Conservation of cofitness between BT3843 and BT4331 in Bacteroides thetaiotaomicron VPI-5482

77 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Bacteroides thetaiotaomicron VPI-5482 1.0 BT3843 ATP-dependent Clp protease ATP-binding subunit (NCBI ptt file) 1.0 BT4331 conserved hypothetical protein (NCBI ptt file) 0.43 6
Bacteroides ovatus ATCC 8483 0.98 BACOVA_00336 ATP-dependent Clp protease, ATP-binding subunit ClpX 0.97 BACOVA_05134 hypothetical protein low > 94
Bacteroides stercoris CC31F 0.90 HMPREF1181_RS07445 ATP-dependent Clp protease ATP-binding subunit ClpX 0.87 HMPREF1181_RS05925 class I SAM-dependent rRNA methyltransferase low > 56
Phocaeicola dorei CL03T12C01 0.85 ABI39_RS02325 ATP-dependent Clp protease ATP-binding subunit ClpX 0.86 ABI39_RS18215 class I SAM-dependent rRNA methyltransferase — —
Phocaeicola vulgatus CL09T03C04 0.85 HMPREF1058_RS03080 ATP-dependent Clp protease ATP-binding subunit ClpX 0.84 HMPREF1058_RS05890 class I SAM-dependent rRNA methyltransferase low > 67
Parabacteroides merdae CL09T00C40 0.76 HMPREF1078_RS17045 ATP-dependent Clp protease ATP-binding subunit ClpX 0.76 HMPREF1078_RS13685 class I SAM-dependent rRNA methyltransferase low > 61
Pedobacter sp. GW460-11-11-14-LB5 0.67 CA265_RS04275 ATP-dependent protease ATP-binding subunit ClpX 0.32 CA265_RS19815 RlmI/RlmK family 23S rRNA methyltransferase low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.66 ABZR88_RS06965 ATP-dependent Clp protease ATP-binding subunit ClpX 0.31 ABZR88_RS22040 class I SAM-dependent rRNA methyltransferase low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.65 Echvi_4635 endopeptidase Clp ATP-binding regulatory subunit (clpX) 0.54 Echvi_3350 Predicted SAM-dependent methyltransferases — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.63 CA264_01405 ATP-dependent Clp protease ATP-binding subunit ClpX 0.57 CA264_05605 RlmI/RlmK family 23S rRNA methyltransferase low > 74
Pseudomonas simiae WCS417 0.53 PS417_17230 Clp protease ATP-binding protein 0.20 PS417_26880 SAM-dependent methyltransferase — —
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS19165 ATP-dependent Clp protease ATP-binding subunit ClpX 0.20 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase low > 109
Pseudomonas fluorescens SBW25 0.53 PFLU_RS19165 ATP-dependent Clp protease ATP-binding subunit ClpX 0.20 PFLU_RS28525 class I SAM-dependent rRNA methyltransferase low > 109
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_20180 ATP-dependent Clp protease ATP-binding subunit ClpX 0.20 AO353_08330 SAM-dependent methyltransferase — —
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_2553 ATP-dependent Clp protease ATP-binding subunit ClpX 0.20 PfGW456L13_977 LSU m5C1962 methyltransferase RlmI low > 87
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_3946 ATP-dependent Clp protease ATP-binding subunit ClpX 0.20 Pf1N1B4_2307 LSU m5C1962 methyltransferase RlmI — —
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_01745 ATP-dependent Clp protease ATP-binding subunit ClpX 0.20 AO356_13260 SAM-dependent methyltransferase low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.52 Psyr_1748 ATP-dependent Clp protease ATP-binding subunit ClpX 0.19 Psyr_4764 SAM-dependent methyltransferase low > 86
