Conservation of cofitness between b2040 and b0436 in Escherichia coli BW25113

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2040 rfbD dTDP-4-dehydrorhamnose reductase subunit, NAD(P)-binding, of dTDP-L-rhamnose synthase (NCBI) 1.0 b0436 tig trigger factor (NCBI) 0.28 13
Escherichia fergusonii Becca 0.96 EFB2_01814 dTDP-4-dehydrorhamnose reductase 0.99 EFB2_03621 Trigger factor — —
Escherichia coli BL21 0.95 ECD_01946 dTDP-L-rhamnose synthase, NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit 1.00 ECD_00387 peptidyl-prolyl cis/trans isomerase (trigger factor) low > 60
Escherichia coli ECOR38 0.95 HEPCGN_03110 rfbD dTDP-4-dehydrorhamnose reductase 1.00 HEPCGN_06955 tig trigger factor — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.88 GFF3888 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.97 GFF4352 Cell division trigger factor (EC 5.2.1.8) low > 78
Erwinia tracheiphila SCR3 0.65 LU632_RS08855 rfbD dTDP-4-dehydrorhamnose reductase 0.87 LU632_RS18350 tig trigger factor 0.38 31
Variovorax sp. OAS795 0.65 ABID97_RS05665 dTDP-4-dehydrorhamnose reductase 0.39 ABID97_RS17605 trigger factor — —
Variovorax sp. SCN45 0.63 GFF6881 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.38 GFF490 Cell division trigger factor (EC 5.2.1.8) — —
Acidovorax sp. GW101-3H11 0.63 Ac3H11_1881 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.39 Ac3H11_934 Cell division trigger factor (EC 5.2.1.8) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_01662 dTDP-4-dehydrorhamnose reductase 1.00 OHPLBJKB_03237 Trigger factor low > 73
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_342 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.50 Pf1N1B4_3944 Cell division trigger factor (EC 5.2.1.8) — —
Acinetobacter radioresistens SK82 0.58 MPMX26_00451 dTDP-4-dehydrorhamnose reductase 0.45 MPMX26_00407 Trigger factor low > 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.56 GFF1838 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.39 GFF4040 Cell division trigger factor (EC 5.2.1.8) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_0925 dTDP-4-dehydrorhamnose reductase 0.51 Psyr_1746 Trigger factor — —
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_0925 dTDP-4-dehydrorhamnose reductase 0.51 Psyr_1746 Trigger factor — —
Pseudomonas putida KT2440 0.53 PP_1784 dTDP-4-dehydrorhamnose reductase 0.50 PP_2299 Trigger factor — —
Ralstonia solanacearum PSI07 0.44 RPSI07_RS20610 dTDP-4-dehydrorhamnose reductase 0.36 RPSI07_RS16120 trigger factor — —
Ralstonia solanacearum UW163 0.44 UW163_RS00915 dTDP-4-dehydrorhamnose reductase 0.35 UW163_RS14665 trigger factor — —
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS12650 dTDP-4-dehydrorhamnose reductase 0.35 RALBFv3_RS01355 trigger factor — —
Ralstonia solanacearum GMI1000 0.44 RS_RS03435 dTDP-4-dehydrorhamnose reductase 0.36 RS_RS08640 trigger factor — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS30985 dTDP-4-dehydrorhamnose reductase 0.39 BPHYT_RS09445 trigger factor — —
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS08650 dTDP-4-dehydrorhamnose reductase 0.35 ABZR87_RS12800 trigger factor low > 80
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS15835 dTDP-4-dehydrorhamnose reductase 0.37 RR42_RS09015 trigger factor — —
Dechlorosoma suillum PS 0.41 Dsui_1949 dTDP-4-dehydrorhamnose reductase 0.37 Dsui_2195 trigger factor — —
