Conservation of cofitness between Rru_A0153 and Rru_A1726 in Rhodospirillum rubrum S1H

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Rhodospirillum rubrum S1H 1.0 Rru_A0153 Endonuclease III/Nth (NCBI) 1.0 Rru_A1726 Transcription-repair coupling factor (NCBI) 0.45 5
Azospirillum sp. SherDot2 0.68 MPMX19_02500 Endonuclease III 0.59 MPMX19_00876 Transcription-repair-coupling factor low > 112
Rhodopseudomonas palustris CGA009 0.65 TX73_001780 endonuclease III 0.53 TX73_013805 transcription-repair coupling factor low > 86
Lysobacter sp. OAE881 0.61 ABIE51_RS07560 endonuclease III 0.34 ABIE51_RS14320 transcription-repair coupling factor low > 62
Sphingomonas koreensis DSMZ 15582 0.61 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.49 Ga0059261_0960 transcription-repair coupling factor (mfd) low > 68
Bosea sp. OAE506 0.60 ABIE41_RS03410 endonuclease III 0.53 ABIE41_RS15825 transcription-repair coupling factor low > 77
Magnetospirillum magneticum AMB-1 0.60 AMB_RS21105 endonuclease III 0.62 AMB_RS12390 transcription-repair coupling factor low > 64
Agrobacterium fabrum C58 0.59 Atu4457 endonuclease III 0.51 Atu1778 transcription-repair coupling factor low > 89
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF4003 Endonuclease III (EC 4.2.99.18) 0.31 GFF4934 Transcription-repair coupling factor low > 90
Rhodanobacter denitrificans MT42 0.58 LRK55_RS01640 endonuclease III 0.32 LRK55_RS01815 transcription-repair coupling factor low > 63
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS01850 endonuclease III 0.32 LRK54_RS02040 transcription-repair coupling factor low > 59
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS08185 endonuclease III 0.31 ABZR86_RS21210 transcription-repair coupling factor low > 74
Ralstonia solanacearum PSI07 0.58 RPSI07_RS19265 endonuclease III 0.31 RPSI07_RS16040 transcription-repair coupling factor low > 81
Xanthomonas campestris pv. campestris strain 8004 0.57 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) 0.32 Xcc-8004.1775.1 Transcription-repair coupling factor low > 74
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS14195 endonuclease III 0.31 RALBFv3_RS01445 transcription-repair coupling factor low > 76
Ralstonia solanacearum UW163 0.57 UW163_RS11660 endonuclease III 0.31 UW163_RS14755 transcription-repair coupling factor — —
Dechlorosoma suillum PS 0.57 Dsui_2985 endonuclease III 0.31 Dsui_2385 transcription-repair coupling factor Mfd low > 51
Ralstonia solanacearum GMI1000 0.57 RS_RS04975 endonuclease III 0.31 RS_RS08275 transcription-repair coupling factor low > 80
Dinoroseobacter shibae DFL-12 0.56 Dshi_3023 endonuclease III (RefSeq) 0.49 Dshi_1561 transcription-repair coupling factor (RefSeq) low > 64
Rhizobium sp. OAE497 0.56 ABIE40_RS16960 endonuclease III 0.51 ABIE40_RS09310 transcription-repair coupling factor low > 107
Phaeobacter inhibens DSM 17395 0.56 PGA1_c29040 endonuclease III 0.50 PGA1_c14920 transcription-repair-coupling factor Mfd low > 62
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS09915 endonuclease III 0.31 ABZR87_RS13240 transcription-repair coupling factor low > 80
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS24560 endonuclease III 0.31 QEN71_RS22060 transcription-repair coupling factor low > 153
Variovorax sp. SCN45 0.56 GFF418 Endonuclease III (EC 4.2.99.18) 0.31 GFF412 Transcription-repair coupling factor low > 127
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_04675 nth endonuclease III 0.32 OKGIIK_09105 mfd transcription-repair coupling factor low > 52
Burkholderia phytofirmans PsJN 0.55 BPHYT_RS06080 endonuclease IV 0.31 BPHYT_RS09290 helicase low > 109
Variovorax sp. OAS795 0.55 ABID97_RS17315 endonuclease III 0.31 ABID97_RS17285 transcription-repair coupling factor low > 91
Paraburkholderia graminis OAS925 0.54 ABIE53_001423 endonuclease-3 0.31 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) low > 113
