Conservation of cofitness between b2518 and b3390 in Escherichia coli BW25113

78 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2518 ndk nucleoside diphosphate kinase (NCBI) 1.0 b3390 aroK shikimate kinase I (NCBI) 0.39 6
Escherichia coli ECOR27 1.00 NOLOHH_13355 ndk nucleoside-diphosphate kinase 1.00 NOLOHH_08900 aroK shikimate kinase AroK — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01191 Nucleoside diphosphate kinase 1.00 OHPLBJKB_00313 Shikimate kinase 1 — —
Escherichia coli ECRC62 1.00 BNILDI_12155 ndk nucleoside-diphosphate kinase 1.00 BNILDI_02620 aroK shikimate kinase AroK — —
Escherichia coli BL21 1.00 ECD_02410 multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase 1.00 ECD_03242 shikimate kinase I — —
Escherichia fergusonii Becca 0.99 EFB2_01372 Nucleoside diphosphate kinase 1.00 EFB2_00438 Shikimate kinase 1 low > 86
Escherichia coli ECOR38 0.99 HEPCGN_20825 ndk nucleoside-diphosphate kinase 1.00 HEPCGN_15930 aroK shikimate kinase AroK — —
Escherichia coli Nissle 1917 0.99 ECOLIN_RS14305 nucleoside-diphosphate kinase 1.00 ECOLIN_RS19365 shikimate kinase AroK — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.97 GFF2415 Nucleoside diphosphate kinase (EC 2.7.4.6) 0.90 GFF629 Shikimate kinase I (EC 2.7.1.71) low > 78
Klebsiella michiganensis M5al 0.96 BWI76_RS21100 nucleoside-diphosphate kinase 0.97 BWI76_RS26090 shikimate kinase — —
Enterobacter asburiae PDN3 0.95 EX28DRAFT_0125 nucleoside diphosphate kinase (EC 2.7.4.6) 0.98 EX28DRAFT_4152 shikimate kinase (EC 2.7.1.71) low > 76
Enterobacter sp. TBS_079 0.95 MPMX20_03396 Nucleoside diphosphate kinase 0.98 MPMX20_04279 Shikimate kinase 1 low > 85
Erwinia tracheiphila SCR3 0.91 LU632_RS17820 ndk nucleoside-diphosphate kinase 0.95 LU632_RS22870 aroK shikimate kinase AroK — —
Pantoea sp. MT58 0.90 IAI47_05035 nucleoside-diphosphate kinase 0.95 IAI47_01890 shikimate kinase AroK — —
Dickeya dadantii 3937 0.81 DDA3937_RS15485 nucleoside-diphosphate kinase 0.88 DDA3937_RS19550 shikimate kinase AroK — —
Dickeya dianthicola 67-19 0.81 HGI48_RS15595 nucleoside-diphosphate kinase 0.88 HGI48_RS19680 shikimate kinase AroK — —
Serratia liquefaciens MT49 0.81 IAI46_19295 nucleoside-diphosphate kinase 0.96 IAI46_23705 shikimate kinase AroK — —
Dickeya dianthicola ME23 0.80 DZA65_RS16670 nucleoside-diphosphate kinase 0.88 DZA65_RS20765 shikimate kinase AroK — —
Pectobacterium carotovorum WPP14 0.80 HER17_RS06080 nucleoside-diphosphate kinase 0.96 HER17_RS01775 shikimate kinase AroK — —
Rahnella sp. WP5 0.79 EX31_RS20530 nucleoside-diphosphate kinase 0.95 EX31_RS04725 shikimate kinase AroK low > 89
Alteromonas macleodii MIT1002 0.74 MIT1002_02793 Nucleoside diphosphate kinase 0.74 MIT1002_00448 Shikimate kinase 1 — —
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_1148 nucleoside diphosphate kinase (EC 2.7.4.6) 0.64 B158DRAFT_0763 shikimate kinase (EC 2.7.1.71) — —
Shewanella sp. ANA-3 0.73 Shewana3_2272 nucleoside diphosphate kinase (RefSeq) 0.78 Shewana3_3894 aroK shikimate kinase I (RefSeq) — —
Shewanella loihica PV-4 0.72 Shew_2310 nucleoside-diphosphate kinase (RefSeq) 0.77 Shew_0213 shikimate kinase I (RefSeq) — —
Shewanella amazonensis SB2B 0.71 Sama_1301 ndk nucleoside diphosphate kinase (RefSeq) 0.78 Sama_3368 aroK shikimate kinase I (RefSeq) — —
Acinetobacter radioresistens SK82 0.71 MPMX26_00425 Nucleoside diphosphate kinase 0.51 MPMX26_02811 Shikimate kinase 1 — —
