella loihica PV-4 0.30 Shew_2306 tRNA pseudouridine synthase A (RefSeq) 0.22 Shew_1594 RluA family pseudouridine synthase (RefSeq) — —
Escherichia coli Nissle 1917 0.30 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA 0.22 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 52
Erwinia tracheiphila SCR3 0.30 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA 0.25 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC98 0.30 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase 0.22 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Pectobacterium carotovorum WPP14 0.30 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA 0.22 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli ECOR38 0.30 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase 0.22 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 85
Escherichia coli ECRC102 0.30 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase 0.22 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC99 0.30 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase 0.22 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC101 0.30 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase 0.22 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Dickeya dianthicola ME23 0.30 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA 0.21 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.22 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 78
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_1483 pseudouridylate synthase I 0.24 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) low > 40
Escherichia coli ECRC62 0.30 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA 0.22 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Dickeya dianthicola 67-19 0.30 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA 0.21 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 71
Dickeya dadantii 3937 0.30 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA 0.20 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.66 19
Escherichia coli BL21 0.30 ECD_02243 tRNA pseudouridine(38-40) synthase 0.22 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase — —
Escherichia coli BW25113 0.30 b2318 truA tRNA pseudouridine synthase A (NCBI) 0.22 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) low > 76
Escherichia coli ECOR27 0.30 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA 0.22 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_01387 tRNA pseudouridine synthase A 0.22 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C low > 73
Escherichia fergusonii Becca 0.30 EFB2_01540 tRNA pseudouridine synthase A 0.22 EFB2_02889 Ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas sp. RS175 0.29 PFR28_02817 tRNA pseudouridine synthase A 0.23 PFR28_03018 Ribosomal large subunit pseudouridine synthase C low > 88
Pseudomonas fluorescens FW300-N1B4 0.29 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.23 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.23 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 87
Pantoea sp. MT58 0.29 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA 0.22 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 76
Pseudomonas fluorescens FW300-N2C3 0.29 AO356_21435 pseudouridine synthase 0.23 AO356_20125 23S rRNA pseudouridylate synthase low > 104
Pseudomonas fluorescens FW300-N2E2 0.29 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.23 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 103
Shewanella sp. ANA-3 0.29 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) 0.22 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) low > 73
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_1662 tRNA pseudouridine synthase 0.23 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Hydrogenophaga sp. GW460-11-11-14-LB1 0.29 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.20 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.82 5
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_20660 pseudouridine synthase 0.23 AO353_01405 23S rRNA pseudouridylate synthase low > 101
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_1662 tRNA pseudouridine synthase 0.23 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Xanthomonas campestris pv. campestris strain 8004 0.28 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.19 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 74
Pseudomonas stutzeri RCH2 0.28 Psest_2585 pseudouridylate synthase I 0.23 Psest_1680 pseudouridine synthase, RluA family — —
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.23 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Pseudomonas fluorescens SBW25 0.28 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.23 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Marinobacter adhaerens HP15 0.28 HP15_1829 tRNA pseudouridine synthase A 0.21 HP15_2221 pseudouridine synthase, RluA family low > 73
Pseudomonas simiae WCS417 0.28 PS417_18565 pseudouridine synthase 0.22 PS417_21480 23S rRNA pseudouridylate synthase — —
Acinetobacter radioresistens SK82 0.27 MPMX26_00352 tRNA pseudouridine synthase A 0.18 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C low > 36
Lysobacter sp. OAE881 0.27 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA 0.18 ABIE51_RS11800 RluA family pseudouridine synthase low > 62
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA 0.20 ABZR86_RS02725 RluA family pseudouridine synthase low > 74
Rhodanobacter sp. FW510-T8 0.26 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA 0.20 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase — —
Rhodanobacter denitrificans MT42 0.25 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA 0.20 LRK55_RS17750 RluA family pseudouridine synthase low > 63
Rhodanobacter denitrificans FW104-10B01 0.25 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA 0.20 LRK54_RS17895 RluA family pseudouridine synthase low > 59
Fusobacterium nucleatum SB010 0.21 HUW76_09850 tRNA pseudouridine(38-40) synthase TruA 0.15 HUW76_04985 RluA family pseudouridine synthase low > 35

Not shown: 17 genomes with orthologs for Dshi_1938 only; 0 genomes with orthologs for Dshi_0315 only