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.4483.1 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.29 Xcc-8004.4049.1 Cell division trigger factor (EC 5.2.1.8) — —
Pseudomonas sp. RS175 0.40 PFR28_04891 dTDP-4-dehydrorhamnose reductase 0.49 PFR28_01227 Trigger factor — —
Lysobacter sp. OAE881 0.39 ABIE51_RS15605 dTDP-4-dehydrorhamnose reductase 0.31 ABIE51_RS14160 trigger factor — —
Paraburkholderia graminis OAS925 0.39 ABIE53_001140 dTDP-4-dehydrorhamnose reductase 0.37 ABIE53_002114 trigger factor low > 113
Pseudomonas fluorescens GW456-L13 0.39 PfGW456L13_2198 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.50 PfGW456L13_2551 Cell division trigger factor (EC 5.2.1.8) — —
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_11870 dTDP-4-dehydrorhamnose reductase 0.50 AO353_20170 trigger factor — —
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_10055 dTDP-4-dehydrorhamnose reductase 0.51 AO356_01755 trigger factor — —
Pseudomonas sp. S08-1 0.39 OH686_14365 dTDP-4-dehydrorhamnose reductase 0.51 OH686_03650 trigger factor — —
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_3881 dTDP-4-dehydrorhamnose reductase (EC 1.1.1.133) 0.51 Pf6N2E2_2219 Cell division trigger factor (EC 5.2.1.8) — —
Pseudomonas stutzeri RCH2 0.38 Psest_4265 dTDP-4-dehydrorhamnose reductase 0.52 Psest_2288 trigger factor low > 67
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS05680 dTDP-4-dehydrorhamnose reductase 0.32 LRK54_RS16720 trigger factor — —
Pseudomonas fluorescens SBW25 0.38 PFLU_RS01410 dTDP-4-dehydrorhamnose reductase 0.50 PFLU_RS19175 trigger factor — —
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS01410 dTDP-4-dehydrorhamnose reductase 0.50 PFLU_RS19175 trigger factor — —
Pseudomonas simiae WCS417 0.38 PS417_01315 dTDP-4-dehydrorhamnose reductase 0.51 PS417_17240 trigger factor — —
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_01160 rfbD dTDP-4-dehydrorhamnose reductase 0.31 OKGIIK_08045 tig trigger factor low > 52
Rhodanobacter denitrificans MT42 0.38 LRK55_RS05435 dTDP-4-dehydrorhamnose reductase 0.32 LRK55_RS16445 trigger factor — —
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS18720 dTDP-4-dehydrorhamnose reductase 0.32 ABZR86_RS07335 trigger factor 0.53 46
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS25740 dTDP-4-dehydrorhamnose reductase 0.40 QEN71_RS21990 trigger factor — —
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS21855 dTDP-4-dehydrorhamnose reductase 0.39 HSERO_RS12920 trigger factor — —
Shewanella loihica PV-4 0.37 Shew_1403 dTDP-4-dehydrorhamnose reductase (RefSeq) 0.65 Shew_2509 tig trigger factor (RefSeq) low > 60
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_04825 dTDP-4-dehydrorhamnose reductase 0.39 H281DRAFT_00895 trigger factor — —
Shewanella sp. ANA-3 0.36 Shewana3_1381 dTDP-4-dehydrorhamnose reductase (RefSeq) 0.63 Shewana3_2662 tig trigger factor (RefSeq) — —
Agrobacterium fabrum C58 0.36 Atu4616 dTDP-4-dehydrorhamnose reductase 0.24 Atu1664 trigger factor — —
Azospirillum sp. SherDot2 0.35 MPMX19_06726 dTDP-4-dehydrorhamnose reductase 0.27 MPMX19_01549 Trigger factor — —
Klebsiella michiganensis M5al 0.35 BWI76_RS19050 NAD(P)-dependent oxidoreductase 0.96 BWI76_RS06520 trigger factor low > 92