Shewanella oneidensis MR-1 0.71 SO2274 ndk nucleoside diphosphate kinase (NCBI ptt file) 0.78 SO0286 aroK shikimate kinase (NCBI ptt file) — —
Marinobacter adhaerens HP15 0.70 HP15_1489 nucleoside diphosphate kinase 0.46 HP15_479 shikimate kinase I — —
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_03925 nucleoside-diphosphate kinase 0.82 CSW01_13305 shikimate kinase — —
Pseudomonas sp. S08-1 0.66 OH686_17510 Nucleoside diphosphate kinase 0.52 OH686_10020 Shikimate kinase I — —
Pseudomonas stutzeri RCH2 0.65 Psest_1258 Nucleoside diphosphate kinase 0.52 Psest_3714 Shikimate kinase — —
Xanthomonas campestris pv. campestris strain 8004 0.65 Xcc-8004.2738.1 Nucleoside diphosphate kinase (EC 2.7.4.6) 0.38 Xcc-8004.1616.1 Shikimate kinase I (EC 2.7.1.71) — —
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS00065 nucleoside-diphosphate kinase 0.45 LRK54_RS04305 shikimate kinase — —
Rhodanobacter denitrificans MT42 0.64 LRK55_RS18060 nucleoside-diphosphate kinase 0.45 LRK55_RS04080 shikimate kinase — —
Pseudomonas putida KT2440 0.64 PP_0849 Nucleoside diphosphate kinase 0.49 PP_5079 Shikimate kinase — —
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_07145 ndk nucleoside-diphosphate kinase 0.44 OKGIIK_11180 Shikimate kinase — —
Dyella japonica UNC79MFTsu3.2 0.64 ABZR86_RS05460 nucleoside-diphosphate kinase 0.42 ABZR86_RS10475 shikimate kinase — —
Paraburkholderia graminis OAS925 0.64 ABIE53_002745 nucleoside-diphosphate kinase 0.47 ABIE53_003741 shikimate kinase — —
Pseudomonas fluorescens FW300-N2E2 0.63 Pf6N2E2_3182 Nucleoside diphosphate kinase (EC 2.7.4.6) 0.46 Pf6N2E2_3755 Shikimate kinase I (EC 2.7.1.71) — —
Pseudomonas fluorescens FW300-N2C3 0.63 AO356_06610 nucleoside diphosphate kinase 0.50 AO356_09390 shikimate kinase — —
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS13160 nucleoside diphosphate kinase 0.47 RR42_RS19010 shikimate kinase — —
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_00513 nucleoside diphosphate kinase 0.46 H281DRAFT_05614 shikimate kinase — —
Pseudomonas sp. RS175 0.63 PFR28_00293 Nucleoside diphosphate kinase 0.46 PFR28_05012 Shikimate kinase 1 — —
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS12595 nucleoside diphosphate kinase 0.45 BPHYT_RS17890 shikimate kinase — —
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_858 Nucleoside diphosphate kinase (EC 2.7.4.6) 0.47 Pf1N1B4_1538 Shikimate kinase I (EC 2.7.1.71) — —
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_4866 Nucleoside diphosphate kinase (EC 2.7.4.6) 0.47 PfGW456L13_276 Shikimate kinase I (EC 2.7.1.71) — —
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_15870 nucleoside diphosphate kinase 0.50 AO353_12500 shikimate kinase — —
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_1244 nucleoside diphosphate kinase 0.52 Psyr_0408 shikimate kinase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_1244 nucleoside diphosphate kinase 0.52 Psyr_0408 shikimate kinase — —
Pseudomonas simiae WCS417 0.61 PS417_23165 nucleoside diphosphate kinase 0.50 PS417_01980 shikimate kinase — —
Variovorax sp. OAS795 0.61 ABID97_RS14205 nucleoside-diphosphate kinase 0.32 ABID97_RS23260 shikimate kinase — —
Pseudomonas fluorescens SBW25 0.61 PFLU_RS24820 nucleoside-diphosphate kinase 0.50 PFLU_RS02025 shikimate kinase AroK — —
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS24820 nucleoside-diphosphate kinase 0.50 PFLU_RS02025 shikimate kinase AroK — —
