Conservation of cofitness between SO0760 and SO1271 in Shewanella oneidensis MR-1

88 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella oneidensis MR-1 1.0 SO0760 amt ammonium transporter (NCBI ptt file) 1.0 SO1271 polyamine ABC transporter, ATP-binding protein (NCBI ptt file) 0.72 4
Shewanella sp. ANA-3 0.98 Shewana3_3531 Rh family protein/ammonium transporter (RefSeq) 0.98 Shewana3_3096 spermidine/putrescine ABC transporter ATPase subunit (RefSeq) low > 73
Shewanella loihica PV-4 0.90 Shew_0847 Rh family protein/ammonium transporter (RefSeq) 0.83 Shew_0974 spermidine/putrescine ABC transporter ATPase subunit (RefSeq) low > 60
Shewanella amazonensis SB2B 0.86 Sama_0651 Rh-like protein/ammonium transporter (RefSeq) 0.88 Sama_2641 polyamine ABC transporter, ATP-binding protein (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.75 CSW01_03200 ammonium transporter 0.35 CSW01_07160 spermidine/putrescine ABC transporter ATP-binding protein low > 62
Pseudomonas segetis P6 0.64 ACVTMO_RS22540 ammonium transporter 0.73 ACVTMO_RS02700 potA polyamine ABC transporter ATP-binding protein low > 75
Pseudomonas sp. S08-1 0.64 OH686_13765 Ammonium transporter 0.73 OH686_11455 Putrescine transport ATP-binding protein PotG low > 80
Pseudomonas stutzeri RCH2 0.63 Psest_3771 probable ammonium transporter, marine subtype 0.71 Psest_4282 spermidine/putrescine ABC transporter ATP-binding subunit 0.24 36
Marinobacter adhaerens HP15 0.58 HP15_274 ammonium/methylammonium permease 0.64 HP15_939 spermidine/putrescine ABC transporter ATPase subunit low > 73
Phaeobacter inhibens DSM 17395 0.49 PGA1_c29410 ammonium transporter 0.46 PGA1_c34430 putrescine transport ATP-binding protein PotG low > 62
Dinoroseobacter shibae DFL-12 0.47 Dshi_0144 ammonium transporter (RefSeq) 0.34 Dshi_1055 ABC transporter related (RefSeq) low > 64
Echinicola vietnamensis KMM 6221, DSM 17526 0.36 Echvi_1454 ammonium transporter 0.21 Echvi_1022 ABC-type spermidine/putrescine transport systems, ATPase components low > 79
Rhodospirillum rubrum S1H 0.28 Rru_A0554 Rh-like protein/ammonium transporter (NCBI) 0.56 Rru_A1017 Spermidine/putrescine ABC transporter ATP-binding subunit (NCBI) low > 58
Desulfovibrio vulgaris Miyazaki F 0.26 DvMF_3023 ammonium transporter (RefSeq) 0.34 DvMF_1960 potA putrescine/spermidine ABC transporter ATPase protein (RefSeq) low > 51
Variovorax sp. OAS795 0.24 ABID97_RS20920 ammonium transporter 0.34 ABID97_RS04055 ABC transporter ATP-binding protein low > 91
Acidovorax sp. GW101-3H11 0.24 Ac3H11_1462 Ammonium transporter 0.33 Ac3H11_4180 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) low > 79
Paraburkholderia sabiae LMG 24235 0.22 QEN71_RS23255 ammonium transporter 0.59 QEN71_RS12950 polyamine ABC transporter ATP-binding protein low > 153
Magnetospirillum magneticum AMB-1 0.22 AMB_RS09935 ammonium transporter 0.52 AMB_RS13205 polyamine ABC transporter ATP-binding protein low > 64
Paraburkholderia graminis OAS925 0.22 ABIE53_001796 Amt family ammonium transporter 0.56 ABIE53_002369 putrescine transport system ATP-binding protein low > 113
Burkholderia phytofirmans PsJN 0.21 BPHYT_RS07910 ammonium transporter 0.58 BPHYT_RS23145 putrescine/spermidine ABC transporter ATP-binding protein — —
Paraburkholderia bryophila 376MFSha3.1 0.21 H281DRAFT_05071 ammonium transporter 0.57 H281DRAFT_05181 putrescine transport system ATP-binding protein low > 103