Dickeya dianthicola ME23 0.34 DZA65_RS07125 dTDP-4-dehydrorhamnose reductase 0.86 DZA65_RS06005 trigger factor low > 75
Dickeya dadantii 3937 0.34 DDA3937_RS06750 dTDP-4-dehydrorhamnose reductase 0.87 DDA3937_RS05635 trigger factor 0.38 66
Rhodopseudomonas palustris CGA009 0.34 TX73_000615 dTDP-4-dehydrorhamnose reductase 0.23 TX73_015360 trigger factor low > 86
Rhizobium sp. OAE497 0.34 ABIE40_RS08665 dTDP-4-dehydrorhamnose reductase 0.23 ABIE40_RS08600 trigger factor low > 107
Dickeya dianthicola 67-19 0.34 HGI48_RS06770 dTDP-4-dehydrorhamnose reductase 0.86 HGI48_RS05680 trigger factor low > 71
Dinoroseobacter shibae DFL-12 0.33 Dshi_4117 dTDP-4-dehydrorhamnose reductase (RefSeq) 0.24 Dshi_2190 trigger factor (RefSeq) low > 64
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS04150 dTDP-4-dehydrorhamnose reductase 0.07 HMPREF1078_RS17055 trigger factor — —
Sinorhizobium meliloti 1021 0.33 SM_b21327 dTDP-4-dehydrorhamnose reductase 0.25 SMc02050 trigger factor low > 103
Alteromonas macleodii MIT1002 0.33 MIT1002_03558 dTDP-4-dehydrorhamnose reductase 0.60 MIT1002_02761 Trigger factor — —
Phaeobacter inhibens DSM 17395 0.32 PGA1_65p00230 dTDP-4-dehydrorhamnose reductase RfbD 0.23 PGA1_c18160 trigger factor Tig — —
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS07940 dTDP-4-dehydrorhamnose reductase 0.07 HMPREF1058_RS03090 trigger factor — —
Phocaeicola dorei CL03T12C01 0.32 ABI39_RS00390 dTDP-4-dehydrorhamnose reductase 0.07 ABI39_RS02335 trigger factor low > 72
Azospirillum brasilense Sp245 0.32 AZOBR_RS33420 dTDP-4-dehydrorhamnose reductase 0.26 AZOBR_RS07130 trigger factor low > 97
Bosea sp. OAE506 0.32 ABIE41_RS02860 dTDP-4-dehydrorhamnose reductase 0.23 ABIE41_RS18065 trigger factor low > 77
Rhodospirillum rubrum S1H 0.31 Rru_B0049 dTDP-4-dehydrorhamnose reductase (NCBI) 0.25 Rru_A1549 Trigger factor (NCBI) low > 58
Shewanella amazonensis SB2B 0.31 Sama_2239 dTDP-4-dehydrorhamnose reductase (RefSeq) 0.66 Sama_1223 tig trigger factor (RefSeq) — —
Rahnella sp. WP5 0.29 EX31_RS11505 dTDP-4-dehydrorhamnose reductase 0.88 EX31_RS22240 trigger factor — —
Castellaniella sp019104865 MT123 0.29 ABCV34_RS02405 dTDP-4-dehydrorhamnose reductase 0.36 ABCV34_RS05140 trigger factor — —
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_03730 dTDP-4-dehydrorhamnose reductase 0.23 CCNA_02042 trigger factor chaperone 0.70 9
Caulobacter crescentus NA1000 0.27 CCNA_03730 dTDP-4-dehydrorhamnose reductase 0.23 CCNA_02042 trigger factor chaperone low > 66
Magnetospirillum magneticum AMB-1 0.25 AMB_RS07440 dTDP-4-dehydrorhamnose reductase 0.24 AMB_RS14050 trigger factor — —
Shewanella oneidensis MR-1 0.23 SO1653 rfbD dTDP-4-dehydrorhamnose reductase (NCBI ptt file) 0.63 SO1793 tig trigger factor (NCBI ptt file) — —
Fusobacterium nucleatum SB010 0.22 HUW76_01315 dTDP-4-dehydrorhamnose reductase 0.19 HUW76_01050 trigger factor low > 35
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_0140 dTDP-4-dehydrorhamnose reductase (RefSeq) 0.16 DvMF_0109 trigger factor (RefSeq) — —
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU1363 rfbD dTDP-4-dehydrorhamnose reductase (TIGR) 0.17 DVU1334 tig trigger factor (TIGR) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.17 CA264_19930 NAD(P)-dependent oxidoreductase 0.07 CA264_01415 trigger factor — —

Not shown: 8 genomes with orthologs for b2040 only; 18 genomes with orthologs for b0436 only