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_2217 ATP-dependent Clp protease ATP-binding subunit ClpX 0.20 Pf6N2E2_4566 LSU m5C1962 methyltransferase RlmI low > 103
Pseudomonas syringae pv. syringae B728a 0.52 Psyr_1748 ATP-dependent Clp protease ATP-binding subunit ClpX 0.19 Psyr_4764 SAM-dependent methyltransferase low > 86
Pseudomonas sp. RS175 0.52 PFR28_01229 ATP-dependent Clp protease ATP-binding subunit ClpX 0.20 PFR28_04274 Ribosomal RNA large subunit methyltransferase I — —
Pseudomonas putida KT2440 0.52 PP_2301 ATP-dependent Clp protease ATP-binding subunit ClpX 0.19 PP_5127 ribosomal RNA large subunit methyltransferase I — —
Pseudomonas stutzeri RCH2 0.52 Psest_2286 endopeptidase Clp ATP-binding regulatory subunit (clpX) 0.20 Psest_0236 Predicted SAM-dependent methyltransferases — —
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS21980 ATP-dependent Clp protease ATP-binding subunit ClpX 0.36 QEN71_RS00350 class I SAM-dependent rRNA methyltransferase low > 153
Ralstonia solanacearum PSI07 0.51 RPSI07_RS16130 ATP-dependent Clp protease ATP-binding subunit ClpX 0.35 RPSI07_RS23695 class I SAM-dependent rRNA methyltransferase low > 81
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS07325 ATP-dependent Clp protease ATP-binding subunit ClpX 0.23 ABZR86_RS16890 class I SAM-dependent rRNA methyltransferase — —
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS09025 Clp protease ATP-binding protein 0.32 RR42_RS01670 23S rRNA methyltransferase — —
Ralstonia solanacearum GMI1000 0.51 RS_RS08650 ATP-dependent Clp protease ATP-binding subunit ClpX 0.35 RS_RS00255 class I SAM-dependent rRNA methyltransferase low > 80
Ralstonia solanacearum IBSBF1503 0.51 RALBFv3_RS01345 ATP-dependent Clp protease ATP-binding subunit ClpX 0.35 RALBFv3_RS09670 class I SAM-dependent rRNA methyltransferase — —
Ralstonia solanacearum UW163 0.51 UW163_RS14655 ATP-dependent Clp protease ATP-binding subunit ClpX 0.35 UW163_RS03910 class I SAM-dependent rRNA methyltransferase — —
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS16730 ATP-dependent Clp protease ATP-binding subunit ClpX 0.22 LRK54_RS06920 class I SAM-dependent rRNA methyltransferase low > 59
Rhodanobacter sp. FW510-T8 0.51 OKGIIK_08035 clpX ATP-dependent Clp protease ATP-binding subunit ClpX 0.20 OKGIIK_16710 rlmK RlmI/RlmK family 23S rRNA methyltransferase — —
Rhodanobacter denitrificans MT42 0.51 LRK55_RS16455 ATP-dependent Clp protease ATP-binding subunit ClpX 0.21 LRK55_RS06665 class I SAM-dependent rRNA methyltransferase low > 63
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_00897 ATP-dependent Clp protease ATP-binding subunit ClpX 0.34 H281DRAFT_02203 SAM-dependent methyltransferase /23S rRNA m(5)C-1962 methyltransferase — —
Marinobacter adhaerens HP15 0.51 HP15_2184 ATP-dependent Clp protease ATP-binding subunit ClpX 0.17 HP15_460 SAM-dependent methyltransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.4047.1 ATP-dependent Clp protease ATP-binding subunit ClpX 0.25 Xcc-8004.5393.1 LSU m5C1962 methyltransferase RlmI — —
Ralstonia sp. UNC404CL21Col 0.51 ABZR87_RS12790 ATP-dependent Clp protease ATP-binding subunit ClpX 0.36 ABZR87_RS05070 class I SAM-dependent rRNA methyltransferase low > 80
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS09455 ATP-dependent Clp protease ATP-binding subunit ClpX 0.34 BPHYT_RS01650 23S rRNA methyltransferase — —