Serratia liquefaciens MT49 0.21 IAI46_05085 ammonium transporter AmtB 0.58 IAI46_08375 putrescine ABC transporter ATP-binding subunit PotG low > 87
Enterobacter sp. TBS_079 0.20 MPMX20_01043 Ammonia channel 0.59 MPMX20_01496 Spermidine/putrescine import ATP-binding protein PotA low > 85
Enterobacter asburiae PDN3 0.20 EX28DRAFT_2518 ammonium transporter 0.59 EX28DRAFT_2098 spermidine/putrescine ABC transporter ATP-binding subunit low > 76
Pseudomonas lactucae CFBP13502 0.20 GEMAOFIL_01859 Ammonia channel 0.72 GEMAOFIL_05563 Spermidine/putrescine import ATP-binding protein PotA low > 96
Pseudomonas simiae WCS417 0.20 PS417_08635 ammonium transporter 0.72 PS417_27115 putrescine ABC transporter, ATPase component (from data) low > 88
Herbaspirillum seropedicae SmR1 0.20 HSERO_RS02900 ammonium transporter 0.34 HSERO_RS05415 spermidine/putrescine ABC transporter ATPase low > 78
Pseudomonas orientalis W4I3 0.20 QF045_RS11350 ammonium transporter 0.72 QF045_RS01490 polyamine ABC transporter ATP-binding protein low > 93
Cupriavidus basilensis FW507-4G11 0.20 RR42_RS28950 ammonium transporter 0.30 RR42_RS37305 sulfate ABC transporter ATP-binding protein low > 128
Pectobacterium carotovorum WPP14 0.20 HER17_RS15785 ammonium transporter AmtB 0.59 HER17_RS12495 putrescine ABC transporter ATP-binding subunit PotG low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.20 GFF4368 Ammonium transporter 0.60 GFF759 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) low > 78
Rahnella sp. WP5 0.20 EX31_RS22320 ammonium transporter AmtB 0.58 EX31_RS09625 putrescine ABC transporter ATP-binding subunit PotG low > 89
Pseudomonas fluorescens SBW25-INTG 0.20 PFLU_RS08590 ammonium transporter 0.72 PFLU_RS28765 polyamine ABC transporter ATP-binding protein low > 109
Pseudomonas fluorescens SBW25 0.20 PFLU_RS08590 ammonium transporter 0.72 PFLU_RS28765 polyamine ABC transporter ATP-binding protein low > 109
Klebsiella pneumoniae MKP103 0.20 KDGMDA_14685 ammonium transporter AmtB 0.59 KDGMDA_17710 putrescine ABC transporter ATP-binding subunit PotG low > 95
Pseudomonas fluorescens FW300-N2E3 0.20 AO353_19220 ammonium transporter 0.72 AO353_29310 transporter low > 101
Klebsiella michiganensis M5al 0.19 BWI76_RS06605 ammonium transporter 0.59 BWI76_RS09465 polyamine ABC transporter ATP-binding protein low > 92
Pseudomonas fluorescens GW456-L13 0.19 PfGW456L13_2267 Ammonium transporter 0.72 PfGW456L13_930 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) low > 87
Escherichia fergusonii Becca 0.19 EFB2_03606 Ammonia channel 0.58 EFB2_03206 Spermidine/putrescine import ATP-binding protein PotA low > 86
Desulfovibrio vulgaris Hildenborough JW710 0.19 DVU1231 amt ammonium transporter (TIGR) 0.35 DVU0098 potA polyamine ABC transporter, ATP-binding protein (TIGR) low > 55
Escherichia coli Nissle 1917 0.19 ECOLIN_RS02700 ammonium transporter AmtB 0.58 ECOLIN_RS04555 putrescine ABC transporter ATP-binding subunit PotG — —
Escherichia coli BL21 0.19 ECD_00403 ammonium transporter 0.58 ECD_00860 putrescine ABC transporter ATPase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_03222 Ammonia channel 0.58 OHPLBJKB_02813 Spermidine/putrescine import ATP-binding protein PotA low > 74
Escherichia coli ECRC102 0.19 NIAGMN_06315 amtB ammonium transporter AmtB 0.58 NIAGMN_04000 potG putrescine ABC transporter ATP-binding subunit PotG low > 80