Acidovorax sp. GW101-3H11 0.54 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) 0.31 Ac3H11_328 Transcription-repair coupling factor low > 79
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III 0.31 H281DRAFT_00880 transcription-repair coupling factor low > 103
Acinetobacter radioresistens SK82 0.54 MPMX26_02306 Endonuclease III 0.30 MPMX26_01319 Transcription-repair-coupling factor low > 36
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_04085 endonuclease III 0.32 AO353_00435 transcription-repair coupling factor low > 101
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS05970 endonuclease III 0.30 RR42_RS07845 transcription-repair coupling factor low > 128
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) 0.32 Pf1N1B4_3916 Transcription-repair coupling factor low > 87
Castellaniella sp019104865 MT123 0.53 ABCV34_RS08465 endonuclease III 0.29 ABCV34_RS08660 transcription-repair coupling factor low > 48
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) 0.32 Pf6N2E2_2278 Transcription-repair coupling factor 0.19 40
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_18345 endonuclease III 0.32 AO356_02270 transcription-repair coupling factor low > 104
Pseudomonas putida KT2440 0.53 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites 0.33 PP_2148 transcription-repair coupling factor low > 96
Shewanella amazonensis SB2B 0.53 Sama_1836 endonuclease III (RefSeq) 0.34 Sama_1330 transcription-repair coupling factor (RefSeq) low > 62
Pseudomonas sp. S08-1 0.53 OH686_03910 endonuclease III 0.33 OH686_21990 transcription-repair coupling factor low > 80
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) 0.32 PfGW456L13_4027 Transcription-repair coupling factor low > 87
Pseudomonas stutzeri RCH2 0.52 Psest_3118 endonuclease III 0.33 Psest_1653 transcription-repair coupling factor (mfd) low > 67
Pantoea sp. MT58 0.52 IAI47_10475 endonuclease III 0.33 IAI47_11975 transcription-repair coupling factor low > 76
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS05740 endonuclease III 0.32 PFLU_RS07710 transcription-repair coupling factor 0.18 106
Pseudomonas fluorescens SBW25 0.52 PFLU_RS05740 endonuclease III 0.32 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas simiae WCS417 0.52 PS417_05655 endonuclease III 0.32 PS417_07635 transcription-repair coupling factor low > 88
Pseudomonas sp. RS175 0.52 PFR28_03349 Endonuclease III 0.33 PFR28_01123 Transcription-repair-coupling factor low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.52 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.32 Psyr_1896 transcription-repair coupling factor low > 86
Marinobacter adhaerens HP15 0.52 HP15_1285 endonuclease III 0.32 HP15_2257 transcription-repair-coupling factor low > 73
Pseudomonas syringae pv. syringae B728a 0.52 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.32 Psyr_1896 transcription-repair coupling factor low > 86
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_2365 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.32 B158DRAFT_1800 transcription-repair coupling factor low > 40
Erwinia tracheiphila SCR3 0.51 LU632_RS11305 nth endonuclease III 0.32 LU632_RS14730 mfd transcription-repair coupling factor low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS15000 endonuclease III 0.52 A4249_RS04775 transcription-repair coupling factor 0.48 39
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF3641 Endonuclease III (EC 4.2.99.18) 0.33 GFF3397 Transcription-repair coupling factor low > 78
Klebsiella michiganensis M5al 0.51 BWI76_RS16385 endonuclease III 0.33 BWI76_RS11205 transcription-repair coupling factor — —
Enterobacter asburiae PDN3 0.51 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.33 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Enterobacter sp. TBS_079 0.51 MPMX20_02005 Endonuclease III 0.33 MPMX20_01795 Transcription-repair-coupling factor low > 85
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_05145 endonuclease III 0.34 CSW01_09445 transcription-repair coupling factor low > 62