Lysobacter sp. OAE881 0.51 ABIE51_RS14150 ATP-dependent Clp protease ATP-binding subunit ClpX 0.24 ABIE51_RS00980 class I SAM-dependent rRNA methyltransferase low > 62
Paraburkholderia graminis OAS925 0.51 ABIE53_002116 ATP-dependent Clp protease ATP-binding subunit ClpX 0.34 ABIE53_000425 23S rRNA (cytosine1962-C5)-methyltransferase low > 113
Variovorax sp. OAS795 0.50 ABID97_RS17595 ATP-dependent Clp protease ATP-binding subunit ClpX 0.27 ABID97_RS06155 class I SAM-dependent methyltransferase low > 91
Variovorax sp. SCN45 0.50 GFF488 ATP-dependent Clp protease ATP-binding subunit ClpX 0.28 GFF4489 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) low > 127
Azospirillum brasilense Sp245 0.50 AZOBR_RS07140 ATP-dependent protease 0.22 AZOBR_RS01190 SAM-dependent methyltransferase — —
Escherichia fergusonii Becca 0.50 EFB2_03619 ATP-dependent Clp protease ATP-binding subunit ClpX 0.32 EFB2_03104 Ribosomal RNA large subunit methyltransferase I low > 86
Enterobacter asburiae PDN3 0.50 EX28DRAFT_2533 endopeptidase Clp ATP-binding regulatory subunit (clpX) 0.33 EX28DRAFT_1976 Predicted SAM-dependent methyltransferases — —
Escherichia coli ECRC102 0.50 NIAGMN_06385 clpX ATP-dependent protease ATP-binding subunit ClpX 0.32 NIAGMN_02905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli ECOR38 0.50 HEPCGN_06945 clpX ATP-dependent protease ATP-binding subunit ClpX 0.32 HEPCGN_23335 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 85
Escherichia coli ECRC98 0.50 JDDGAC_11985 clpX ATP-dependent protease ATP-binding subunit ClpX 0.32 JDDGAC_08795 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Fusobacterium nucleatum SB010 0.50 HUW76_01060 ATP-dependent Clp protease ATP-binding subunit ClpX 0.23 HUW76_04950 class I SAM-dependent rRNA methyltransferase low > 35
Escherichia coli Nissle 1917 0.50 ECOLIN_RS02630 ATP-dependent protease ATP-binding subunit ClpX 0.32 ECOLIN_RS05085 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli ECRC62 0.50 BNILDI_22680 clpX ATP-dependent protease ATP-binding subunit ClpX 0.32 BNILDI_19905 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli ECRC101 0.50 OKFHMN_08330 clpX ATP-dependent protease ATP-binding subunit ClpX 0.32 OKFHMN_05185 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli ECRC101 0.50 MCAODC_27555 clpX ATP-dependent protease ATP-binding subunit ClpX 0.32 MCAODC_24575 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli BL21 0.50 ECD_00389 ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease 0.32 ECD_00971 23S rRNA m(5)C1962 methyltransferase, SAM-dependent low > 60
Escherichia coli ECOR27 0.50 NOLOHH_01265 clpX ATP-dependent protease ATP-binding subunit ClpX 0.32 NOLOHH_21740 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03235 ATP-dependent Clp protease ATP-binding subunit ClpX 0.32 OHPLBJKB_02699 Ribosomal RNA large subunit methyltransferase I low > 73
Escherichia coli ECRC99 0.50 KEDOAH_19635 clpX ATP-dependent protease ATP-binding subunit ClpX 0.32 KEDOAH_22550 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Escherichia coli BW25113 0.50 b0438 clpX ATP-dependent protease ATP-binding subunit (NCBI) 0.32 b0967 yccW predicted methyltransferase (RefSeq) low > 76