Variovorax sp. SCN45 0.61 GFF991 Nucleoside diphosphate kinase (EC 2.7.4.6) 0.27 GFF5324 Shikimate kinase I (EC 2.7.1.71) — —
Rhodospirillum rubrum S1H 0.60 Rru_A2169 Nucleoside-diphosphate kinase (NCBI) 0.29 Rru_A3740 Shikimate kinase (NCBI) — —
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS05960 nucleoside-diphosphate kinase 0.46 QEN71_RS28040 shikimate kinase — —
Dechlorosoma suillum PS 0.59 Dsui_3146 nucleoside diphosphate kinase 0.42 Dsui_1094 shikimate kinase — —
Castellaniella sp019104865 MT123 0.58 ABCV34_RS02605 nucleoside-diphosphate kinase 0.45 ABCV34_RS12700 shikimate kinase — —
Ralstonia solanacearum PSI07 0.57 RPSI07_RS18120 nucleoside-diphosphate kinase 0.43 RPSI07_RS10295 shikimate kinase — —
Phaeobacter inhibens DSM 17395 0.57 PGA1_c19750 nucleoside diphosphate kinase Ndk 0.32 PGA1_c14090 shikimate kinase AroK — —
Ralstonia sp. UNC404CL21Col 0.57 ABZR87_RS10895 nucleoside-diphosphate kinase 0.44 ABZR87_RS02595 shikimate kinase — —
Ralstonia solanacearum IBSBF1503 0.56 RALBFv3_RS15255 nucleoside-diphosphate kinase 0.42 RALBFv3_RS06940 shikimate kinase — —
Ralstonia solanacearum UW163 0.56 UW163_RS12720 nucleoside-diphosphate kinase 0.42 UW163_RS06675 shikimate kinase — —
Ralstonia solanacearum GMI1000 0.56 RS_RS06065 nucleoside-diphosphate kinase 0.41 RS_RS14885 shikimate kinase — —
Magnetospirillum magneticum AMB-1 0.56 AMB_RS18020 nucleoside-diphosphate kinase 0.33 AMB_RS19870 shikimate kinase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF4867 Nucleoside diphosphate kinase (EC 2.7.4.6) 0.38 GFF1332 Shikimate kinase I (EC 2.7.1.71) — —
Acidovorax sp. GW101-3H11 0.56 Ac3H11_1790 Nucleoside diphosphate kinase (EC 2.7.4.6) 0.30 Ac3H11_3449 Shikimate kinase I (EC 2.7.1.71) — —
Dinoroseobacter shibae DFL-12 0.55 Dshi_1350 Nucleoside-diphosphate kinase (RefSeq) 0.28 Dshi_1609 Shikimate kinase (RefSeq) — —
Sinorhizobium meliloti 1021 0.54 SMc00595 nucleoside diphosphate kinase 0.29 SMc00695 shikimate kinase — —
Agrobacterium fabrum C58 0.54 Atu1122 nucleoside diphosphate kinase 0.32 Atu3626 shikimate kinase — —
Rhodopseudomonas palustris CGA009 0.52 TX73_015810 nucleoside-diphosphate kinase 0.33 TX73_002615 shikimate kinase — —
Rhizobium sp. OAE497 0.52 ABIE40_RS06465 nucleoside-diphosphate kinase 0.31 ABIE40_RS17675 shikimate kinase — —
Bosea sp. OAE506 0.51 ABIE41_RS17075 nucleoside-diphosphate kinase 0.32 ABIE41_RS06090 shikimate kinase — —
Synechococcus elongatus PCC 7942 0.49 Synpcc7942_2497 ndk nucleoside diphosphate kinase 0.28 Synpcc7942_0894 aroK shikimate kinase — —
Caulobacter crescentus NA1000 0.48 CCNA_01770 nucleoside diphosphate kinase 0.30 CCNA_03103 shikimate kinase (EC 2.7.1.71) (from data) — —
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_01770 nucleoside diphosphate kinase 0.30 CCNA_03103 shikimate kinase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.45 Echvi_0995 Nucleoside diphosphate kinase 0.24 Echvi_0140 Shikimate kinase — —
Mycobacterium tuberculosis H37Rv 0.42 Rv2445c Probable nucleoside diphosphate kinase NdkA (NDK) (NDP kinase) (nucleoside-2-P kinase) 0.27 Rv2539c Shikimate kinase AroK (SK) — —
Bacteroides ovatus ATCC 8483 0.36 BACOVA_01151 nucleoside diphosphate kinase 0.23 BACOVA_01915 shikimate kinase low > 94

Not shown: 21 genomes with orthologs for b2518 only; 2 genomes with orthologs for b3390 only