Escherichia coli ECRC98 0.19 JDDGAC_11915 amtB ammonium transporter AmtB 0.58 JDDGAC_09590 potG putrescine ABC transporter ATP-binding subunit PotG low > 87
Escherichia coli ECOR27 0.19 NOLOHH_01195 amtB ammonium transporter AmtB 0.58 NOLOHH_22325 potG putrescine ABC transporter ATP-binding subunit PotG low > 76
Escherichia coli ECOR38 0.19 HEPCGN_06875 amtB ammonium transporter AmtB 0.59 HEPCGN_02075 potG putrescine ABC transporter ATP-binding subunit PotG low > 88
Escherichia coli ECRC99 0.19 KEDOAH_19705 amtB ammonium transporter AmtB 0.58 KEDOAH_21955 potG putrescine ABC transporter ATP-binding subunit PotG — —
Escherichia coli ECRC100 0.19 OKFHMN_08260 amtB ammonium transporter AmtB 0.58 OKFHMN_05955 potG putrescine ABC transporter ATP-binding subunit PotG low > 79
Escherichia coli BW25113 0.19 b0451 amtB ammonium transporter (NCBI) 0.58 b0855 potG ATP-binding component of putrescine transport system (VIMSS) low > 76
Escherichia coli ECRC101 0.19 MCAODC_27485 amtB ammonium transporter AmtB 0.58 MCAODC_25170 potG putrescine ABC transporter ATP-binding subunit PotG low > 87
Escherichia coli ECRC62 0.19 BNILDI_22610 amtB ammonium transporter AmtB 0.58 BNILDI_20580 potG putrescine ABC transporter ATP-binding subunit PotG low > 75
Erwinia amylovora T8 0.19 OLJFJH_17905 ammonium transporter AmtB 0.56 OLJFJH_16305 putrescine ABC transporter ATP-binding subunit PotG low > 58
Ralstonia sp. UNC404CL21Col 0.19 ABZR87_RS06040 ammonium transporter 0.32 ABZR87_RS12690 ABC transporter ATP-binding protein low > 80
Pseudomonas fluorescens FW300-N2E2 0.19 Pf6N2E2_2430 Ammonium transporter 0.72 Pf6N2E2_4515 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) low > 103
Pantoea sp. MT58 0.19 IAI47_14580 ammonium transporter AmtB 0.59 IAI47_13040 putrescine ABC transporter ATP-binding subunit PotG low > 76
Pantoea agglomerans CFBP13505 P0401 0.19 PagCFBP13505_RS10615 ammonium transporter AmtB 0.58 PagCFBP13505_RS04290 putrescine ABC transporter ATP-binding subunit PotG low > 74
Azospirillum sp. SherDot2 0.18 MPMX19_01885 Ammonia channel 0.55 MPMX19_04882 Spermidine/putrescine import ATP-binding protein PotA low > 112
Pseudomonas sp. SVBP6 0.18 COO64_RS05245 ammonium transporter 0.73 COO64_RS00880 ABC transporter ATP-binding protein low > 93
Pseudomonas sp. DMC3 0.18 GFF4581 Ammonia channel 0.72 GFF1627 Spermidine/putrescine import ATP-binding protein PotA low > 89
Dickeya dianthicola 67-19 0.18 HGI48_RS05745 ammonium transporter AmtB 0.59 HGI48_RS09485 putrescine ABC transporter ATP-binding subunit PotG low > 71
Dickeya dianthicola ME23 0.18 DZA65_RS06070 ammonium transporter AmtB 0.59 DZA65_RS09795 putrescine ABC transporter ATP-binding subunit PotG low > 75
Pseudomonas sp. RS175 0.18 PFR28_00998 Ammonia channel 0.72 PFR28_04293 Spermidine/putrescine import ATP-binding protein PotA low > 88
Pseudomonas fluorescens FW300-N1B4 0.18 Pf1N1B4_243 Ammonium transporter 0.72 Pf1N1B4_2261 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) low > 87
Pseudomonas fluorescens FW300-N2C3 0.18 AO356_03020 ammonium transporter 0.72 AO356_13165 transporter low > 104
Pseudomonas putida KT2440 0.18 PP_2106 putative Ammonium transporter 0.72 PP_5179 spermidine/putrescine ABC transporter - ATP binding subunit low > 96
Xanthomonas campestris pv. campestris strain 8004 0.18 Xcc-8004.249.1 Ammonium transporter 0.57 Xcc-8004.2210.1 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) low > 74