Enterobacter sp. TBS_079 0.50 MPMX20_01029 ATP-dependent Clp protease ATP-binding subunit ClpX 0.33 MPMX20_01617 Ribosomal RNA large subunit methyltransferase I low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF4354 ATP-dependent Clp protease ATP-binding subunit ClpX 0.32 GFF3258 LSU m5C1962 methyltransferase RlmI low > 78
Alteromonas macleodii MIT1002 0.50 MIT1002_02759 ATP-dependent Clp protease ATP-binding subunit ClpX 0.32 MIT1002_01688 Ribosomal RNA large subunit methyltransferase I low > 70
Shewanella sp. ANA-3 0.50 Shewana3_2660 clpX ATP-dependent protease ATP-binding subunit ClpX (RefSeq) 0.33 Shewana3_0977 SAM-dependent methyltransferase (RefSeq) low > 73
Azospirillum sp. SherDot2 0.50 MPMX19_01547 ATP-dependent Clp protease ATP-binding subunit ClpX 0.21 MPMX19_00203 Ribosomal RNA large subunit methyltransferase I — —
Acidovorax sp. GW101-3H11 0.50 Ac3H11_936 ATP-dependent Clp protease ATP-binding subunit ClpX 0.25 Ac3H11_2000 LSU m5C1962 methyltransferase RlmI — —
Shewanella amazonensis SB2B 0.50 Sama_1225 clpX ATP-dependent protease ATP-binding subunit ClpX (RefSeq) 0.32 Sama_2965 putative SAM-dependent methyltransferase (RefSeq) low > 62
Klebsiella michiganensis M5al 0.50 BWI76_RS06530 ATP-dependent Clp protease ATP-binding subunit ClpX 0.34 BWI76_RS10045 23S rRNA (cytosine(1962)-C(5))-methyltransferase low > 92
Shewanella oneidensis MR-1 0.49 SO1795 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX (NCBI ptt file) 0.33 SO1149 hypothetical SAM-dependent methyltransferase (NCBI ptt file) low > 76
Dechlorosoma suillum PS 0.49 Dsui_2197 endopeptidase Clp ATP-binding regulatory subunit ClpX 0.32 Dsui_0653 putative SAM-dependent methyltransferase low > 51
Rahnella sp. WP5 0.49 EX31_RS22250 ATP-dependent protease ATP-binding subunit ClpX 0.32 EX31_RS17990 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 89
Rhodospirillum rubrum S1H 0.49 Rru_A1551 ClpX, ATPase regulatory subunit (NCBI) 0.20 Rru_A3333 hypothetical protein (NCBI) — —
Erwinia tracheiphila SCR3 0.49 LU632_RS18340 clpX ATP-dependent protease ATP-binding subunit ClpX 0.32 LU632_RS10090 rlmI 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Pantoea sp. MT58 0.49 IAI47_14650 ATP-dependent protease ATP-binding subunit ClpX 0.33 IAI47_12595 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI — —
Magnetospirillum magneticum AMB-1 0.49 AMB_RS14040 ATP-dependent Clp protease ATP-binding subunit ClpX 0.23 AMB_RS22065 class I SAM-dependent rRNA methyltransferase — —
Dinoroseobacter shibae DFL-12 0.49 Dshi_1387 ATP-dependent Clp protease, ATP-binding subunit ClpX (RefSeq) 0.17 Dshi_1771 hypothetical protein (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.49 PGA1_c12530 ATP-dependent Clp protease ATP-binding subunit ClpX 0.16 PGA1_c19990 ribosomal RNA large subunit methyltransferase I low > 62
Serratia liquefaciens MT49 0.49 IAI46_05015 ATP-dependent protease ATP-binding subunit ClpX 0.32 IAI46_08925 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI low > 86
Vibrio cholerae E7946 ATCC 55056 0.48 CSW01_09610 ATP-dependent Clp protease ATP-binding subunit ClpX 0.32 CSW01_06820 ribosomal RNA large subunit methyltransferase I — —
Desulfovibrio vulgaris Hildenborough JW710 0.47 DVU1336 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX (TIGR) 0.20 DVU0495 conserved hypothetical protein (TIGR) low > 55

Not shown: 23 genomes with orthologs for BT3843 only; 3 genomes with orthologs for BT4331 only