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_03847 endonuclease III 0.53 CCNA_01920 transcription-repair coupling factor Mfd low > 67
Caulobacter crescentus NA1000 0.50 CCNA_03847 endonuclease III 0.53 CCNA_01920 transcription-repair coupling factor Mfd low > 66
Escherichia fergusonii Becca 0.50 EFB2_02359 Endonuclease III 0.33 EFB2_02861 Transcription-repair-coupling factor low > 86
Pectobacterium carotovorum WPP14 0.50 HER17_RS10860 endonuclease III 0.33 HER17_RS08775 transcription-repair coupling factor low > 75
Escherichia coli ECRC62 0.50 BNILDI_16835 nth endonuclease III 0.33 BNILDI_19160 mfd transcription-repair coupling factor low > 75
Escherichia coli BL21 0.50 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 0.33 ECD_01110 transcription-repair coupling factor — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_02093 Endonuclease III 0.33 OHPLBJKB_02552 Transcription-repair-coupling factor 0.57 8
Escherichia coli ECOR38 0.50 HEPCGN_05910 nth endonuclease III 0.33 HEPCGN_24015 mfd transcription-repair coupling factor low > 87
Escherichia coli ECOR27 0.50 NOLOHH_18045 nth endonuclease III 0.33 NOLOHH_20995 mfd transcription-repair coupling factor — —
Escherichia coli BW25113 0.50 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) 0.33 b1114 mfd transcription-repair coupling factor (NCBI) low > 76
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS08070 endonuclease IV 0.30 HSERO_RS15180 transcription-repair coupling factor low > 78
Serratia liquefaciens MT49 0.50 IAI46_11455 endonuclease III 0.33 IAI46_10320 transcription-repair coupling factor low > 86
Escherichia coli ECRC100 0.50 OKFHMN_27525 nth endonuclease III 0.33 OKFHMN_03470 mfd transcription-repair coupling factor low > 80
Escherichia coli ECRC98 0.50 JDDGAC_02115 nth endonuclease III 0.33 JDDGAC_07130 mfd transcription-repair coupling factor low > 86
Escherichia coli ECRC99 0.50 KEDOAH_00580 nth endonuclease III 0.33 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia coli ECRC102 0.50 NIAGMN_00540 nth endonuclease III 0.33 NIAGMN_24360 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 0.50 MCAODC_17885 nth endonuclease III 0.33 MCAODC_22830 mfd transcription-repair coupling factor low > 87
Dickeya dianthicola ME23 0.50 DZA65_RS11025 endonuclease III 0.32 DZA65_RS13530 transcription-repair coupling factor low > 75
Rahnella sp. WP5 0.50 EX31_RS06590 endonuclease III 0.33 EX31_RS24520 transcription-repair coupling factor low > 89
Dickeya dianthicola 67-19 0.49 HGI48_RS10545 endonuclease III 0.32 HGI48_RS13065 transcription-repair coupling factor low > 71
Dickeya dadantii 3937 0.49 DDA3937_RS10545 endonuclease III 0.32 DDA3937_RS13000 transcription-repair coupling factor low > 74
Shewanella loihica PV-4 0.48 Shew_2072 endonuclease III (RefSeq) 0.31 Shew_1630 transcription-repair coupling factor (RefSeq) 0.25 60
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_1263 endonuclease III 0.25 Echvi_1312 transcription-repair coupling factor (mfd) low > 79
Mycobacterium tuberculosis H37Rv 0.29 Rv3674c Probable endonuclease III Nth (DNA-(apurinic or apyrimidinic site)lyase) (AP lyase) (AP endonuclease class I) (endodeoxyribonuclease (apurinic or apyrimidinic)) (deoxyribonuclease (apurinic or apyrimidinic)) 0.26 Rv1020 Probable transcription-repair coupling factor Mfd (TRCF) low > 58
Alteromonas macleodii MIT1002 0.29 MIT1002_01251 Endonuclease III 0.33 MIT1002_01646 Transcription-repair-coupling factor low > 70
Synechococcus elongatus PCC 7942 0.28 Synpcc7942_0447 nth DNA-(apurinic or apyrimidinic site) lyase / endonuclease III 0.25 Synpcc7942_1326 mfd transcription-repair coupling factor low > 38
Bifidobacterium breve UCC2003 0.27 BBR_RS11790 endonuclease III 0.26 BBR_RS14115 transcription-repair coupling factor low > 34

Not shown: 12 genomes with orthologs for Rru_A0153 only; 5 genomes with orthologs for Rru_A1726 only