Pseudomonas sp. BP01 0.18 JOY50_RS22045 ammonium transporter 0.72 JOY50_RS22340 potA polyamine ABC transporter ATP-binding protein low > 84
Pseudomonas aeruginosa PUPa3 0.18 DQ20_RS33815 ammonium transporter 0.71 DQ20_RS37830 potA;go_component=cytoplasmic polyamine ABC transporter ATP-binding protein low > 101
Rhodopseudomonas palustris CGA009 0.18 TX73_001425 ammonium transporter 0.41 TX73_021565 ABC transporter ATP-binding protein low > 86
Pseudomonas aeruginosa PA14 0.18 IKLFDK_15465 ammonium transporter 0.71 IKLFDK_23945 polyamine ABC transporter ATP-binding protein low > 98
Pseudomonas aeruginosa MRSN321 0.18 DY961_RS01760 ammonium transporter 0.71 DY961_RS21455 potA;go_component=cytoplasmic polyamine ABC transporter ATP-binding protein low > 100
Azospirillum brasilense Sp245 0.17 AZOBR_RS00845 ammonia channel protein 0.56 AZOBR_RS08840 ABC transporter ATP-binding protein low > 97
Rhizobium sp. OAE497 0.16 ABIE40_RS18420 ammonium transporter 0.50 ABIE40_RS03270 ABC transporter ATP-binding protein low > 107
Pseudomonas syringae pv. syringae B728a 0.16 Psyr_2277 ammonium transporter 0.69 Psyr_4863 Spermidine/putrescine ABC transporter ATP-binding subunit low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.16 Psyr_2277 ammonium transporter 0.69 Psyr_4863 Spermidine/putrescine ABC transporter ATP-binding subunit low > 86
Dickeya dadantii 3937 0.16 DDA3937_RS05700 ammonium transporter AmtB 0.58 DDA3937_RS09465 putrescine ABC transporter ATP-binding subunit PotG low > 74
Ralstonia solanacearum UW163 0.16 UW163_RS02730 ammonia channel protein 0.32 UW163_RS14545 ABC transporter ATP-binding protein — —
Ralstonia solanacearum IBSBF1503 0.16 RALBFv3_RS10850 ammonia channel protein 0.32 RALBFv3_RS01235 ABC transporter ATP-binding protein — —
Ralstonia solanacearum PSI07 0.16 RPSI07_RS22460 ammonia channel protein 0.32 RPSI07_RS16240 ABC transporter ATP-binding protein low > 81
Ralstonia solanacearum GMI1000 0.16 RS_RS01690 ammonium transporter 0.32 RS_RS08760 ABC transporter ATP-binding protein low > 80
Sinorhizobium meliloti 1021 0.15 SMc03807 ammonium transporter 0.51 SMc00771 putrescine ABC transporter ATP-binding protein low > 103
Castellaniella sp019104865 MT123 0.15 ABCV34_RS04770 ammonium transporter 0.55 ABCV34_RS02365 polyamine ABC transporter ATP-binding protein low > 48
Caulobacter crescentus NA1000 Δfur 0.15 CCNA_01399 ammonium transporter/methylammonium transporter 0.48 CCNA_03235 spermidine/putrescine transport ATP-binding protein potA low > 67
Caulobacter crescentus NA1000 0.15 CCNA_01399 ammonium transporter/methylammonium transporter 0.48 CCNA_03235 spermidine/putrescine transport ATP-binding protein potA low > 66
Hydrogenophaga sp. GW460-11-11-14-LB1 0.15 GFF1892 Ammonium transporter 0.54 GFF2034 Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) low > 90
Bosea sp. OAE506 0.14 ABIE41_RS04755 ammonium transporter 0.46 ABIE41_RS21645 ABC transporter ATP-binding protein low > 77
Agrobacterium fabrum C58 0.13 Atu2758 ammonium transporter 0.48 Atu0610 ABC transporter, nucleotide binding/ATPase protein low > 89
Xanthobacter sp. DMC5 0.13 GFF3985 Ammonia channel 0.49 GFF45 Spermidine/putrescine import ATP-binding protein PotA — —

Not shown: 32 genomes with orthologs for SO0760 only; 1 genomes with orthologs for SO1271 only